Wall clock time and date at job start Fri Apr 10 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86787 * 120.00191 * 2 1 4 4 H 1.48497 * 109.47369 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00147 * 3 2 1 6 6 H 1.48505 * 109.47123 * 150.00257 * 3 2 1 7 7 C 1.38949 * 119.99478 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00528 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99685 * 180.02562 * 7 2 1 10 10 C 1.34781 * 119.99978 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99807 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99924 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46980 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99847 * 179.97438 * 13 12 10 15 15 O 1.21585 * 119.99947 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99810 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00158 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47327 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.47001 * 54.99979 * 18 17 16 20 20 C 1.53005 * 109.46994 * 174.99735 * 18 17 16 21 21 C 1.50692 * 109.47251 * 294.62190 * 20 18 17 22 22 O 1.20824 * 120.00148 * 353.57862 * 21 20 18 23 23 O 1.34232 * 119.99937 * 173.58698 * 21 20 18 24 24 C 1.52995 * 109.47041 * 294.99955 * 18 17 16 25 25 C 1.52992 * 117.52029 * 105.16272 * 24 18 17 26 26 C 1.53002 * 117.49785 * 173.79480 * 24 18 17 27 27 H 0.96996 * 119.99993 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99986 * 359.97438 * 9 7 2 29 29 H 1.08992 * 109.47490 * 59.99523 * 12 10 9 30 30 H 1.09006 * 109.46937 * 299.99139 * 12 10 9 31 31 H 0.97001 * 120.00366 * 0.02562 * 13 12 10 32 32 H 0.97001 * 120.00403 * 0.02562 * 16 14 13 33 33 H 1.08994 * 109.46953 * 59.99944 * 17 16 14 34 34 H 1.09000 * 109.47052 * 300.00156 * 17 16 14 35 35 H 1.09008 * 109.46846 * 54.61773 * 20 18 17 36 36 H 1.08994 * 109.47131 * 174.61467 * 20 18 17 37 37 H 0.96705 * 116.99929 * 179.97438 * 23 21 20 38 38 H 1.09004 * 115.55010 * 319.46232 * 24 18 17 39 39 H 1.09003 * 117.50500 * 214.97003 * 25 24 18 40 40 H 1.08999 * 117.50009 * 359.97438 * 25 24 18 41 41 H 1.09000 * 117.49937 * 359.97385 * 26 24 18 42 42 H 1.09008 * 117.49700 * 144.99926 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6525 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3708 0.0001 13 7 6.0488 -3.7520 -0.0007 14 6 7.3739 -3.9983 -0.0005 15 8 8.1641 -3.0742 0.0010 16 7 7.8231 -5.2690 -0.0007 17 6 9.2634 -5.5368 0.0002 18 6 9.5012 -7.0482 -0.0010 19 1 8.9760 -7.4980 -0.8437 20 6 11.0001 -7.3286 -0.1259 21 6 11.4894 -6.8552 -1.4702 22 8 10.7011 -6.4530 -2.2927 23 8 12.8012 -6.8805 -1.7540 24 6 8.9772 -7.6479 1.3054 25 6 7.6645 -8.4316 1.2470 26 6 8.9897 -9.1721 1.4381 27 1 -0.4850 0.8400 -0.0004 28 1 3.8648 -0.3634 0.0004 29 1 5.9233 -1.8581 0.8909 30 1 5.9246 -1.8558 -0.8890 31 1 5.4185 -4.4893 -0.0023 32 1 7.1928 -6.0063 -0.0015 33 1 9.7139 -5.0985 0.8906 34 1 9.7152 -5.0977 -0.8893 35 1 11.5356 -6.7996 0.6626 36 1 11.1786 -8.3996 -0.0308 37 1 13.0671 -6.5671 -2.6294 38 1 9.1746 -7.0629 2.2037 39 1 6.9982 -8.3622 2.1069 40 1 7.1736 -8.5198 0.2779 41 1 9.3708 -9.7476 0.5945 42 1 9.1953 -9.5898 2.4237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:43 Heat of formation + Delta-G solvation = -167.365177 kcal Electronic energy + Delta-G solvation = -25447.449722 eV Core-core repulsion = 21427.046197 eV Total energy + Delta-G solvation = -4020.403525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55952 -41.09595 -40.17275 -39.01356 -37.07494 -36.31090 -35.73164 -35.28104 -33.84117 -33.39509 -29.77359 -28.06071 -26.15509 -24.57270 -23.25902 -22.39736 -21.92479 -21.47189 -20.83438 -20.56060 -19.41045 -18.97415 -17.86105 -17.59527 -17.43449 -16.95155 -16.80647 -16.63059 -16.26560 -15.96639 -15.70638 -15.31875 -15.08416 -14.92325 -14.34605 -14.18801 -14.16695 -13.99056 -13.85827 -13.41063 -13.22193 -12.96220 -12.53783 -12.44554 -12.36842 -12.23070 -12.00009 -11.96476 -11.58192 -11.54792 -11.45186 -11.06849 -10.90063 -10.65403 -10.41807 -10.31652 -9.78578 -8.45548 -6.07398 1.26938 1.31298 1.34340 1.43832 1.60348 1.78752 2.12421 2.16665 2.20639 2.79103 2.92172 3.10732 3.30039 3.56939 3.78640 3.89009 4.00198 4.15933 4.20954 4.32428 4.39905 4.44348 4.51769 4.55184 4.62420 4.75896 4.86116 4.90378 5.08870 5.14037 5.29200 5.33991 5.38290 5.48356 5.52316 5.69713 5.88155 5.95054 6.48969 6.78016 7.01386 7.03558 7.28570 7.52808 7.78084 8.70900 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022413 B = 0.002382 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.977003 B =11751.199967 C =12611.950340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.614 6.614 12 C 0.138 3.862 13 N -0.727 5.727 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.727 5.727 17 C 0.143 3.857 18 C -0.049 4.049 19 H 0.082 0.918 20 C -0.100 4.100 21 C 0.475 3.525 22 O -0.551 6.551 23 O -0.516 6.516 24 C -0.151 4.151 25 C -0.192 4.192 26 C -0.162 4.162 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.409 0.591 32 H 0.407 0.593 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.425 0.575 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.414 -15.974 1.994 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.234 3.766 11 O -0.500 6.500 12 C 0.009 3.991 13 N -0.385 5.385 14 C 0.404 3.596 15 O -0.514 6.514 16 N -0.383 5.383 17 C 0.019 3.981 18 C -0.068 4.068 19 H 0.101 0.899 20 C -0.137 4.137 21 C 0.320 3.680 22 O -0.442 6.442 23 O -0.329 6.329 24 C -0.169 4.169 25 C -0.229 4.229 26 C -0.199 4.199 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.247 0.753 32 H 0.243 0.757 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.287 0.713 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 27.203 -15.755 2.159 31.510 hybrid contribution -0.818 0.727 -0.799 1.355 sum 26.385 -15.028 1.360 30.395 Atomic orbital electron populations 1.69778 1.08003 1.29451 1.49314 1.26063 0.96445 1.02586 0.95734 0.85443 0.79590 0.77045 0.80047 1.18170 1.19749 1.15595 1.19030 0.80921 0.95283 1.50735 0.91818 1.41921 1.06151 1.07406 1.66329 1.20480 0.89980 0.83878 0.82257 1.90519 1.70769 1.32313 1.56359 1.20690 0.89273 0.84215 1.04881 1.44700 1.05559 1.08767 1.79469 1.15940 0.81897 0.84046 0.77763 1.90868 1.55796 1.44535 1.60211 1.44864 1.08864 1.05143 1.79381 1.21382 0.79345 0.95869 1.01553 1.20721 0.95109 0.93258 0.97699 0.89924 1.21405 0.94810 1.06295 0.91220 1.23998 0.79939 0.73517 0.90590 1.90776 1.57136 1.45146 1.51178 1.84495 1.26144 1.79159 1.43115 1.22197 1.02106 0.94845 0.97787 1.23116 0.91293 1.05003 1.03534 1.23042 0.99923 0.92834 1.04093 0.90917 0.77221 0.88003 0.88258 0.75322 0.75677 0.91534 0.92972 0.85259 0.84039 0.71344 0.87048 0.88728 0.88775 0.87685 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.96 21.66 0.30 -54.42 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.96 38.58 27.74 68.60 1.90 40.48 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 7 C -0.33 -18.95 10.16 84.04 0.85 -18.10 16 8 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 9 N -0.58 -27.02 5.09 -306.98 -1.56 -28.59 16 10 C 0.45 19.89 7.85 87.65 0.69 20.58 16 11 O -0.61 -32.04 15.24 -3.06 -0.05 -32.08 16 12 C 0.14 4.75 6.15 85.63 0.53 5.28 16 13 N -0.73 -23.67 5.53 -482.30 -2.67 -26.34 16 14 C 0.70 22.49 8.57 179.05 1.53 24.02 16 15 O -0.63 -24.28 16.34 -3.98 -0.07 -24.35 16 16 N -0.73 -17.31 5.36 -478.55 -2.56 -19.87 16 17 C 0.14 2.91 4.86 86.38 0.42 3.33 16 18 C -0.05 -0.61 1.64 -10.79 -0.02 -0.63 16 19 H 0.08 1.22 7.66 -2.39 -0.02 1.21 16 20 C -0.10 -0.81 5.24 29.85 0.16 -0.66 16 21 C 0.48 6.67 7.88 71.23 0.56 7.23 16 22 O -0.55 -12.56 15.04 21.97 0.33 -12.23 16 23 O -0.52 -4.99 13.42 -51.43 -0.69 -5.68 16 24 C -0.15 -1.53 4.65 -10.80 -0.05 -1.58 16 25 C -0.19 -2.16 9.65 30.59 0.30 -1.87 16 26 C -0.16 -1.21 9.76 30.60 0.30 -0.92 16 27 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 29 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 31 H 0.41 13.17 7.45 -92.71 -0.69 12.48 16 32 H 0.41 8.04 7.75 -92.71 -0.72 7.33 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.35 6.15 -2.39 -0.01 1.34 16 35 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.14 0.42 7.57 -2.39 -0.02 0.41 16 37 H 0.43 1.35 9.10 -74.05 -0.67 0.67 16 38 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.10 8.09 -2.39 -0.02 1.09 16 41 H 0.10 0.59 7.98 -2.39 -0.02 0.57 16 42 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -82.34 360.58 -0.90 -83.24 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -1.57 Total: 43.14 kcal Atomic # 6 Polarization: 30.97 SS G_CDS: 5.73 Total: 36.70 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -6.49 Total: -129.22 kcal Atomic # 8 Polarization: -73.87 SS G_CDS: -0.47 Total: -74.34 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Total: -82.34 -0.90 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.129 kcal (2) G-P(sol) polarization free energy of solvation -82.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds