Wall clock time and date at job start Fri Apr 10 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86787 * 120.00191 * 2 1 4 4 H 1.48497 * 109.47369 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00147 * 3 2 1 6 6 H 1.48505 * 109.47123 * 150.00257 * 3 2 1 7 7 C 1.38949 * 119.99478 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00528 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99685 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99978 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99807 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99924 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46980 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99847 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99947 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00158 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47327 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.47001 * 54.99979 * 18 17 16 20 20 C 1.53005 * 109.46994 * 174.99735 * 18 17 16 21 21 C 1.50692 * 109.47251 * 294.62190 * 20 18 17 22 22 O 1.20824 * 120.00148 * 353.57862 * 21 20 18 23 23 O 1.34232 * 119.99937 * 173.58698 * 21 20 18 24 24 C 1.52995 * 109.47041 * 294.99955 * 18 17 16 25 25 C 1.52992 * 117.52029 * 105.16272 * 24 18 17 26 26 C 1.53002 * 117.49785 * 173.79480 * 24 18 17 27 27 H 0.96996 * 119.99993 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99986 * 359.97438 * 9 7 2 29 29 H 1.08992 * 109.47490 * 59.99523 * 12 10 9 30 30 H 1.09006 * 109.46937 * 299.99139 * 12 10 9 31 31 H 0.97001 * 120.00366 * 0.02562 * 13 12 10 32 32 H 0.97001 * 120.00403 * 0.02562 * 16 14 13 33 33 H 1.08994 * 109.46953 * 59.99944 * 17 16 14 34 34 H 1.09000 * 109.47052 * 300.00156 * 17 16 14 35 35 H 1.09008 * 109.46846 * 54.61773 * 20 18 17 36 36 H 1.08994 * 109.47131 * 174.61467 * 20 18 17 37 37 H 0.96705 * 116.99929 * 179.97438 * 23 21 20 38 38 H 1.09004 * 115.55010 * 319.46232 * 24 18 17 39 39 H 1.09003 * 117.50500 * 214.97003 * 25 24 18 40 40 H 1.08999 * 117.50009 * 359.97438 * 25 24 18 41 41 H 1.09000 * 117.49937 * 359.97385 * 26 24 18 42 42 H 1.09008 * 117.49700 * 144.99926 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6525 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3708 0.0001 13 7 6.0488 -3.7520 -0.0007 14 6 7.3739 -3.9983 -0.0005 15 8 8.1641 -3.0742 0.0010 16 7 7.8231 -5.2690 -0.0007 17 6 9.2634 -5.5368 0.0002 18 6 9.5012 -7.0482 -0.0010 19 1 8.9760 -7.4980 -0.8437 20 6 11.0001 -7.3286 -0.1259 21 6 11.4894 -6.8552 -1.4702 22 8 10.7011 -6.4530 -2.2927 23 8 12.8012 -6.8805 -1.7540 24 6 8.9772 -7.6479 1.3054 25 6 7.6645 -8.4316 1.2470 26 6 8.9897 -9.1721 1.4381 27 1 -0.4850 0.8400 -0.0004 28 1 3.8648 -0.3634 0.0004 29 1 5.9233 -1.8581 0.8909 30 1 5.9246 -1.8558 -0.8890 31 1 5.4185 -4.4893 -0.0023 32 1 7.1928 -6.0063 -0.0015 33 1 9.7139 -5.0985 0.8906 34 1 9.7152 -5.0977 -0.8893 35 1 11.5356 -6.7996 0.6626 36 1 11.1786 -8.3996 -0.0308 37 1 13.0671 -6.5671 -2.6294 38 1 9.1746 -7.0629 2.2037 39 1 6.9982 -8.3622 2.1069 40 1 7.1736 -8.5198 0.2779 41 1 9.3708 -9.7476 0.5945 42 1 9.1953 -9.5898 2.4237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:43 Heat of formation + Delta-G solvation = -137.310816 kcal Electronic energy + Delta-G solvation = -25446.146467 eV Core-core repulsion = 21427.046197 eV Total energy + Delta-G solvation = -4019.100270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87090 -39.85307 -38.65041 -38.14671 -36.51426 -34.89026 -34.38881 -33.67446 -32.68066 -31.76765 -28.50062 -26.95241 -24.49613 -23.62200 -22.80728 -21.88128 -20.71160 -20.19208 -19.61014 -18.76485 -18.42337 -18.00122 -17.02355 -16.88657 -16.01192 -15.72817 -15.61576 -15.38319 -14.94434 -14.90375 -14.27660 -14.13089 -14.03484 -13.62931 -13.42754 -13.11496 -12.90972 -12.66640 -12.44581 -12.13357 -12.05717 -11.96291 -11.89504 -11.64927 -11.39102 -11.21061 -10.92497 -10.61961 -10.56088 -10.43417 -10.06347 -10.02674 -9.67283 -9.12475 -8.73546 -8.59687 -8.27855 -6.38623 -3.91009 1.83219 2.58601 2.82452 3.01956 3.06728 3.14522 3.37266 3.42072 3.61394 4.05769 4.13448 4.19096 4.36870 4.48328 4.60536 4.67655 4.70077 4.82395 4.99478 5.08920 5.16623 5.19408 5.22787 5.30715 5.55590 5.62823 5.71771 5.75855 5.78026 5.84401 5.90291 5.91115 6.16088 6.53328 6.70588 7.10794 7.47697 7.50780 8.02936 8.24647 8.47193 8.80697 8.84233 9.32469 9.66555 10.73636 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022413 B = 0.002382 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.977003 B =11751.199967 C =12611.950340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.440 3.560 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.726 5.726 14 C 0.706 3.294 15 O -0.600 6.600 16 N -0.742 5.742 17 C 0.144 3.856 18 C -0.061 4.061 19 H 0.091 0.909 20 C -0.103 4.103 21 C 0.473 3.527 22 O -0.506 6.506 23 O -0.520 6.520 24 C -0.152 4.152 25 C -0.176 4.176 26 C -0.179 4.179 27 H 0.275 0.725 28 H 0.375 0.625 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.399 -16.143 1.336 29.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.405 3.595 15 O -0.479 6.479 16 N -0.398 5.398 17 C 0.019 3.981 18 C -0.080 4.080 19 H 0.110 0.890 20 C -0.141 4.141 21 C 0.315 3.685 22 O -0.393 6.393 23 O -0.332 6.332 24 C -0.170 4.170 25 C -0.213 4.213 26 C -0.216 4.216 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 24.140 -15.868 1.498 28.927 hybrid contribution 0.106 0.937 -0.571 1.102 sum 24.247 -14.931 0.927 28.490 Atomic orbital electron populations 1.69618 1.05707 1.27777 1.48346 1.25063 0.95539 0.98174 0.97183 0.86666 0.79923 0.83743 0.79142 1.19405 1.20021 1.19185 1.19438 0.78979 0.96773 1.48577 0.86108 1.42120 1.07678 1.06151 1.65570 1.19675 0.88131 0.84842 0.84797 1.90530 1.69284 1.30940 1.55597 1.20790 0.93237 0.83013 1.03193 1.44733 1.05234 1.09203 1.79156 1.15819 0.82507 0.83211 0.77937 1.90893 1.55207 1.43242 1.58588 1.44889 1.07717 1.06202 1.80997 1.21256 0.80850 0.93312 1.02635 1.20858 0.93614 0.96071 0.97420 0.89049 1.21309 0.96296 1.04433 0.92102 1.23540 0.79894 0.74710 0.90306 1.90785 1.56012 1.42906 1.49601 1.84521 1.27184 1.79568 1.41939 1.22302 1.02218 0.93945 0.98527 1.23069 0.90754 1.03715 1.03782 1.22966 1.01684 0.93825 1.03137 0.91421 0.79228 0.89933 0.89927 0.75530 0.76924 0.91784 0.90639 0.87107 0.86819 0.72970 0.87077 0.88284 0.88461 0.88765 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.96 55.50 0.77 -24.41 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.24 27.74 -169.99 -4.71 14.52 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.60 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 9 N -0.58 -13.64 5.09 -10.96 -0.06 -13.69 16 10 C 0.44 9.85 7.85 -10.99 -0.09 9.76 16 11 O -0.58 -14.79 15.24 5.55 0.08 -14.70 16 12 C 0.13 2.29 6.15 -5.19 -0.03 2.25 16 13 N -0.73 -12.16 5.53 -66.42 -0.37 -12.53 16 14 C 0.71 11.61 8.57 -86.92 -0.74 10.87 16 15 O -0.60 -11.85 16.34 5.29 0.09 -11.76 16 16 N -0.74 -9.12 5.36 -65.23 -0.35 -9.47 16 17 C 0.14 1.53 4.86 -4.04 -0.02 1.51 16 18 C -0.06 -0.43 1.64 -90.62 -0.15 -0.58 16 19 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 20 C -0.10 -0.55 5.24 -27.88 -0.15 -0.69 16 21 C 0.47 3.65 7.88 36.00 0.28 3.93 16 22 O -0.51 -5.81 15.04 -18.75 -0.28 -6.09 16 23 O -0.52 -2.98 13.42 -39.26 -0.53 -3.51 16 24 C -0.15 -0.92 4.65 -90.63 -0.42 -1.34 16 25 C -0.18 -1.11 9.65 -26.73 -0.26 -1.37 16 26 C -0.18 -0.91 9.76 -26.73 -0.26 -1.17 16 27 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.41 6.64 7.45 -40.82 -0.30 6.33 16 32 H 0.40 4.06 7.75 -40.82 -0.32 3.75 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.98 6.15 -51.93 -0.32 0.66 16 35 H 0.11 0.45 8.14 -51.92 -0.42 0.02 16 36 H 0.11 0.38 7.57 -51.93 -0.39 -0.01 16 37 H 0.41 0.93 9.10 45.56 0.41 1.35 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 41 H 0.09 0.42 7.98 -51.93 -0.41 0.00 16 42 H 0.10 0.44 8.14 -51.92 -0.42 0.01 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -36.40 360.58 -6.90 -43.30 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -4.90 Total: 17.38 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -2.08 Total: 15.53 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.00 Total: -60.10 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.64 Total: -36.07 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.40 -6.90 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.007 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds