Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47103 * 2 1 4 4 C 1.42897 * 114.00000 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47371 * 330.00025 * 4 3 2 6 6 C 1.53003 * 109.47041 * 89.99956 * 4 3 2 7 7 C 1.50704 * 109.47162 * 209.99982 * 4 3 2 8 8 N 1.29949 * 126.28643 * 315.02314 * 7 4 3 9 9 O 1.21300 * 110.25150 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.81055 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.54939 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.46978 * 269.97686 * 11 10 9 13 13 C 1.36937 * 120.00162 * 91.00350 * 12 11 10 14 14 H 1.07993 * 119.99660 * 7.67339 * 13 12 11 15 15 C 1.38810 * 120.00282 * 187.67406 * 13 12 11 16 16 N 1.31625 * 119.99699 * 25.24205 * 15 13 12 17 17 Si 1.86791 * 120.00218 * 205.24329 * 15 13 12 18 18 H 1.48504 * 109.47307 * 59.99857 * 17 15 13 19 19 H 1.48501 * 109.47559 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47171 * 300.00253 * 17 15 13 21 21 C 1.46498 * 119.99978 * 271.00154 * 12 11 10 22 22 C 1.50705 * 109.47389 * 90.00275 * 21 12 11 23 23 O 1.20824 * 119.99592 * 359.97438 * 22 21 12 24 24 O 1.34228 * 119.99801 * 179.97438 * 22 21 12 25 25 C 1.45207 * 116.99639 * 179.97438 * 24 22 21 26 26 N 1.31135 * 106.90069 * 359.77183 * 10 9 8 27 27 H 1.08998 * 109.47285 * 60.00228 * 1 2 3 28 28 H 1.08997 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47303 * 300.00118 * 1 2 3 30 30 H 1.08998 * 109.47303 * 239.99882 * 2 1 3 31 31 H 1.09001 * 109.46916 * 119.99426 * 2 1 3 32 32 H 1.09003 * 109.46979 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47170 * 299.99843 * 6 4 3 34 34 H 1.08999 * 109.46953 * 60.00376 * 6 4 3 35 35 H 1.08993 * 109.47160 * 29.98062 * 11 10 9 36 36 H 1.09002 * 109.46667 * 149.97860 * 11 10 9 37 37 H 0.97005 * 119.99726 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.47118 * 210.00453 * 21 12 11 39 39 H 1.09001 * 109.47236 * 329.99953 * 21 12 11 40 40 H 1.08996 * 109.47041 * 180.02562 * 25 24 22 41 41 H 1.09001 * 109.46784 * 299.99939 * 25 24 22 42 42 H 1.08994 * 109.46651 * 59.99989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8342 2.7265 0.7110 8 7 3.2977 3.8998 0.5554 9 8 3.8468 4.7108 1.2711 10 6 4.8147 4.1136 1.9728 11 6 5.7318 4.7680 2.9739 12 7 6.9315 5.2573 2.2901 13 6 6.9657 6.5344 1.7971 14 1 6.1615 7.2203 2.0185 15 6 8.0340 6.9472 1.0128 16 7 8.7332 6.0620 0.3345 17 14 8.4793 8.7589 0.9199 18 1 8.8181 9.2556 2.2778 19 1 9.6484 8.9359 0.0216 20 1 7.3250 9.5257 0.3862 21 6 8.0946 4.3804 2.1339 22 6 7.9767 3.6151 0.8410 23 8 7.0191 3.7845 0.1239 24 8 8.9355 2.7454 0.4861 25 6 8.7557 2.0432 -0.7721 26 7 4.8112 2.8487 1.6271 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.0264 1.5867 -1.4413 33 1 3.6482 0.5842 -1.9555 34 1 3.5076 2.3586 -1.9558 35 1 5.2164 5.6040 3.4465 36 1 6.0178 4.0409 3.7339 37 1 9.4795 6.3506 -0.2139 38 1 9.0036 4.9818 2.1185 39 1 8.1363 3.6801 2.9681 40 1 9.5991 1.3730 -0.9380 41 1 7.8332 1.4636 -0.7360 42 1 8.6994 2.7655 -1.5864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -31.347262 kcal Electronic energy + Delta-G solvation = -27781.905145 eV Core-core repulsion = 23767.399800 eV Total energy + Delta-G solvation = -4014.505345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.61260 -38.96666 -38.44464 -36.34997 -35.01314 -34.62968 -32.93599 -31.81267 -30.75974 -29.88206 -28.40858 -26.71236 -26.03659 -24.63558 -23.06916 -22.79767 -21.99367 -20.35772 -19.74858 -17.32121 -17.09969 -16.86008 -16.66469 -16.24240 -15.70413 -15.50927 -15.19941 -15.04463 -14.79355 -14.06785 -13.78725 -13.52440 -13.36055 -13.17394 -12.73289 -12.44117 -12.24099 -12.13073 -12.01025 -11.78300 -11.55983 -11.46122 -11.14408 -11.10596 -11.01381 -10.87809 -10.71790 -10.53621 -10.31847 -10.22668 -10.11820 -9.71990 -9.60877 -9.26631 -9.10899 -8.64909 -7.47560 -6.14163 -3.43561 2.06458 2.94721 3.29330 3.35721 3.36878 3.47872 3.76675 3.91675 4.00387 4.34249 4.39406 4.80577 4.89458 4.99900 5.08730 5.14090 5.17746 5.22308 5.29701 5.47854 5.67534 5.75129 5.77772 5.78179 5.85464 5.95180 5.97852 6.02378 6.06146 6.15839 6.21553 6.30232 6.50847 6.60013 6.86362 6.92343 7.15538 7.51673 7.74113 7.89598 8.76956 9.06399 9.32357 9.47519 9.82171 10.95495 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.004456 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.135553 B = 6282.170622 C = 7092.115621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.190 3.810 5 H 0.084 0.916 6 C -0.164 4.164 7 C 0.162 3.838 8 N -0.379 5.379 9 O 0.073 5.927 10 C 0.190 3.810 11 C 0.221 3.779 12 N -0.542 5.542 13 C -0.270 4.270 14 H 0.091 0.909 15 C 0.011 3.989 16 N -0.894 5.894 17 Si 0.918 3.082 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.182 3.818 22 C 0.470 3.530 23 O -0.500 6.500 24 O -0.382 6.382 25 C 0.046 3.954 26 N -0.491 5.491 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -10.855 2.641 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.131 3.869 5 H 0.102 0.898 6 C -0.222 4.222 7 C -0.112 4.112 8 N -0.089 5.089 9 O 0.016 5.984 10 C -0.033 4.033 11 C 0.089 3.911 12 N -0.260 5.260 13 C -0.398 4.398 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.537 5.537 17 Si 0.746 3.254 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.053 3.947 22 C 0.310 3.690 23 O -0.385 6.385 24 O -0.299 6.299 25 C -0.049 4.049 26 N -0.226 5.226 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.360 -10.867 1.743 12.712 hybrid contribution 0.485 0.606 -0.978 1.248 sum -5.875 -10.262 0.766 11.849 Atomic orbital electron populations 1.21725 0.93641 1.02035 1.03274 1.22537 0.95683 0.83730 1.00114 1.88000 1.19866 1.26408 1.95039 1.19789 0.81472 0.91004 0.94665 0.89821 1.22191 1.02403 1.02697 0.94916 1.25022 0.93750 0.94846 0.97574 1.74452 1.19809 1.00707 1.13905 1.85242 1.37335 1.35702 1.40146 1.31205 0.89075 0.86869 0.96142 1.20132 0.84066 0.97344 0.89511 1.44841 1.07866 1.10134 1.63188 1.19447 1.06814 0.84850 1.28701 0.89118 1.24880 0.99188 0.98784 0.96055 1.69880 1.22093 1.33445 1.28243 0.86114 0.77886 0.83673 0.77685 1.20442 1.21596 1.20689 1.20711 0.93463 0.91599 0.88897 1.25092 0.78993 0.74905 0.90017 1.90478 1.33162 1.61901 1.52931 1.86514 1.50867 1.53861 1.38701 1.22804 1.00641 0.95625 0.85788 1.71638 1.19554 1.17264 1.14176 0.91791 0.91131 0.91850 0.93232 0.93260 0.90771 0.91754 0.91347 0.88748 0.88895 0.92719 0.86135 0.92247 0.90218 0.93772 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.64 6.47 37.16 0.24 0.89 16 3 O -0.37 -6.08 9.97 -35.23 -0.35 -6.43 16 4 C 0.19 3.23 3.27 -27.88 -0.09 3.14 16 5 H 0.08 1.27 7.79 -51.93 -0.40 0.87 16 6 C -0.16 -2.59 9.51 37.16 0.35 -2.24 16 7 C 0.16 3.40 7.10 -156.37 -1.11 2.29 16 8 N -0.38 -8.62 12.16 30.90 0.38 -8.24 16 9 O 0.07 1.66 11.31 18.11 0.20 1.87 16 10 C 0.19 4.05 6.81 -13.05 -0.09 3.96 16 11 C 0.22 4.10 6.33 -5.19 -0.03 4.07 16 12 N -0.54 -12.15 2.08 -175.98 -0.37 -12.52 16 13 C -0.27 -6.70 9.70 -15.06 -0.15 -6.84 16 14 H 0.09 2.19 7.92 -52.49 -0.42 1.77 16 15 C 0.01 0.27 4.90 -17.43 -0.09 0.19 16 16 N -0.89 -23.97 9.00 55.49 0.50 -23.47 16 17 Si 0.92 20.42 29.62 -169.99 -5.04 15.39 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.18 3.99 5.58 -5.19 -0.03 3.96 16 22 C 0.47 11.20 6.05 36.01 0.22 11.42 16 23 O -0.50 -13.36 13.77 -18.75 -0.26 -13.62 16 24 O -0.38 -8.29 10.57 -39.25 -0.41 -8.71 16 25 C 0.05 0.84 10.56 101.05 1.07 1.91 16 26 N -0.49 -10.54 10.73 -9.86 -0.11 -10.64 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.80 7.87 -51.93 -0.41 0.39 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.52 8.01 -51.93 -0.42 1.11 16 36 H 0.09 1.44 7.91 -51.93 -0.41 1.03 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.12 2.82 6.25 -51.93 -0.32 2.50 16 39 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 42 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -32.63 360.13 -5.48 -38.11 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.14 Total: 1.16 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 0.68 Total: 21.68 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.40 Total: -54.87 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.82 Total: -26.89 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.04 Total: 15.39 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.63 -5.48 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.761 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds