Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.53310 * 2 1 4 4 C 1.53000 * 109.46886 * 298.61734 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.20824 * 120.00141 * 0.02562 * 5 4 3 7 7 O 1.34226 * 119.99900 * 180.02562 * 5 4 3 8 8 N 1.47308 * 110.59810 * 237.16532 * 2 1 3 9 9 C 1.34523 * 106.61966 * 241.32077 * 8 2 1 10 10 O 1.21538 * 123.77459 * 180.02562 * 9 8 2 11 11 N 1.33795 * 112.45785 * 359.97438 * 9 8 2 12 12 C 1.46504 * 124.17668 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46472 * 89.98527 * 12 11 9 14 14 O 1.21290 * 120.00360 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99444 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99936 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99477 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00103 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00241 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47008 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47108 * 119.99760 * 20 18 16 23 23 H 1.48496 * 109.47119 * 240.00212 * 20 18 16 24 24 C 1.34766 * 111.64572 * 0.02562 * 11 9 8 25 25 O 1.21230 * 127.16143 * 180.02562 * 24 11 9 26 26 H 1.09007 * 109.47056 * 60.00556 * 1 2 3 27 27 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47540 * 300.00670 * 1 2 3 29 29 H 1.09001 * 109.46652 * 178.62079 * 3 2 1 30 30 H 1.08992 * 109.47514 * 58.62169 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 33 33 H 0.96704 * 117.00221 * 179.97438 * 7 5 4 34 34 H 0.97000 * 126.69241 * 61.36034 * 8 2 1 35 35 H 1.09004 * 109.46772 * 209.97953 * 12 11 9 36 36 H 1.08998 * 109.47446 * 329.98292 * 12 11 9 37 37 H 0.96998 * 120.00067 * 0.02562 * 15 13 12 38 38 H 0.97003 * 120.00368 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5985 2.1527 -1.2663 5 6 2.1276 3.5638 -1.2666 6 8 2.8096 3.9535 -0.3485 7 8 1.8413 4.3877 -2.2869 8 7 2.0483 -0.7477 -1.1586 9 6 2.7627 -1.7752 -0.6652 10 8 3.3327 -2.5958 -1.3572 11 7 2.7766 -1.7922 0.6726 12 6 3.4769 -2.7977 1.4756 13 6 4.8838 -2.3315 1.7487 14 8 5.2641 -1.2646 1.3149 15 7 5.7193 -3.1001 2.4751 16 6 6.9993 -2.6763 2.7232 17 1 7.3382 -1.7266 2.3361 18 6 7.8605 -3.4685 3.4724 19 7 7.4483 -4.6242 3.9429 20 14 9.6043 -2.8907 3.8110 21 1 9.8187 -1.5655 3.1760 22 1 9.8119 -2.7759 5.2770 23 1 10.5683 -3.8708 3.2498 24 6 2.0669 -0.7702 1.1902 25 8 1.8943 -0.5185 2.3634 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1562 1.4126 0.0247 30 1 1.6931 1.9608 0.8773 31 1 1.9721 1.6247 -2.1437 32 1 0.5090 2.1729 -1.2910 33 1 2.2027 5.2835 -2.2425 34 1 1.9032 -0.5394 -2.0948 35 1 2.9512 -2.9390 2.4200 36 1 3.5062 -3.7416 0.9312 37 1 5.4152 -3.9535 2.8217 38 1 8.0494 -5.1771 4.4663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594003287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -204.022267 kcal Electronic energy + Delta-G solvation = -26489.035829 eV Core-core repulsion = 22331.209639 eV Total energy + Delta-G solvation = -4157.826190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.70015 -41.23871 -40.16838 -39.76840 -38.02733 -37.11146 -36.59227 -35.96079 -33.85820 -33.37305 -30.94226 -30.02057 -27.26446 -26.70805 -25.05577 -23.43566 -22.15174 -21.42538 -21.03554 -20.04834 -19.19301 -18.94530 -18.48622 -17.83744 -17.40345 -17.18536 -17.06350 -16.73446 -16.65292 -16.40191 -15.79866 -15.71313 -15.45459 -15.28392 -14.75640 -14.48882 -14.09638 -13.97882 -13.60696 -13.38332 -13.34279 -13.15540 -12.91104 -12.72749 -12.52622 -12.50373 -12.17138 -12.15407 -11.95905 -11.64919 -11.61388 -11.46963 -11.22127 -10.62156 -10.32330 -10.12401 -8.54476 -6.04421 0.51463 1.02667 1.23788 1.31275 1.38465 1.52916 1.86237 1.90526 2.05700 2.15723 2.26656 2.76832 3.08874 3.10815 3.43238 3.64674 3.73718 3.92810 4.06440 4.08164 4.20548 4.38330 4.42460 4.50708 4.62819 4.75035 4.78357 4.84798 5.00531 5.24038 5.33773 5.65971 5.77968 5.87056 5.99412 6.29425 6.46385 7.00392 7.00658 7.07030 7.39244 7.93385 8.62679 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.003536 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.484224 B = 7916.979967 C = 8802.186202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 C -0.104 4.104 4 C -0.105 4.105 5 C 0.481 3.519 6 O -0.562 6.562 7 O -0.509 6.509 8 N -0.695 5.695 9 C 0.704 3.296 10 O -0.578 6.578 11 N -0.562 5.562 12 C 0.113 3.887 13 C 0.419 3.581 14 O -0.629 6.629 15 N -0.558 5.558 16 C -0.339 4.339 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.913 5.913 20 Si 0.995 3.005 21 H -0.277 1.277 22 H -0.267 1.267 23 H -0.267 1.267 24 C 0.523 3.477 25 O -0.492 6.492 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.160 0.840 33 H 0.427 0.573 34 H 0.454 0.546 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.400 0.600 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.910 10.611 -12.108 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.050 3.950 3 C -0.143 4.143 4 C -0.141 4.141 5 C 0.325 3.675 6 O -0.453 6.453 7 O -0.323 6.323 8 N -0.361 5.361 9 C 0.405 3.595 10 O -0.454 6.454 11 N -0.306 5.306 12 C -0.012 4.012 13 C 0.205 3.795 14 O -0.517 6.517 15 N -0.194 5.194 16 C -0.468 4.468 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.553 5.553 20 Si 0.818 3.182 21 H -0.201 1.201 22 H -0.192 1.192 23 H -0.192 1.192 24 C 0.311 3.689 25 O -0.362 6.362 26 H 0.143 0.857 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.178 0.822 33 H 0.289 0.711 34 H 0.303 0.697 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.235 0.765 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.304 10.509 -11.718 24.908 hybrid contribution 1.635 0.271 0.431 1.712 sum -17.669 10.781 -11.287 23.576 Atomic orbital electron populations 1.22187 0.85858 1.05273 1.06882 1.21498 0.99575 0.91930 0.82031 1.21533 1.01030 0.91254 1.00457 1.21425 1.06166 0.87060 0.99489 1.23780 0.76084 0.89295 0.78292 1.90797 1.38373 1.77910 1.38212 1.84473 1.72304 1.29429 1.46078 1.45445 1.53949 1.27013 1.09741 1.15967 0.79348 0.82933 0.81296 1.90976 1.49559 1.43465 1.61420 1.45937 1.47604 1.28911 1.08171 1.21350 0.89862 0.91679 0.98315 1.20921 0.88830 0.86308 0.83394 1.90501 1.78597 1.25579 1.57039 1.41799 1.11422 1.20054 1.46142 1.19682 0.88751 1.05442 1.32923 0.90567 1.26074 1.03962 0.95260 0.95527 1.69661 1.38662 1.11529 1.35411 0.84851 0.76708 0.78173 0.78453 1.20132 1.19169 1.19155 1.21473 0.76716 0.79962 0.90714 1.90759 1.58575 1.68770 1.18146 0.85730 0.90654 0.88893 0.93415 0.88561 0.85193 0.82204 0.71149 0.69683 0.84720 0.84971 0.76503 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.66 71.98 0.62 -0.67 16 2 C 0.14 2.69 1.01 2.99 0.00 2.70 16 3 C -0.10 -2.07 3.85 30.59 0.12 -1.95 16 4 C -0.10 -1.05 5.37 29.85 0.16 -0.89 16 5 C 0.48 7.86 8.33 71.24 0.59 8.46 16 6 O -0.56 -15.25 16.74 21.97 0.37 -14.88 16 7 O -0.51 -5.20 13.42 -51.38 -0.69 -5.89 16 8 N -0.69 -13.73 5.52 -439.82 -2.43 -16.16 16 9 C 0.70 22.88 8.62 179.44 1.55 24.43 16 10 O -0.58 -23.09 17.48 -3.84 -0.07 -23.16 16 11 N -0.56 -19.57 2.09 -777.19 -1.63 -21.19 16 12 C 0.11 4.27 6.18 85.63 0.53 4.80 16 13 C 0.42 21.38 7.85 87.66 0.69 22.06 16 14 O -0.63 -37.26 16.01 -3.06 -0.05 -37.31 16 15 N -0.56 -29.92 5.29 -306.98 -1.62 -31.54 16 16 C -0.34 -19.99 9.68 84.04 0.81 -19.17 16 17 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 18 C -0.01 -0.40 5.50 84.93 0.47 0.06 16 19 N -0.91 -49.79 13.05 21.66 0.28 -49.51 16 20 Si 1.00 44.05 29.55 68.60 2.03 46.07 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 C 0.52 16.46 6.99 87.94 0.61 17.07 16 25 O -0.49 -18.16 17.76 -2.88 -0.05 -18.22 16 26 H 0.12 0.05 6.57 -2.38 -0.02 0.03 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 30 H 0.10 2.01 8.10 -2.39 -0.02 1.99 16 31 H 0.13 0.80 7.21 -2.39 -0.02 0.78 16 32 H 0.16 0.18 6.55 -2.39 -0.02 0.16 16 33 H 0.43 1.57 9.10 -74.05 -0.67 0.90 16 34 H 0.45 5.28 8.25 -92.71 -0.77 4.51 16 35 H 0.14 4.36 8.00 -2.39 -0.02 4.35 16 36 H 0.13 4.43 7.86 -2.39 -0.02 4.41 16 37 H 0.40 20.01 7.90 -92.71 -0.73 19.28 16 38 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -91.42 339.67 1.30 -90.12 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -1.01 Total: 24.76 kcal Atomic # 6 Polarization: 50.75 SS G_CDS: 6.16 Total: 56.91 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.40 Total: -118.41 kcal Atomic # 8 Polarization: -98.97 SS G_CDS: -0.49 Total: -99.46 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -91.42 1.30 -90.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594003287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.899 kcal (2) G-P(sol) polarization free energy of solvation -91.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds