Wall clock time and date at job start Fri Apr 10 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48507 * 109.47235 * 240.00387 * 3 2 1 5 5 H 1.48504 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47235 * 120.00301 * 3 2 1 7 7 C 1.38949 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99421 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99692 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00349 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00080 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47390 * 179.97438 * 12 10 9 14 14 C 1.34783 * 119.99663 * 179.97438 * 13 12 10 15 15 O 1.21584 * 120.00473 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99587 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99960 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47382 * 155.00007 * 17 16 14 19 19 C 1.52997 * 109.47493 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.46880 * 300.00006 * 19 18 17 21 21 C 1.50706 * 109.47215 * 179.97438 * 20 19 18 22 22 O 1.20825 * 119.99859 * 359.97438 * 21 20 19 23 23 O 1.34224 * 120.00295 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.47228 * 60.00058 * 20 19 18 25 25 C 1.52996 * 109.46947 * 274.99987 * 17 16 14 26 26 H 0.97005 * 120.00099 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00094 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47385 * 59.99261 * 12 10 9 29 29 H 1.09003 * 109.46692 * 299.99501 * 12 10 9 30 30 H 0.97000 * 120.00025 * 359.97438 * 13 12 10 31 31 H 0.97008 * 120.00392 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47205 * 35.00343 * 17 16 14 33 33 H 1.09003 * 109.47318 * 59.99674 * 18 17 16 34 34 H 1.09008 * 109.46908 * 300.00117 * 18 17 16 35 35 H 1.08997 * 109.47186 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47116 * 59.99536 * 19 18 17 37 37 H 1.09000 * 109.47459 * 300.00106 * 20 19 18 38 38 H 0.96700 * 117.00196 * 179.97438 * 23 21 20 39 39 H 1.09000 * 109.47766 * 59.99578 * 24 20 19 40 40 H 1.09005 * 109.47327 * 180.02562 * 24 20 19 41 41 H 1.09000 * 109.47091 * 299.99317 * 25 17 16 42 42 H 1.08997 * 109.47192 * 60.00121 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1957 -5.9764 -0.0027 14 6 1.7464 -7.2472 -0.0027 15 8 0.5510 -7.4694 -0.0019 16 7 2.6222 -8.2715 -0.0037 17 6 2.1339 -9.6528 -0.0043 18 6 3.1962 -10.5691 -0.6149 19 6 2.6859 -12.0115 -0.6162 20 6 2.3976 -12.4516 0.8205 21 6 1.8944 -13.8722 0.8193 22 8 1.7779 -14.4709 -0.2237 23 8 1.5747 -14.4719 1.9767 24 6 1.3353 -11.5354 1.4311 25 6 1.8460 -10.0925 1.4325 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0016 28 1 0.6173 -4.9205 -0.8923 29 1 0.6168 -4.9209 0.8876 30 1 3.1494 -5.7992 -0.0030 31 1 3.5759 -8.0943 -0.0048 32 1 1.2189 -9.7144 -0.5935 33 1 4.1112 -10.5075 -0.0259 34 1 3.4013 -10.2557 -1.6387 35 1 3.4429 -12.6642 -1.0508 36 1 1.7710 -12.0727 -1.2055 37 1 3.3124 -12.3903 1.4099 38 1 1.2561 -15.3835 1.9255 39 1 0.4203 -11.5965 0.8418 40 1 1.1301 -11.8486 2.4548 41 1 2.7610 -10.0310 2.0216 42 1 1.0891 -9.4398 1.8675 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:48 Heat of formation + Delta-G solvation = -207.601226 kcal Electronic energy + Delta-G solvation = -25308.444872 eV Core-core repulsion = 21286.296581 eV Total energy + Delta-G solvation = -4022.148291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66599 -41.15399 -40.11054 -38.91073 -37.09891 -36.22028 -35.23784 -35.19073 -33.35545 -31.80499 -31.10742 -28.89489 -26.43430 -25.03361 -23.75291 -22.37898 -21.67225 -21.33159 -20.89680 -20.08396 -19.43156 -18.96208 -17.82546 -17.54238 -17.38698 -16.91230 -16.67815 -16.47998 -16.05646 -15.74356 -15.61186 -15.17612 -15.12846 -14.84446 -14.54351 -14.02034 -13.92399 -13.70934 -13.52329 -13.40171 -13.20472 -12.88511 -12.61288 -12.55380 -12.45521 -12.31649 -12.13049 -12.12244 -11.54692 -11.52834 -11.48086 -11.37305 -11.19282 -10.53592 -10.34134 -10.08640 -9.76369 -8.49424 -5.99706 1.20736 1.39395 1.43514 1.53894 1.64558 1.91890 2.15883 2.16880 2.30123 3.06879 3.17813 3.35628 3.58965 3.65698 3.98545 4.00902 4.16813 4.23310 4.35978 4.39421 4.46349 4.48722 4.49177 4.54356 4.71592 4.85336 4.99163 5.09881 5.16189 5.19340 5.32547 5.33646 5.37732 5.41004 5.61664 5.65312 5.93356 6.03116 6.49716 7.00842 7.04851 7.09846 7.45046 7.59560 7.96158 8.67199 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.050836 B = 0.001907 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.661802 B =14681.249501 C =14878.233400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.632 6.632 16 N -0.727 5.727 17 C 0.159 3.841 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.077 4.077 21 C 0.487 3.513 22 O -0.552 6.552 23 O -0.512 6.512 24 C -0.100 4.100 25 C -0.124 4.124 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.410 0.590 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.426 0.574 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -25.539 3.430 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.514 6.514 16 N -0.382 5.382 17 C 0.054 3.946 18 C -0.152 4.152 19 C -0.135 4.135 20 C -0.096 4.096 21 C 0.331 3.669 22 O -0.443 6.443 23 O -0.326 6.326 24 C -0.138 4.138 25 C -0.162 4.162 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.248 0.752 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.287 0.713 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.940 -25.320 3.173 25.991 hybrid contribution 0.035 0.496 -0.151 0.519 sum 4.975 -24.824 3.022 25.497 Atomic orbital electron populations 1.69679 1.07010 1.29669 1.49269 1.26140 0.96550 1.02720 0.95831 0.84917 0.77690 0.76217 0.79094 1.19500 1.19719 1.19459 1.19706 0.92988 0.83538 1.50439 0.89493 1.41837 1.09594 1.04614 1.63493 1.20425 0.88126 0.85899 0.83446 1.90464 1.15134 1.87565 1.58000 1.20555 0.91043 0.83153 1.03894 1.44697 1.10952 1.03291 1.79306 1.15995 0.85252 0.80810 0.77597 1.90882 1.15795 1.84667 1.60045 1.45027 1.09253 1.04521 1.79437 1.20963 0.98079 0.78710 0.96876 1.21751 0.98215 0.92727 1.02520 1.21349 1.02473 0.95804 0.93897 1.21194 1.01868 0.86243 1.00271 1.23796 0.72603 0.89934 0.80539 1.90723 1.51684 1.67237 1.34680 1.84512 1.77353 1.35319 1.35367 1.21424 0.96917 0.93253 1.02228 1.21898 1.02299 0.95434 0.96607 0.91097 0.76724 0.89271 0.89162 0.75193 0.75239 0.91813 0.88447 0.90164 0.89771 0.92205 0.84502 0.71274 0.92320 0.89190 0.89392 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 13.05 21.66 0.28 -48.32 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.47 9.68 84.04 0.81 -17.66 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.99 5.29 -306.99 -1.62 -29.61 16 10 C 0.43 19.83 7.85 87.66 0.69 20.52 16 11 O -0.62 -31.68 15.24 -3.07 -0.05 -31.73 16 12 C 0.14 5.19 6.15 85.63 0.53 5.71 16 13 N -0.72 -23.19 5.53 -482.29 -2.67 -25.86 16 14 C 0.70 21.40 8.53 179.05 1.53 22.93 16 15 O -0.63 -23.88 16.01 -3.98 -0.06 -23.95 16 16 N -0.73 -14.93 5.08 -457.82 -2.33 -17.26 16 17 C 0.16 2.78 2.45 44.99 0.11 2.90 16 18 C -0.11 -1.24 5.39 30.59 0.16 -1.08 16 19 C -0.10 -1.16 4.49 30.59 0.14 -1.03 16 20 C -0.08 -0.82 2.63 -11.54 -0.03 -0.85 16 21 C 0.49 6.88 7.63 71.24 0.54 7.42 16 22 O -0.55 -11.70 16.74 21.97 0.37 -11.33 16 23 O -0.51 -4.89 13.32 -51.35 -0.68 -5.57 16 24 C -0.10 -1.28 5.14 30.61 0.16 -1.12 16 25 C -0.12 -1.94 5.50 30.61 0.17 -1.77 16 26 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 27 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 28 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.41 12.61 7.45 -92.71 -0.69 11.92 16 31 H 0.41 6.12 8.62 -92.70 -0.80 5.32 16 32 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 35 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 37 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.43 0.85 9.10 -74.06 -0.67 0.18 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.00 8.11 -2.38 -0.02 0.98 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.84 357.64 -1.26 -75.10 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.80 Total: 39.16 kcal Atomic # 6 Polarization: 30.56 SS G_CDS: 5.27 Total: 35.83 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -6.33 Total: -121.05 kcal Atomic # 8 Polarization: -72.15 SS G_CDS: -0.43 Total: -72.58 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -73.84 -1.26 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.505 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds