Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.53310 * 2 1 4 4 C 1.53000 * 109.46886 * 298.61734 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.20824 * 120.00141 * 0.02562 * 5 4 3 7 7 O 1.34226 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.47308 * 110.59810 * 237.16532 * 2 1 3 9 9 C 1.34523 * 106.61966 * 241.32077 * 8 2 1 10 10 O 1.21538 * 123.77459 * 180.02562 * 9 8 2 11 11 N 1.33795 * 112.45785 * 359.97438 * 9 8 2 12 12 C 1.46504 * 124.17668 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46472 * 89.98527 * 12 11 9 14 14 O 1.21290 * 120.00360 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99444 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99936 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99477 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00103 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00241 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47008 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47108 * 119.99760 * 20 18 16 23 23 H 1.48496 * 109.47119 * 240.00212 * 20 18 16 24 24 C 1.34766 * 111.64572 * 0.02562 * 11 9 8 25 25 O 1.21230 * 127.16143 * 180.02562 * 24 11 9 26 26 H 1.09007 * 109.47056 * 60.00556 * 1 2 3 27 27 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47540 * 300.00670 * 1 2 3 29 29 H 1.09001 * 109.46652 * 178.62079 * 3 2 1 30 30 H 1.08992 * 109.47514 * 58.62169 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 33 33 H 0.96704 * 117.00221 * 179.97438 * 7 5 4 34 34 H 0.97000 * 126.69241 * 61.36034 * 8 2 1 35 35 H 1.09004 * 109.46772 * 209.97953 * 12 11 9 36 36 H 1.08998 * 109.47446 * 329.98292 * 12 11 9 37 37 H 0.96998 * 120.00067 * 0.02562 * 15 13 12 38 38 H 0.97003 * 120.00368 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5985 2.1527 -1.2663 5 6 2.1276 3.5638 -1.2666 6 8 2.8096 3.9535 -0.3485 7 8 1.8413 4.3877 -2.2869 8 7 2.0483 -0.7477 -1.1586 9 6 2.7627 -1.7752 -0.6652 10 8 3.3327 -2.5958 -1.3572 11 7 2.7766 -1.7922 0.6726 12 6 3.4769 -2.7977 1.4756 13 6 4.8838 -2.3315 1.7487 14 8 5.2641 -1.2646 1.3149 15 7 5.7193 -3.1001 2.4751 16 6 6.9993 -2.6763 2.7232 17 1 7.3382 -1.7266 2.3361 18 6 7.8605 -3.4685 3.4724 19 7 7.4483 -4.6242 3.9429 20 14 9.6043 -2.8907 3.8110 21 1 9.8187 -1.5655 3.1760 22 1 9.8119 -2.7759 5.2770 23 1 10.5683 -3.8708 3.2498 24 6 2.0669 -0.7702 1.1902 25 8 1.8943 -0.5185 2.3634 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1562 1.4126 0.0247 30 1 1.6931 1.9608 0.8773 31 1 1.9721 1.6247 -2.1437 32 1 0.5090 2.1729 -1.2910 33 1 2.2027 5.2835 -2.2425 34 1 1.9032 -0.5394 -2.0948 35 1 2.9512 -2.9390 2.4200 36 1 3.5062 -3.7416 0.9312 37 1 5.4152 -3.9535 2.8217 38 1 8.0494 -5.1771 4.4663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594003287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -170.445031 kcal Electronic energy + Delta-G solvation = -26487.579811 eV Core-core repulsion = 22331.209639 eV Total energy + Delta-G solvation = -4156.370172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50308 -40.51024 -38.45585 -38.25972 -36.93803 -36.35004 -35.19272 -33.95442 -32.82807 -31.31073 -30.21158 -28.48236 -26.45943 -24.81822 -23.87714 -22.32592 -20.94676 -20.53547 -19.32776 -18.44048 -18.07008 -17.72833 -17.08196 -16.88039 -16.54222 -16.01365 -15.58104 -15.52308 -15.28654 -14.69778 -14.48667 -14.02472 -13.94340 -13.85821 -13.74142 -13.34558 -13.29478 -12.75639 -12.52797 -12.41310 -12.03268 -11.81221 -11.70738 -11.58643 -11.39829 -11.07272 -10.88396 -10.69116 -10.35040 -10.26291 -10.01665 -9.90109 -9.57205 -9.55767 -8.41541 -8.02666 -6.45136 -3.86120 1.74093 1.90757 2.25174 2.70348 3.07347 3.15504 3.22887 3.27272 3.35194 3.77005 3.83076 4.16735 4.25857 4.42242 4.46861 4.65314 4.89704 4.93218 5.07314 5.13360 5.22556 5.29824 5.36610 5.50608 5.56592 5.64701 5.71904 5.85337 5.89154 6.19481 6.20045 6.76233 7.20091 7.51045 7.53018 7.57745 7.98625 8.25295 8.53311 9.12396 9.45193 9.94686 10.72132 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.003536 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.484224 B = 7916.979967 C = 8802.186202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.107 4.107 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.506 6.506 7 O -0.520 6.520 8 N -0.725 5.725 9 C 0.711 3.289 10 O -0.537 6.537 11 N -0.550 5.550 12 C 0.106 3.894 13 C 0.425 3.575 14 O -0.586 6.586 15 N -0.551 5.551 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.931 3.069 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.538 3.462 25 O -0.460 6.460 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.411 0.589 34 H 0.435 0.565 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.394 0.606 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.949 10.162 -10.813 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 C -0.146 4.146 4 C -0.149 4.149 5 C 0.319 3.681 6 O -0.393 6.393 7 O -0.332 6.332 8 N -0.391 5.391 9 C 0.412 3.588 10 O -0.410 6.410 11 N -0.294 5.294 12 C -0.019 4.019 13 C 0.210 3.790 14 O -0.471 6.471 15 N -0.187 5.187 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.324 3.676 25 O -0.329 6.329 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.270 0.730 34 H 0.279 0.721 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.228 0.772 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.278 10.039 -10.376 22.516 hybrid contribution 1.044 0.355 0.039 1.103 sum -16.234 10.394 -10.337 21.873 Atomic orbital electron populations 1.22070 0.90247 1.04114 1.04331 1.21383 0.96849 0.93283 0.85072 1.21636 1.03856 0.91009 0.98075 1.21344 1.03536 0.88847 1.01180 1.23360 0.77365 0.88417 0.78949 1.90800 1.35743 1.76737 1.36012 1.84510 1.72812 1.28444 1.47475 1.45586 1.55815 1.29121 1.08575 1.15739 0.79098 0.82193 0.81747 1.91008 1.47613 1.41575 1.60790 1.45737 1.47607 1.28524 1.07565 1.21457 0.93452 0.90655 0.96379 1.19882 0.86859 0.87227 0.85071 1.90540 1.77098 1.23744 1.55761 1.41760 1.11715 1.19627 1.45621 1.19765 0.86903 1.05492 1.30739 0.87775 1.25287 1.00500 0.95380 0.96579 1.69614 1.37254 1.11174 1.35767 0.85769 0.81381 0.78935 0.78090 1.19186 1.20629 1.20630 1.20473 0.77388 0.80188 0.89595 1.90789 1.57448 1.68173 1.16449 0.90204 0.91009 0.89559 0.88829 0.88168 0.87405 0.86839 0.72967 0.72063 0.87131 0.86920 0.77208 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.66 37.16 0.32 -0.66 16 2 C 0.13 1.32 1.01 -132.09 -0.13 1.19 16 3 C -0.11 -1.12 3.85 -26.73 -0.10 -1.23 16 4 C -0.11 -0.75 5.37 -27.88 -0.15 -0.90 16 5 C 0.48 4.34 8.33 36.01 0.30 4.64 16 6 O -0.51 -6.82 16.74 -18.75 -0.31 -7.14 16 7 O -0.52 -3.37 13.42 -39.25 -0.53 -3.90 16 8 N -0.73 -7.92 5.52 -52.94 -0.29 -8.21 16 9 C 0.71 11.70 8.62 -88.02 -0.76 10.95 16 10 O -0.54 -10.68 17.48 5.33 0.09 -10.59 16 11 N -0.55 -9.52 2.09 -122.02 -0.26 -9.77 16 12 C 0.11 1.96 6.18 -5.19 -0.03 1.93 16 13 C 0.43 10.43 7.85 -10.98 -0.09 10.34 16 14 O -0.59 -16.51 16.01 5.55 0.09 -16.42 16 15 N -0.55 -14.26 5.29 -10.96 -0.06 -14.32 16 16 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 17 H 0.10 3.13 7.16 -52.48 -0.38 2.75 16 18 C 0.02 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 20 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.54 8.48 6.99 -10.55 -0.07 8.41 16 25 O -0.46 -8.36 17.76 5.60 0.10 -8.26 16 26 H 0.08 0.28 6.57 -51.93 -0.34 -0.06 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.11 0.56 7.21 -51.93 -0.37 0.19 16 32 H 0.11 0.41 6.55 -51.93 -0.34 0.07 16 33 H 0.41 1.19 9.10 45.56 0.41 1.61 16 34 H 0.44 3.26 8.25 -40.82 -0.34 2.93 16 35 H 0.11 1.79 8.00 -51.93 -0.42 1.37 16 36 H 0.11 1.88 7.86 -51.93 -0.41 1.47 16 37 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -39.32 339.67 -4.62 -43.94 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.32 Total: 10.40 kcal Atomic # 6 Polarization: 27.54 SS G_CDS: -0.96 Total: 26.59 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.12 Total: -56.09 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.56 Total: -46.31 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -39.32 -4.62 -43.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594003287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.503 kcal (2) G-P(sol) polarization free energy of solvation -39.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds