Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91602 * 2 1 4 4 C 1.31789 * 117.12247 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.74565 * 180.02562 * 4 3 2 6 6 C 1.33634 * 114.50028 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.03727 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47064 * 90.00060 * 7 6 4 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47153 * 59.99993 * 12 11 10 14 14 O 1.42906 * 109.47321 * 300.00195 * 12 11 10 15 15 C 1.53005 * 109.47452 * 179.97438 * 12 11 10 16 16 N 1.46497 * 109.47276 * 184.99625 * 15 12 11 17 17 C 1.36933 * 120.00088 * 179.97438 * 16 15 12 18 18 H 1.08007 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00343 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99683 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00208 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47197 * 59.99936 * 21 19 17 23 23 H 1.48496 * 109.47432 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47088 * 300.00016 * 21 19 17 25 25 S 1.70977 * 124.91631 * 180.31279 * 2 1 3 26 26 H 1.09005 * 109.46862 * 90.02407 * 1 2 3 27 27 H 1.09001 * 109.47414 * 210.02200 * 1 2 3 28 28 H 1.09003 * 109.47031 * 330.02919 * 1 2 3 29 29 H 1.09004 * 109.47140 * 269.99506 * 5 4 3 30 30 H 1.08996 * 109.47927 * 29.99567 * 5 4 3 31 31 H 1.09007 * 109.46927 * 149.99687 * 5 4 3 32 32 H 1.09002 * 109.47152 * 330.00152 * 7 6 4 33 33 H 1.09001 * 109.46980 * 210.00253 * 7 6 4 34 34 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 36 36 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 37 37 H 0.96698 * 113.99401 * 300.00118 * 14 12 11 38 38 H 1.08990 * 109.46781 * 305.00501 * 15 12 11 39 39 H 1.09001 * 109.46455 * 65.00085 * 15 12 11 40 40 H 0.97004 * 119.99881 * 0.02562 * 16 15 12 41 41 H 0.96997 * 120.00084 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3575 -0.8995 -0.0004 8 6 5.8315 -1.0657 1.4204 9 8 5.0876 -0.8052 2.3422 10 7 7.0817 -1.5048 1.6667 11 6 7.5422 -1.6669 3.0479 12 6 8.9860 -2.1733 3.0480 13 1 9.6235 -1.4535 2.5345 14 8 9.0495 -3.4317 2.3739 15 6 9.4673 -2.3420 4.4905 16 7 10.8849 -2.7116 4.4923 17 6 11.5375 -2.9168 5.6785 18 1 11.0070 -2.8065 6.6128 19 6 12.8809 -3.2666 5.6802 20 7 13.5272 -3.4015 4.5416 21 14 13.7709 -3.5471 7.2984 22 1 13.1117 -4.6514 8.0409 23 1 15.1859 -3.9080 7.0290 24 1 13.7224 -2.3056 8.1117 25 16 2.4857 -1.4020 -0.0077 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 4.7666 2.3013 -1.0276 30 1 4.0908 2.8788 0.5144 31 1 5.4434 1.7218 0.5134 32 1 5.9949 -0.1800 -0.5143 33 1 5.4057 -1.8596 -0.5142 34 1 7.6765 -1.7135 0.9295 35 1 7.4942 -0.7070 3.5620 36 1 6.9045 -2.3864 3.5615 37 1 8.5051 -4.1217 2.7771 38 1 9.3357 -1.4038 5.0294 39 1 8.8869 -3.1255 4.9778 40 1 11.3614 -2.8104 3.6532 41 1 14.4658 -3.6463 4.5428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497022367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -71.947881 kcal Electronic energy + Delta-G solvation = -22766.445127 eV Core-core repulsion = 19192.932078 eV Total energy + Delta-G solvation = -3573.513049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26799 -40.47281 -38.92398 -36.09305 -35.27727 -34.83303 -33.21643 -31.97028 -30.46105 -30.03666 -27.49161 -26.14830 -24.31451 -23.65822 -22.76868 -21.63384 -19.88049 -19.24197 -18.94559 -18.32940 -17.72325 -17.19865 -16.57022 -16.43414 -16.11444 -16.04446 -15.60722 -15.41671 -14.92489 -14.56139 -14.47688 -14.34730 -14.17657 -14.08689 -13.84667 -13.57838 -13.33417 -13.10513 -12.95583 -12.90280 -12.81898 -12.72286 -12.20857 -12.07030 -11.98216 -11.81214 -11.23280 -10.98574 -10.88691 -10.63465 -10.20783 -10.14326 -9.51247 -9.01879 -7.95477 -5.24965 -0.31189 0.38534 0.75351 1.47482 1.50348 1.56604 1.58627 1.71780 2.18876 2.56191 3.15719 3.35574 3.48478 3.59307 3.61730 3.92829 3.99361 4.05832 4.06880 4.21830 4.41521 4.47943 4.51280 4.53606 4.61932 4.64344 4.71139 4.73507 4.80606 4.93147 4.95310 5.08473 5.21099 5.34650 5.35547 5.47395 6.25646 6.51496 6.77134 6.79416 7.20953 7.32859 8.08007 8.31265 9.27358 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.038242 B = 0.002030 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.004899 B =13789.016446 C =13857.553168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.505 5.505 4 C 0.057 3.943 5 C -0.077 4.077 6 C -0.222 4.222 7 C -0.057 4.057 8 C 0.512 3.488 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.103 3.897 12 C 0.110 3.890 13 H 0.103 0.897 14 O -0.561 6.561 15 C 0.121 3.879 16 N -0.739 5.739 17 C -0.251 4.251 18 H 0.075 0.925 19 C -0.075 4.075 20 N -0.967 5.967 21 Si 0.975 3.025 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.278 1.278 25 S 0.137 5.863 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.418 0.582 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.385 0.615 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.377 0.623 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.801 5.624 -14.982 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.239 4.239 3 N -0.221 5.221 4 C -0.074 4.074 5 C -0.136 4.136 6 C -0.343 4.343 7 C -0.099 4.099 8 C 0.299 3.701 9 O -0.457 6.457 10 N -0.362 5.362 11 C -0.022 4.022 12 C 0.050 3.950 13 H 0.120 0.880 14 O -0.368 6.368 15 C -0.006 4.006 16 N -0.382 5.382 17 C -0.382 4.382 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.617 5.617 21 Si 0.804 3.196 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.204 1.204 25 S 0.394 5.606 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.209 0.791 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.414 5.543 -14.533 29.796 hybrid contribution 1.367 0.151 0.908 1.648 sum -24.047 5.694 -13.624 28.219 Atomic orbital electron populations 1.20617 0.82879 1.05080 1.05198 1.27552 1.03170 0.90905 1.02322 1.66175 1.05076 1.32829 1.18007 1.20479 0.90520 0.94974 1.01453 1.20403 0.95493 0.93943 1.03799 1.25188 0.99585 0.95744 1.13795 1.20131 0.89996 1.06180 0.93617 1.20943 0.81300 0.76054 0.91842 1.90727 1.55754 1.51561 1.47700 1.45763 1.14344 1.67041 1.09036 1.21803 0.94560 1.01971 0.83862 1.22077 0.94120 0.86339 0.92486 0.87967 1.86556 1.72704 1.21302 1.56220 1.21415 0.85513 0.98035 0.95639 1.42401 1.06653 1.83739 1.05442 1.19601 0.93013 1.38377 0.87258 0.90683 1.25599 0.97808 1.03182 1.00168 1.69819 1.09795 1.55959 1.26116 0.85195 0.77152 0.78144 0.79146 1.20397 1.22091 1.20380 1.83730 0.97122 1.11830 1.67936 0.87786 0.88402 0.89299 0.88680 0.91282 0.90614 0.83949 0.84953 0.74482 0.90914 0.91184 0.76635 0.95037 0.95282 0.79069 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.46 71.24 0.75 -0.12 16 2 C 0.04 0.73 7.39 88.52 0.65 1.39 16 3 N -0.50 -12.16 10.53 -179.40 -1.89 -14.05 16 4 C 0.06 1.28 6.74 41.52 0.28 1.56 16 5 C -0.08 -1.35 9.82 71.23 0.70 -0.65 16 6 C -0.22 -4.44 5.08 24.64 0.13 -4.31 16 7 C -0.06 -0.84 5.63 29.10 0.16 -0.67 16 8 C 0.51 11.09 7.82 87.66 0.69 11.78 16 9 O -0.58 -18.00 16.03 -3.03 -0.05 -18.05 16 10 N -0.71 -13.65 5.45 -463.06 -2.52 -16.17 16 11 C 0.10 2.43 5.34 86.38 0.46 2.89 16 12 C 0.11 3.08 3.08 30.60 0.09 3.17 16 13 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 14 O -0.56 -15.93 13.03 -148.98 -1.94 -17.87 16 15 C 0.12 4.51 5.90 86.38 0.51 5.02 16 16 N -0.74 -36.84 5.55 -343.45 -1.91 -38.74 16 17 C -0.25 -13.93 9.99 84.04 0.84 -13.09 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 21 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 S 0.14 2.50 23.18 -56.49 -1.31 1.19 16 26 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.25 7.35 -2.38 -0.02 1.23 16 32 H 0.14 1.29 7.43 -2.39 -0.02 1.27 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.42 6.24 8.35 -92.71 -0.77 5.46 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.38 8.91 9.05 -74.06 -0.67 8.24 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.38 20.26 7.67 -92.71 -0.71 19.55 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -77.06 366.00 -2.66 -79.72 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -1.08 Total: 31.67 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.72 Total: 3.14 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -6.04 Total: -127.74 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.99 Total: -35.92 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.31 Total: 1.19 kcal Total: -77.06 -2.66 -79.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497022367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.771 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds