Wall clock time and date at job start Fri Apr 10 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29022 * 124.91757 * 2 1 4 4 C 1.31784 * 117.12499 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74878 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47369 * 305.02209 * 5 4 3 7 7 O 1.21282 * 119.99858 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00284 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00004 * 0.02562 * 8 6 5 10 10 C 1.46506 * 120.00290 * 180.02562 * 8 6 5 11 11 C 1.53001 * 109.47114 * 270.00378 * 10 8 6 12 12 H 1.09006 * 109.47121 * 59.99738 * 11 10 8 13 13 O 1.42895 * 109.46955 * 299.99823 * 11 10 8 14 14 C 1.52992 * 109.47148 * 179.97438 * 11 10 8 15 15 N 1.46499 * 109.47267 * 184.99978 * 14 11 10 16 16 C 1.36935 * 119.99938 * 179.97438 * 15 14 11 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99892 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99858 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99644 * 20 18 16 22 22 H 1.48494 * 109.46800 * 209.99692 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99394 * 20 18 16 24 24 C 1.33640 * 114.49788 * 0.23062 * 4 3 2 25 25 S 1.70980 * 124.91474 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47098 * 89.99779 * 1 2 3 27 27 H 1.09003 * 109.47154 * 210.00105 * 1 2 3 28 28 H 1.08997 * 109.46818 * 329.99834 * 1 2 3 29 29 H 1.09000 * 109.46861 * 185.02186 * 5 4 3 30 30 H 1.08997 * 109.47105 * 65.02114 * 5 4 3 31 31 H 1.08994 * 109.47389 * 270.00168 * 9 8 6 32 32 H 1.09007 * 109.46958 * 29.99862 * 9 8 6 33 33 H 1.09000 * 109.47278 * 149.99598 * 9 8 6 34 34 H 1.08996 * 109.46975 * 149.99846 * 10 8 6 35 35 H 1.08999 * 109.46944 * 30.00396 * 10 8 6 36 36 H 0.96699 * 114.00430 * 299.99811 * 13 11 10 37 37 H 1.09004 * 109.47330 * 64.99881 * 14 11 10 38 38 H 1.09005 * 109.47124 * 305.00085 * 14 11 10 39 39 H 0.96999 * 119.99984 * 359.97438 * 15 14 11 40 40 H 0.97005 * 119.99715 * 180.02562 * 19 18 16 41 41 H 1.07997 * 126.03119 * 179.77194 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2372 2.9360 -1.1647 7 8 3.3223 2.6811 -1.9189 8 7 4.9906 4.0351 -1.3666 9 6 6.0954 4.3433 -0.4553 10 6 4.7049 4.9216 -2.4975 11 6 5.5028 4.4626 -3.7196 12 1 5.2186 3.4422 -3.9769 13 8 6.8995 4.5071 -3.4207 14 6 5.2039 5.3880 -4.9007 15 7 5.8735 4.8801 -6.1007 16 6 5.7486 5.5486 -7.2892 17 1 5.1529 6.4479 -7.3431 18 6 6.3834 5.0676 -8.4262 19 7 6.2629 5.7098 -9.5686 20 14 7.4075 3.5079 -8.3349 21 1 6.5460 2.3326 -8.6208 22 1 8.5017 3.5750 -9.3365 23 1 7.9889 3.3765 -6.9747 24 6 3.9354 -0.4007 -0.0059 25 16 2.4857 -1.4020 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 5.5448 1.6351 -0.0915 30 1 4.4375 2.5828 0.9303 31 1 5.7301 4.9665 0.3609 32 1 6.5021 3.4164 -0.0507 33 1 6.8762 4.8763 -0.9980 34 1 4.9891 5.9419 -2.2401 35 1 3.6395 4.8877 -2.7255 36 1 7.2230 5.3866 -3.1826 37 1 5.5687 6.3908 -4.6781 38 1 4.1280 5.4225 -5.0721 39 1 6.4052 4.0702 -6.0533 40 1 6.7063 5.3735 -10.3632 41 1 4.9545 -0.7581 -0.0107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486315168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:49 Heat of formation + Delta-G solvation = -51.909189 kcal Electronic energy + Delta-G solvation = -23556.906717 eV Core-core repulsion = 19984.262610 eV Total energy + Delta-G solvation = -3572.644106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44917 -40.34996 -38.82175 -36.45942 -35.83963 -34.11690 -33.53656 -31.73028 -30.35810 -28.86762 -27.93514 -26.66119 -24.51743 -23.61704 -22.83239 -20.84241 -20.33251 -19.84380 -18.61916 -18.12189 -17.66205 -17.00814 -16.65542 -16.59171 -16.41016 -15.90133 -15.71395 -15.45439 -15.10992 -14.63777 -14.47418 -14.37123 -14.09238 -13.87513 -13.72845 -13.53101 -13.29103 -13.17029 -13.08641 -12.96451 -12.86623 -12.62143 -12.32736 -12.29599 -11.97231 -11.88208 -11.28734 -11.06584 -10.83152 -10.54733 -10.31649 -9.64353 -9.51808 -9.36152 -8.07967 -5.41246 -0.23938 0.45319 0.76081 1.34848 1.36541 1.45263 1.64010 1.72631 2.15581 2.44019 3.12607 3.22355 3.36088 3.56950 3.69235 3.86386 3.99790 4.09788 4.13638 4.24130 4.33664 4.39442 4.45119 4.52923 4.53353 4.62776 4.69832 4.75264 4.86722 4.87751 4.98073 5.05018 5.15600 5.23387 5.52773 5.69016 6.16113 6.40929 6.84092 6.86055 7.02554 7.22795 7.78617 7.97132 9.13408 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.002928 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.675180 B = 9560.326555 C =10238.665900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 N -0.489 5.489 4 C 0.060 3.940 5 C -0.057 4.057 6 C 0.505 3.495 7 O -0.576 6.576 8 N -0.607 5.607 9 C 0.071 3.929 10 C 0.097 3.903 11 C 0.104 3.896 12 H 0.067 0.933 13 O -0.559 6.559 14 C 0.126 3.874 15 N -0.755 5.755 16 C -0.237 4.237 17 H 0.060 0.940 18 C -0.061 4.061 19 N -0.981 5.981 20 Si 0.954 3.046 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.255 1.255 24 C -0.262 4.262 25 S 0.142 5.858 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.387 0.613 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.365 0.635 40 H 0.259 0.741 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -12.152 31.264 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.248 4.248 3 N -0.204 5.204 4 C -0.073 4.073 5 C -0.099 4.099 6 C 0.294 3.706 7 O -0.455 6.455 8 N -0.340 5.340 9 C -0.070 4.070 10 C -0.027 4.027 11 C 0.043 3.957 12 H 0.085 0.915 13 O -0.367 6.367 14 C -0.001 4.001 15 N -0.401 5.401 16 C -0.368 4.368 17 H 0.078 0.922 18 C -0.253 4.253 19 N -0.632 5.632 20 Si 0.781 3.219 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.180 1.180 24 C -0.401 4.401 25 S 0.397 5.603 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.199 0.801 40 H 0.068 0.932 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.559 -13.307 30.648 33.722 hybrid contribution 1.008 0.708 -0.856 1.500 sum -3.552 -12.599 29.792 32.541 Atomic orbital electron populations 1.20563 0.83603 1.05216 1.04362 1.27560 1.03194 0.91124 1.02956 1.66021 1.05410 1.32884 1.16130 1.19954 0.90076 0.94415 1.02806 1.20352 0.98834 0.92492 0.98172 1.21033 0.81314 0.81715 0.86547 1.90730 1.32363 1.73393 1.48992 1.47801 1.33143 1.24404 1.28613 1.22151 0.88345 1.03366 0.93132 1.21946 1.00359 0.94791 0.85641 1.22187 0.82057 0.98833 0.92640 0.91451 1.86557 1.22779 1.36368 1.90947 1.21439 0.95824 0.96729 0.86141 1.42625 1.60849 1.30462 1.06149 1.19069 1.24803 1.06200 0.86754 0.92223 1.25476 1.02377 1.02401 0.95040 1.69872 1.49872 1.42968 1.00459 0.85421 0.78657 0.79814 0.78000 1.20967 1.21519 1.17980 1.27143 1.04823 0.95349 1.12739 1.83686 0.97027 1.11769 1.67864 0.89562 0.87530 0.89508 0.84252 0.85042 0.90657 0.89217 0.89613 0.86648 0.90984 0.76395 0.93544 0.95540 0.80145 0.93179 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.46 71.24 0.75 -0.40 16 2 C 0.03 0.64 7.39 88.52 0.65 1.29 16 3 N -0.49 -13.19 9.68 -179.40 -1.74 -14.92 16 4 C 0.06 1.35 5.64 41.52 0.23 1.59 16 5 C -0.06 -0.98 4.75 29.10 0.14 -0.85 16 6 C 0.51 13.24 7.64 87.66 0.67 13.91 16 7 O -0.58 -21.51 15.02 -3.03 -0.05 -21.56 16 8 N -0.61 -12.74 2.80 -846.76 -2.37 -15.11 16 9 C 0.07 0.78 9.98 127.77 1.28 2.05 16 10 C 0.10 2.35 5.10 86.38 0.44 2.79 16 11 C 0.10 3.23 3.27 30.59 0.10 3.33 16 12 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 13 O -0.56 -15.57 12.01 -148.98 -1.79 -17.35 16 14 C 0.13 4.87 5.90 86.38 0.51 5.38 16 15 N -0.76 -37.53 5.35 -343.45 -1.84 -39.37 16 16 C -0.24 -14.15 10.47 84.04 0.88 -13.27 16 17 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 18 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.98 -64.61 13.97 21.65 0.30 -64.31 16 20 Si 0.95 48.04 27.74 68.60 1.90 49.94 16 21 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.26 -11.95 6.52 99.48 0.65 -11.30 16 24 C -0.26 -4.70 11.07 66.78 0.74 -3.96 16 25 S 0.14 2.39 23.18 -56.49 -1.31 1.08 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.14 1.47 7.29 -2.39 -0.02 1.46 16 30 H 0.13 1.61 8.11 -2.39 -0.02 1.59 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.64 6.44 -2.38 -0.02 0.62 16 33 H 0.09 0.85 6.88 -2.39 -0.02 0.84 16 34 H 0.12 2.00 8.07 -2.39 -0.02 1.99 16 35 H 0.07 2.11 7.42 -2.39 -0.02 2.09 16 36 H 0.39 7.60 8.79 -74.06 -0.65 6.95 16 37 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.37 18.01 5.53 -92.71 -0.51 17.50 16 40 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 41 H 0.20 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -87.47 357.59 -0.19 -87.66 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.16 Total: 25.36 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.85 Total: 8.58 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -5.64 Total: -133.70 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.83 Total: -38.91 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.90 Total: 49.94 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.08 kcal Total: -87.47 -0.19 -87.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486315168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.749 kcal (2) G-P(sol) polarization free energy of solvation -87.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds