Wall clock time and date at job start Fri Apr 10 2020 18:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 110.53597 * 2 1 4 4 C 1.53005 * 109.46876 * 64.29903 * 3 2 1 5 5 C 1.50694 * 109.47214 * 180.02562 * 4 3 2 6 6 O 1.20828 * 120.00090 * 359.97438 * 5 4 3 7 7 O 1.34229 * 120.00222 * 179.97438 * 5 4 3 8 8 N 1.47317 * 110.60022 * 122.99722 * 2 1 3 9 9 C 1.34526 * 106.62014 * 118.52782 * 8 2 1 10 10 O 1.21536 * 123.77228 * 179.97438 * 9 8 2 11 11 N 1.33792 * 112.45611 * 0.02562 * 9 8 2 12 12 C 1.46502 * 124.17511 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.46630 * 270.03519 * 12 11 9 14 14 O 1.21293 * 120.00073 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00016 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00003 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00337 * 180.02562 * 16 15 13 19 19 N 1.31405 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99785 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46882 * 90.00428 * 20 18 16 22 22 H 1.48494 * 109.47195 * 210.00276 * 20 18 16 23 23 H 1.48500 * 109.47205 * 330.00783 * 20 18 16 24 24 C 1.34761 * 111.64640 * 359.97438 * 11 9 8 25 25 O 1.21239 * 127.16039 * 179.97438 * 24 11 9 26 26 H 1.09002 * 109.47153 * 182.12710 * 1 2 3 27 27 H 1.09001 * 109.46832 * 62.12901 * 1 2 3 28 28 H 1.09004 * 109.47261 * 302.12882 * 1 2 3 29 29 H 1.08994 * 109.47272 * 184.29371 * 3 2 1 30 30 H 1.08991 * 109.46912 * 304.30366 * 3 2 1 31 31 H 1.09006 * 109.46774 * 300.00240 * 4 3 2 32 32 H 1.09003 * 109.47317 * 59.99915 * 4 3 2 33 33 H 0.96703 * 116.99618 * 180.02562 * 7 5 4 34 34 H 0.97005 * 126.68568 * 298.50995 * 8 2 1 35 35 H 1.08994 * 109.47029 * 30.03144 * 12 11 9 36 36 H 1.09001 * 109.47328 * 150.03954 * 12 11 9 37 37 H 0.96998 * 119.99906 * 359.97438 * 15 13 12 38 38 H 0.96994 * 120.00568 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.6598 2.1298 1.2999 5 6 2.1878 3.5412 1.2997 6 8 2.8248 3.9479 0.3568 7 8 1.9506 4.3468 2.3469 8 7 2.0483 -0.7510 1.1565 9 6 2.7600 -1.7790 0.6602 10 8 3.3292 -2.6021 1.3499 11 7 2.7720 -1.7935 -0.6776 12 6 3.4691 -2.7989 -1.4835 13 6 4.8767 -2.3353 -1.7572 14 8 5.2596 -1.2697 -1.3224 15 7 5.7097 -3.1043 -2.4861 16 6 6.9903 -2.6829 -2.7348 17 1 7.3316 -1.7344 -2.3469 18 6 7.8490 -3.4754 -3.4867 19 7 9.0767 -3.0717 -3.7246 20 14 7.2586 -5.1155 -4.1581 21 1 6.6656 -4.9145 -5.5047 22 1 8.4068 -6.0519 -4.2577 23 1 6.2339 -5.6839 -3.2459 24 6 2.0637 -0.7691 -1.1922 25 8 1.8900 -0.5148 -2.3649 26 1 -0.3633 -1.0270 0.0381 27 1 -0.3633 0.4804 -0.9085 28 1 -0.3634 0.5466 0.8703 29 1 3.1538 1.4136 -0.0769 30 1 1.6518 1.9762 -0.8489 31 1 0.5726 2.1490 1.3768 32 1 2.0746 1.5864 2.1488 33 1 2.3093 5.2436 2.3009 34 1 1.9046 -0.5443 2.0934 35 1 3.4969 -3.7439 -0.9410 36 1 2.9421 -2.9372 -2.4275 37 1 5.4033 -3.9563 -2.8342 38 1 9.6762 -3.6250 -4.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594003288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:29 Heat of formation + Delta-G solvation = -162.905557 kcal Electronic energy + Delta-G solvation = -26538.183998 eV Core-core repulsion = 22382.140763 eV Total energy + Delta-G solvation = -4156.043236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57294 -40.51020 -38.52811 -38.44396 -36.99080 -36.36049 -35.26946 -34.01327 -32.86717 -31.73423 -30.28011 -28.68370 -26.47548 -24.76647 -23.90236 -22.33676 -20.89979 -20.59089 -19.48233 -18.53195 -18.44286 -17.83481 -17.08713 -16.88724 -16.55675 -16.09537 -15.62960 -15.57432 -15.35037 -14.84796 -14.65741 -14.13291 -14.06478 -13.89726 -13.48580 -13.37291 -13.18356 -12.78800 -12.69407 -12.44923 -12.21988 -12.05506 -11.87652 -11.81066 -11.42220 -11.17938 -10.88809 -10.74879 -10.62265 -10.11372 -10.06432 -9.91047 -9.63115 -9.60815 -8.55693 -8.23874 -6.34063 -3.86212 1.67869 1.90790 2.17344 2.69807 3.00957 3.02685 3.06742 3.14516 3.16436 3.59714 3.76620 4.08337 4.22244 4.39081 4.44592 4.55294 4.63549 4.90509 5.02074 5.09764 5.20332 5.26222 5.31163 5.41486 5.48349 5.54265 5.63484 5.76119 5.83729 5.85770 6.20360 6.70959 7.11999 7.42922 7.51363 7.57922 8.06624 8.18546 8.52213 8.89028 9.35630 9.70551 10.78507 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.003534 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.964315 B = 7921.955489 C = 8588.775726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.107 4.107 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.505 6.505 7 O -0.520 6.520 8 N -0.725 5.725 9 C 0.712 3.288 10 O -0.537 6.537 11 N -0.551 5.551 12 C 0.103 3.897 13 C 0.434 3.566 14 O -0.568 6.568 15 N -0.578 5.578 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.044 3.956 19 N -0.876 5.876 20 Si 0.880 3.120 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 C 0.538 3.462 25 O -0.459 6.459 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.412 0.588 34 H 0.436 0.564 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.373 0.627 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.947 6.636 10.536 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 C -0.146 4.146 4 C -0.149 4.149 5 C 0.319 3.681 6 O -0.392 6.392 7 O -0.332 6.332 8 N -0.390 5.390 9 C 0.412 3.588 10 O -0.409 6.409 11 N -0.296 5.296 12 C -0.022 4.022 13 C 0.219 3.781 14 O -0.451 6.451 15 N -0.217 5.217 16 C -0.435 4.435 17 H 0.138 0.862 18 C -0.160 4.160 19 N -0.516 5.516 20 Si 0.706 3.294 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 C 0.324 3.676 25 O -0.327 6.327 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.271 0.729 34 H 0.280 0.720 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.206 0.794 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.170 6.634 10.112 24.381 hybrid contribution 0.122 -0.631 -0.213 0.677 sum -21.047 6.004 9.899 24.021 Atomic orbital electron populations 1.22075 0.90192 1.04063 1.04441 1.21387 0.96890 0.93297 0.84978 1.21636 1.04218 0.91053 0.97675 1.21330 1.03652 0.89029 1.00900 1.23337 0.76940 0.88469 0.79347 1.90804 1.37052 1.75878 1.35503 1.84508 1.74231 1.29103 1.45398 1.45590 1.55891 1.28891 1.08633 1.15731 0.79105 0.82257 0.81668 1.91011 1.47569 1.41436 1.60910 1.45721 1.47823 1.28427 1.07621 1.21461 0.93328 0.90893 0.96521 1.19785 0.86704 0.87090 0.84569 1.90582 1.76717 1.23310 1.54453 1.42088 1.12799 1.19162 1.47622 1.19429 0.85295 1.07290 1.31454 0.86216 1.25051 0.95300 0.98416 0.97204 1.69615 1.05314 1.38174 1.38462 0.86665 0.79178 0.83654 0.79926 1.19432 1.20029 1.19281 1.20503 0.77324 0.80141 0.89670 1.90796 1.57298 1.68120 1.16522 0.91007 0.89535 0.90183 0.88788 0.88117 0.86887 0.87371 0.72931 0.71971 0.86795 0.86998 0.79442 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.76 37.16 0.33 -0.59 16 2 C 0.13 1.27 1.00 -132.09 -0.13 1.14 16 3 C -0.11 -1.10 3.84 -26.72 -0.10 -1.20 16 4 C -0.11 -0.74 5.40 -27.88 -0.15 -0.89 16 5 C 0.48 4.34 8.33 36.00 0.30 4.64 16 6 O -0.51 -6.82 16.74 -18.75 -0.31 -7.14 16 7 O -0.52 -3.39 13.42 -39.26 -0.53 -3.92 16 8 N -0.72 -7.56 5.47 -52.93 -0.29 -7.85 16 9 C 0.71 11.25 8.62 -88.02 -0.76 10.49 16 10 O -0.54 -10.30 17.48 5.33 0.09 -10.21 16 11 N -0.55 -9.11 2.09 -122.02 -0.26 -9.37 16 12 C 0.10 1.79 6.18 -5.19 -0.03 1.76 16 13 C 0.43 10.22 7.85 -10.98 -0.09 10.14 16 14 O -0.57 -15.78 16.01 5.55 0.09 -15.69 16 15 N -0.58 -14.05 5.09 -10.96 -0.06 -14.11 16 16 C -0.31 -8.81 10.16 -14.93 -0.15 -8.97 16 17 H 0.12 3.95 7.39 -52.48 -0.39 3.57 16 18 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 20 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 24 C 0.54 8.13 6.98 -10.56 -0.07 8.06 16 25 O -0.46 -8.02 17.76 5.59 0.10 -7.92 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.26 6.55 -51.93 -0.34 -0.08 16 29 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.11 0.39 6.59 -51.93 -0.34 0.04 16 32 H 0.11 0.57 7.12 -51.93 -0.37 0.20 16 33 H 0.41 1.22 9.10 45.56 0.41 1.63 16 34 H 0.44 3.09 8.19 -40.82 -0.33 2.75 16 35 H 0.11 1.73 7.86 -51.93 -0.41 1.32 16 36 H 0.11 1.63 8.00 -51.93 -0.42 1.21 16 37 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 336.47 15.07 5.07 5.07 Total: -1.00 -40.60 336.47 -4.26 -44.86 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.27 Total: 10.91 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: -0.96 Total: 25.70 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.17 Total: -56.35 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.56 Total: -44.88 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -40.60 -4.26 -44.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594003288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.044 kcal (2) G-P(sol) polarization free energy of solvation -40.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds