Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 N 1.46898 * 109.47005 * 185.00138 * 4 2 1 6 6 C 1.46897 * 111.00301 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47588 * 179.97438 * 6 5 4 8 8 O 1.21298 * 119.99907 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00269 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00221 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99911 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00187 * 179.97438 * 10 9 7 13 13 N 1.31404 * 119.99884 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99926 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47496 * 89.99974 * 14 12 10 16 16 H 1.48499 * 109.47178 * 209.99673 * 14 12 10 17 17 H 1.48500 * 109.47200 * 329.99662 * 14 12 10 18 18 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 19 19 C 1.34779 * 119.99741 * 275.00368 * 18 2 1 20 20 O 1.21615 * 120.00237 * 359.97438 * 19 18 2 21 21 C 1.47171 * 119.99547 * 179.97438 * 19 18 2 22 22 C 1.38255 * 128.47481 * 179.69466 * 21 19 18 23 23 N 1.31238 * 111.88660 * 179.84744 * 22 21 19 24 24 N 1.27335 * 120.04235 * 0.49423 * 23 22 21 25 25 S 1.56639 * 109.73897 * 359.71591 * 24 23 22 26 26 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 29 29 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 30 30 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 31 31 H 1.00905 * 110.99876 * 56.04568 * 5 4 2 32 32 H 1.09000 * 109.47406 * 300.00691 * 6 5 4 33 33 H 1.09003 * 109.46948 * 59.99767 * 6 5 4 34 34 H 0.96999 * 120.00024 * 0.02562 * 9 7 6 35 35 H 0.97006 * 120.00071 * 180.02562 * 13 12 10 36 36 H 0.96997 * 120.00110 * 94.99637 * 18 2 1 37 37 H 1.07997 * 124.04912 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5317 -1.6043 -2.2806 8 8 6.1068 -1.1394 -1.3191 9 7 6.2356 -2.2001 -3.2635 10 6 7.6014 -2.2810 -3.1765 11 1 8.1134 -1.8670 -2.3203 12 6 8.3270 -2.8957 -4.1896 13 7 9.6361 -2.9728 -4.1063 14 14 7.4415 -3.6110 -5.6706 15 1 7.3224 -2.5725 -6.7255 16 1 8.2120 -4.7658 -6.1978 17 1 6.0862 -4.0635 -5.2661 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3572 20 8 1.8581 1.1619 2.4117 21 6 2.6370 -0.7121 3.5589 22 6 2.8400 -0.1983 4.8263 23 7 3.2846 -1.1104 5.6586 24 7 3.4851 -2.3005 5.2525 25 16 3.1187 -2.4099 3.7335 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6055 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1370 31 1 3.7996 -1.2884 -0.3432 32 1 3.6095 -2.5199 -2.4294 33 1 3.7559 -0.9588 -3.2718 34 1 5.7758 -2.5716 -4.0326 35 1 10.1427 -3.4015 -4.8138 36 1 2.2490 -1.6317 1.1527 37 1 2.6524 0.8297 5.0992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497792635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -19.338227 kcal Electronic energy + Delta-G solvation = -22830.229418 eV Core-core repulsion = 19155.457351 eV Total energy + Delta-G solvation = -3674.772067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.95283 -40.89289 -40.23620 -37.93053 -36.06514 -35.18617 -33.73414 -33.46130 -31.99522 -29.09402 -28.59457 -26.62303 -24.82456 -24.23540 -22.06992 -21.75003 -21.25761 -20.42655 -20.23248 -18.72570 -17.72478 -17.50888 -17.06382 -16.94536 -16.55132 -16.19607 -15.90619 -15.62975 -15.46728 -15.32784 -14.93913 -14.45374 -14.18028 -14.05440 -13.85433 -13.43802 -13.14241 -13.06077 -13.00468 -12.78772 -12.65373 -12.39323 -11.98031 -11.92018 -11.51945 -11.49476 -11.24963 -11.21177 -10.95218 -10.44840 -10.25711 -10.23203 -9.30628 -8.39947 -6.01188 -1.39111 -0.27738 0.37764 0.84861 1.31452 1.38062 1.46705 1.77984 1.88566 1.98456 2.24916 2.72368 2.92909 3.16939 3.37675 3.56503 3.64049 3.88416 4.15517 4.23413 4.35769 4.48281 4.54341 4.60633 4.72528 4.75538 4.81624 5.06636 5.32204 5.38171 5.53858 5.90598 6.04093 6.20061 6.36759 6.52581 6.61244 6.90048 6.90200 7.41996 7.99290 8.77819 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.003040 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.964152 B = 9207.545409 C =10448.921270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.076 0.924 4 C 0.055 3.945 5 N -0.693 5.693 6 C 0.062 3.938 7 C 0.445 3.555 8 O -0.617 6.617 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.017 4.017 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.278 1.278 17 H -0.226 1.226 18 N -0.705 5.705 19 C 0.608 3.392 20 O -0.549 6.549 21 C -0.302 4.302 22 C 0.075 3.925 23 N -0.276 5.276 24 N -0.289 5.289 25 S 0.498 5.502 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.342 0.658 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.391 0.609 35 H 0.279 0.721 36 H 0.407 0.593 37 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.063 -1.459 5.873 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.094 0.906 4 C -0.074 4.074 5 N -0.327 5.327 6 C -0.070 4.070 7 C 0.234 3.766 8 O -0.502 6.502 9 N -0.232 5.232 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.149 1.149 18 N -0.357 5.357 19 C 0.392 3.608 20 O -0.428 6.428 21 C -0.443 4.443 22 C -0.093 4.093 23 N -0.139 5.139 24 N -0.271 5.271 25 S 0.632 5.368 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -23.975 -1.497 6.863 24.982 hybrid contribution 0.167 -0.089 -0.554 0.585 sum -23.808 -1.586 6.309 24.681 Atomic orbital electron populations 1.22096 0.92518 1.03542 1.03138 1.21194 0.95165 0.97282 0.82305 0.90591 1.22425 0.85852 1.01083 0.98060 1.59980 1.10570 1.57850 1.04263 1.21663 0.88956 1.00116 0.96257 1.21122 0.91063 0.81178 0.83286 1.90560 1.73070 1.51615 1.34905 1.42020 1.06013 1.53790 1.21366 1.18993 0.82086 1.37365 1.07393 0.92929 1.26155 0.96176 0.97343 1.01860 1.69814 1.07626 1.44504 1.35783 0.85340 0.79854 0.78682 0.77462 1.18344 1.20301 1.14861 1.45883 1.66382 1.14221 1.09166 1.16502 0.77136 0.85474 0.81707 1.90834 1.51289 1.15841 1.84802 1.28077 1.14684 1.01289 1.00297 1.24770 0.95278 1.02476 0.86805 1.70744 1.15892 0.95162 1.32093 1.78677 1.21383 1.16062 1.10956 1.82319 1.40350 1.05006 1.09107 0.89433 0.90473 0.93282 0.91502 0.87432 0.83944 0.89602 0.86434 0.77355 0.91205 0.75643 0.75270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.48 71.98 0.68 -1.02 16 2 C 0.14 2.27 2.88 44.99 0.13 2.40 16 3 H 0.08 1.67 7.58 -2.39 -0.02 1.65 16 4 C 0.05 0.75 5.30 86.30 0.46 1.21 16 5 N -0.69 -16.73 6.12 -517.95 -3.17 -19.89 16 6 C 0.06 1.58 6.17 85.56 0.53 2.11 16 7 C 0.45 18.71 7.82 87.66 0.69 19.40 16 8 O -0.62 -32.83 15.78 -3.09 -0.05 -32.88 16 9 N -0.59 -26.30 5.09 -306.98 -1.56 -27.86 16 10 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 11 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 12 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 13 N -0.94 -55.85 13.96 21.66 0.30 -55.55 16 14 Si 0.97 37.25 27.74 68.60 1.90 39.15 16 15 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 16 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.23 -7.02 6.52 99.48 0.65 -6.37 16 18 N -0.70 -11.52 4.35 -446.05 -1.94 -13.46 16 19 C 0.61 13.05 7.77 86.59 0.67 13.73 16 20 O -0.55 -15.46 16.64 -4.08 -0.07 -15.52 16 21 C -0.30 -5.80 6.82 24.62 0.17 -5.63 16 22 C 0.07 1.48 11.55 84.79 0.98 2.46 16 23 N -0.28 -6.45 11.54 -57.86 -0.67 -7.12 16 24 N -0.29 -6.55 12.51 37.02 0.46 -6.09 16 25 S 0.50 7.99 23.05 -56.49 -1.30 6.68 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.34 8.79 7.28 -89.69 -0.65 8.14 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.39 14.05 5.76 -92.71 -0.53 13.52 16 35 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16 36 H 0.41 4.79 7.58 -92.71 -0.70 4.09 16 37 H 0.23 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -83.63 339.89 -1.26 -84.89 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.80 Total: 31.41 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 5.62 Total: 16.24 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.57 Total: -129.97 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.12 Total: -48.41 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 1.90 Total: 39.15 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -1.30 Total: 6.68 kcal Total: -83.63 -1.26 -84.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497792635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.551 kcal (2) G-P(sol) polarization free energy of solvation -83.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds