Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 N 1.46898 * 109.47005 * 185.00138 * 4 2 1 6 6 C 1.46897 * 111.00301 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47588 * 179.97438 * 6 5 4 8 8 O 1.21298 * 119.99907 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00269 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00221 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99911 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00187 * 179.97438 * 10 9 7 13 13 N 1.31404 * 119.99884 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99926 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47496 * 89.99974 * 14 12 10 16 16 H 1.48499 * 109.47178 * 209.99673 * 14 12 10 17 17 H 1.48500 * 109.47200 * 329.99662 * 14 12 10 18 18 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 19 19 C 1.34779 * 119.99741 * 275.00368 * 18 2 1 20 20 O 1.21615 * 120.00237 * 359.97438 * 19 18 2 21 21 C 1.47171 * 119.99547 * 179.97438 * 19 18 2 22 22 C 1.38255 * 128.47481 * 179.69466 * 21 19 18 23 23 N 1.31238 * 111.88660 * 179.84744 * 22 21 19 24 24 N 1.27335 * 120.04235 * 0.49423 * 23 22 21 25 25 S 1.56639 * 109.73897 * 359.71591 * 24 23 22 26 26 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 29 29 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 30 30 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 31 31 H 1.00905 * 110.99876 * 56.04568 * 5 4 2 32 32 H 1.09000 * 109.47406 * 300.00691 * 6 5 4 33 33 H 1.09003 * 109.46948 * 59.99767 * 6 5 4 34 34 H 0.96999 * 120.00024 * 0.02562 * 9 7 6 35 35 H 0.97006 * 120.00071 * 180.02562 * 13 12 10 36 36 H 0.96997 * 120.00110 * 94.99637 * 18 2 1 37 37 H 1.07997 * 124.04912 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5317 -1.6043 -2.2806 8 8 6.1068 -1.1394 -1.3191 9 7 6.2356 -2.2001 -3.2635 10 6 7.6014 -2.2810 -3.1765 11 1 8.1134 -1.8670 -2.3203 12 6 8.3270 -2.8957 -4.1896 13 7 9.6361 -2.9728 -4.1063 14 14 7.4415 -3.6110 -5.6706 15 1 7.3224 -2.5725 -6.7255 16 1 8.2120 -4.7658 -6.1978 17 1 6.0862 -4.0635 -5.2661 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3572 20 8 1.8581 1.1619 2.4117 21 6 2.6370 -0.7121 3.5589 22 6 2.8400 -0.1983 4.8263 23 7 3.2846 -1.1104 5.6586 24 7 3.4851 -2.3005 5.2525 25 16 3.1187 -2.4099 3.7335 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6055 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1370 31 1 3.7996 -1.2884 -0.3432 32 1 3.6095 -2.5199 -2.4294 33 1 3.7559 -0.9588 -3.2718 34 1 5.7758 -2.5716 -4.0326 35 1 10.1427 -3.4015 -4.8138 36 1 2.2490 -1.6317 1.1527 37 1 2.6524 0.8297 5.0992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497792635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = 11.491575 kcal Electronic energy + Delta-G solvation = -22828.892538 eV Core-core repulsion = 19155.457351 eV Total energy + Delta-G solvation = -3673.435186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14361 -40.04207 -38.56821 -36.97530 -34.48905 -33.82577 -32.65188 -31.72224 -31.21636 -27.88390 -27.79336 -25.17608 -23.82651 -23.15530 -21.29904 -20.95557 -19.65585 -19.44437 -18.48181 -17.79900 -16.73421 -16.23770 -16.19398 -15.59392 -15.43693 -15.04777 -14.90570 -14.56582 -14.38143 -14.12092 -13.30484 -13.29448 -13.03730 -12.87126 -12.73014 -12.37194 -12.29077 -12.03005 -11.96515 -11.78076 -11.26148 -11.17669 -10.67244 -10.64529 -10.42555 -10.40941 -10.16890 -10.02583 -9.62896 -9.51961 -8.68943 -8.30831 -8.23020 -6.35863 -3.87776 -0.59305 0.47618 1.15318 1.65980 2.57089 2.68722 2.97215 3.02633 3.11128 3.66227 3.69276 3.87547 4.05498 4.30786 4.38211 4.61509 4.69641 4.92031 5.00846 5.16120 5.23973 5.24995 5.35641 5.40617 5.51688 5.68741 5.73236 5.83580 5.89180 6.07807 6.89474 6.94905 7.31294 7.36695 7.52423 7.69046 8.08903 8.53922 8.89690 9.36758 9.76105 10.77139 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.003040 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.964152 B = 9207.545409 C =10448.921270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.105 0.895 4 C 0.049 3.951 5 N -0.667 5.667 6 C 0.047 3.953 7 C 0.447 3.553 8 O -0.565 6.565 9 N -0.589 5.589 10 C -0.307 4.307 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.880 5.880 14 Si 0.881 3.119 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.714 5.714 19 C 0.609 3.391 20 O -0.513 6.513 21 C -0.288 4.288 22 C 0.075 3.925 23 N -0.252 5.252 24 N -0.254 5.254 25 S 0.429 5.571 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.347 0.653 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.371 0.629 35 H 0.274 0.726 36 H 0.397 0.603 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.567 0.150 8.349 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.123 0.877 4 C -0.081 4.081 5 N -0.300 5.300 6 C -0.086 4.086 7 C 0.233 3.767 8 O -0.446 6.446 9 N -0.228 5.228 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.519 5.519 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.366 5.366 19 C 0.392 3.608 20 O -0.389 6.389 21 C -0.430 4.430 22 C -0.092 4.092 23 N -0.116 5.116 24 N -0.236 5.236 25 S 0.564 5.436 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.167 0.833 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -20.436 0.136 9.338 22.469 hybrid contribution -0.962 -0.635 -1.397 1.811 sum -21.398 -0.498 7.941 22.829 Atomic orbital electron populations 1.22170 0.94502 1.02353 1.03151 1.21170 0.93753 0.98682 0.82301 0.87744 1.22339 0.88745 0.99203 0.97815 1.60011 1.07559 1.57543 1.04929 1.21734 0.94991 0.97140 0.94695 1.19681 0.87960 0.84012 0.85072 1.90578 1.70977 1.50172 1.32920 1.42198 1.07883 1.52762 1.19950 1.19431 0.79503 1.36066 1.08540 0.86285 1.25046 0.95441 0.97608 0.98033 1.69620 1.05094 1.43214 1.34014 0.86662 0.79498 0.79805 0.83328 1.19569 1.20171 1.19546 1.45899 1.67266 1.13762 1.09651 1.16381 0.77530 0.85836 0.81089 1.90854 1.49515 1.14333 1.84186 1.28075 1.14161 1.00153 1.00564 1.24479 0.95888 1.01953 0.86845 1.70702 1.14865 0.94906 1.31174 1.78895 1.20103 1.15697 1.08880 1.82672 1.42706 1.06853 1.11397 0.90954 0.92345 0.91672 0.94686 0.88971 0.83281 0.93604 0.89196 0.79679 0.91551 0.76891 0.76737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.14 1.30 2.88 -67.93 -0.20 1.10 16 3 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 4 C 0.05 0.44 5.30 -3.83 -0.02 0.42 16 5 N -0.67 -9.02 6.12 -115.06 -0.70 -9.72 16 6 C 0.05 0.70 6.17 -4.98 -0.03 0.67 16 7 C 0.45 9.64 7.82 -10.99 -0.09 9.55 16 8 O -0.56 -14.65 15.78 5.54 0.09 -14.56 16 9 N -0.59 -13.46 5.09 -10.96 -0.06 -13.52 16 10 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 11 H 0.12 3.79 7.39 -52.48 -0.39 3.41 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.32 13.96 55.50 0.77 -24.55 16 14 Si 0.88 18.80 27.74 -169.99 -4.71 14.09 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 18 N -0.71 -6.42 4.35 -54.96 -0.24 -6.66 16 19 C 0.61 6.66 7.77 -12.63 -0.10 6.56 16 20 O -0.51 -7.12 16.64 5.26 0.09 -7.04 16 21 C -0.29 -2.83 6.82 -35.95 -0.25 -3.07 16 22 C 0.08 0.75 11.55 -17.80 -0.21 0.54 16 23 N -0.25 -2.93 11.54 30.36 0.35 -2.58 16 24 N -0.25 -2.91 12.51 60.35 0.75 -2.15 16 25 S 0.43 3.67 23.05 -107.50 -2.48 1.20 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.35 4.82 7.28 -39.29 -0.29 4.54 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.40 2.82 7.58 -40.82 -0.31 2.51 16 37 H 0.22 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -35.07 339.89 -5.95 -41.02 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -4.16 Total: 11.96 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.78 Total: 7.39 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.88 Total: -59.18 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.18 Total: -21.60 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.09 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.48 Total: 1.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.07 -5.95 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497792635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.516 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds