Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47103 * 2 1 4 4 C 1.42897 * 114.00000 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47371 * 330.00025 * 4 3 2 6 6 C 1.53003 * 109.47041 * 89.99956 * 4 3 2 7 7 C 1.50704 * 109.47162 * 209.99982 * 4 3 2 8 8 N 1.29949 * 126.28643 * 315.02314 * 7 4 3 9 9 O 1.21300 * 110.25150 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.81055 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.54939 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.46978 * 269.97686 * 11 10 9 13 13 C 1.36937 * 120.00162 * 91.00350 * 12 11 10 14 14 H 1.07993 * 119.99660 * 7.67339 * 13 12 11 15 15 C 1.38810 * 120.00282 * 187.67406 * 13 12 11 16 16 N 1.31625 * 119.99699 * 25.24205 * 15 13 12 17 17 Si 1.86791 * 120.00218 * 205.24329 * 15 13 12 18 18 H 1.48504 * 109.47307 * 59.99857 * 17 15 13 19 19 H 1.48501 * 109.47559 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47171 * 300.00253 * 17 15 13 21 21 C 1.46498 * 119.99978 * 271.00154 * 12 11 10 22 22 C 1.50705 * 109.47389 * 90.00275 * 21 12 11 23 23 O 1.20824 * 119.99592 * 359.97438 * 22 21 12 24 24 O 1.34228 * 119.99801 * 179.97438 * 22 21 12 25 25 C 1.45207 * 116.99639 * 179.97438 * 24 22 21 26 26 N 1.31135 * 106.90069 * 359.77183 * 10 9 8 27 27 H 1.08998 * 109.47285 * 60.00228 * 1 2 3 28 28 H 1.08997 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47303 * 300.00118 * 1 2 3 30 30 H 1.08998 * 109.47303 * 239.99882 * 2 1 3 31 31 H 1.09001 * 109.46916 * 119.99426 * 2 1 3 32 32 H 1.09003 * 109.46979 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47170 * 299.99843 * 6 4 3 34 34 H 1.08999 * 109.46953 * 60.00376 * 6 4 3 35 35 H 1.08993 * 109.47160 * 29.98062 * 11 10 9 36 36 H 1.09002 * 109.46667 * 149.97860 * 11 10 9 37 37 H 0.97005 * 119.99726 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.47118 * 210.00453 * 21 12 11 39 39 H 1.09001 * 109.47236 * 329.99953 * 21 12 11 40 40 H 1.08996 * 109.47041 * 180.02562 * 25 24 22 41 41 H 1.09001 * 109.46784 * 299.99939 * 25 24 22 42 42 H 1.08994 * 109.46651 * 59.99989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9398 1.5002 -1.4417 7 6 3.8342 2.7265 0.7110 8 7 3.2977 3.8998 0.5554 9 8 3.8468 4.7108 1.2711 10 6 4.8147 4.1136 1.9728 11 6 5.7318 4.7680 2.9739 12 7 6.9315 5.2573 2.2901 13 6 6.9657 6.5344 1.7971 14 1 6.1615 7.2203 2.0185 15 6 8.0340 6.9472 1.0128 16 7 8.7332 6.0620 0.3345 17 14 8.4793 8.7589 0.9199 18 1 8.8181 9.2556 2.2778 19 1 9.6484 8.9359 0.0216 20 1 7.3250 9.5257 0.3862 21 6 8.0946 4.3804 2.1339 22 6 7.9767 3.6151 0.8410 23 8 7.0191 3.7845 0.1239 24 8 8.9355 2.7454 0.4861 25 6 8.7557 2.0432 -0.7721 26 7 4.8112 2.8487 1.6271 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.0264 1.5867 -1.4413 33 1 3.6482 0.5842 -1.9555 34 1 3.5076 2.3586 -1.9558 35 1 5.2164 5.6040 3.4465 36 1 6.0178 4.0409 3.7339 37 1 9.4795 6.3506 -0.2139 38 1 9.0036 4.9818 2.1185 39 1 8.1363 3.6801 2.9681 40 1 9.5991 1.3730 -0.9380 41 1 7.8332 1.4636 -0.7360 42 1 8.6994 2.7655 -1.5864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080896967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -53.483198 kcal Electronic energy + Delta-G solvation = -27782.865031 eV Core-core repulsion = 23767.399800 eV Total energy + Delta-G solvation = -4015.465232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.27271 -40.74400 -39.62506 -38.04522 -36.59740 -36.42738 -34.47082 -33.29290 -32.28016 -31.04670 -30.07561 -28.35507 -27.70231 -26.04839 -24.76469 -23.75740 -23.60014 -21.92192 -21.43811 -19.05239 -18.81241 -18.47938 -18.03399 -17.84226 -17.26392 -16.92368 -16.72445 -16.53026 -16.40165 -15.67807 -15.41382 -15.19422 -14.53924 -14.35186 -14.05557 -13.93658 -13.69906 -13.66796 -13.31957 -13.04193 -12.88636 -12.83466 -12.71915 -12.64610 -12.54638 -12.30955 -12.17142 -12.09281 -12.07905 -11.96003 -11.83058 -11.35852 -11.10905 -10.86925 -10.71603 -10.51595 -9.30080 -8.04695 -5.34956 0.41581 1.37469 1.52266 1.54713 1.61324 2.07633 2.17523 2.26741 2.35330 2.55630 3.02789 3.21104 3.38258 3.47595 3.73109 3.91748 4.13727 4.26597 4.28568 4.36066 4.41455 4.42845 4.48084 4.50086 4.55111 4.59705 4.65882 4.73783 4.85951 4.90886 4.95055 4.99479 5.02749 5.16852 5.22066 5.24476 5.62381 5.97996 6.06585 6.08339 6.89758 7.40642 7.49837 7.68454 7.97653 9.02874 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.004456 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.135553 B = 6282.170622 C = 7092.115621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 O -0.397 6.397 4 C 0.190 3.810 5 H 0.104 0.896 6 C -0.155 4.155 7 C 0.159 3.841 8 N -0.405 5.405 9 O 0.051 5.949 10 C 0.189 3.811 11 C 0.217 3.783 12 N -0.553 5.553 13 C -0.272 4.272 14 H 0.093 0.907 15 C -0.037 4.037 16 N -0.920 5.920 17 Si 0.975 3.025 18 H -0.264 1.264 19 H -0.301 1.301 20 H -0.288 1.288 21 C 0.180 3.820 22 C 0.469 3.531 23 O -0.536 6.536 24 O -0.387 6.387 25 C 0.046 3.954 26 N -0.498 5.498 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.252 0.748 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.046 0.954 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 -12.495 3.546 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.317 6.317 4 C 0.131 3.869 5 H 0.121 0.879 6 C -0.213 4.213 7 C -0.114 4.114 8 N -0.119 5.119 9 O -0.002 6.002 10 C -0.034 4.034 11 C 0.087 3.913 12 N -0.271 5.271 13 C -0.401 4.401 14 H 0.111 0.889 15 C -0.233 4.233 16 N -0.565 5.565 17 Si 0.803 3.197 18 H -0.189 1.189 19 H -0.228 1.228 20 H -0.214 1.214 21 C 0.052 3.948 22 C 0.311 3.689 23 O -0.423 6.423 24 O -0.304 6.304 25 C -0.049 4.049 26 N -0.234 5.234 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.064 0.936 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.641 -12.504 2.694 14.412 hybrid contribution 0.503 0.983 -1.261 1.676 sum -6.139 -11.521 1.433 13.133 Atomic orbital electron populations 1.21759 0.92427 1.03738 1.02473 1.22893 0.96687 0.81833 1.01645 1.87984 1.19034 1.29466 1.95171 1.19936 0.82457 0.89721 0.94805 0.87875 1.22118 1.00966 1.03651 0.94569 1.25861 0.92889 0.95784 0.96907 1.74436 1.21107 1.01488 1.14899 1.85198 1.38122 1.36238 1.40688 1.31661 0.88906 0.87050 0.95808 1.20588 0.82722 0.99198 0.88829 1.44887 1.09315 1.09861 1.63003 1.19721 1.06446 0.86325 1.27651 0.88898 1.25522 0.99646 1.01727 0.96449 1.70030 1.22526 1.34551 1.29431 0.85239 0.76640 0.80011 0.77830 1.18917 1.22788 1.21410 1.20771 0.92800 0.91805 0.89438 1.25463 0.78539 0.74670 0.90244 1.90461 1.34608 1.63145 1.54116 1.86483 1.50184 1.53633 1.40101 1.23039 1.02852 0.95324 0.83661 1.71648 1.19681 1.17472 1.14553 0.92380 0.88140 0.92878 0.91250 0.92087 0.92492 0.87875 0.93643 0.86327 0.85266 0.93808 0.87813 0.88442 0.85749 0.93558 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 0.93 6.47 71.98 0.47 1.39 16 3 O -0.40 -12.41 9.97 -148.98 -1.49 -13.89 16 4 C 0.19 6.26 3.27 29.85 0.10 6.36 16 5 H 0.10 2.93 7.79 -2.39 -0.02 2.91 16 6 C -0.15 -4.77 9.51 71.98 0.68 -4.08 16 7 C 0.16 6.68 7.10 138.46 0.98 7.67 16 8 N -0.41 -18.70 12.16 -60.31 -0.73 -19.44 16 9 O 0.05 2.33 11.31 74.85 0.85 3.18 16 10 C 0.19 7.91 6.81 88.38 0.60 8.51 16 11 C 0.22 7.66 6.33 85.64 0.54 8.20 16 12 N -0.55 -24.19 2.08 -710.69 -1.48 -25.67 16 13 C -0.27 -13.42 9.70 84.03 0.82 -12.60 16 14 H 0.09 4.43 7.92 -2.91 -0.02 4.41 16 15 C -0.04 -1.91 4.90 84.86 0.42 -1.49 16 16 N -0.92 -50.16 9.00 21.65 0.19 -49.96 16 17 Si 0.97 42.37 29.62 68.60 2.03 44.40 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 C 0.18 7.73 5.58 85.63 0.48 8.21 16 22 C 0.47 22.22 6.05 71.24 0.43 22.65 16 23 O -0.54 -28.86 13.77 21.97 0.30 -28.56 16 24 O -0.39 -16.50 10.57 -51.40 -0.54 -17.04 16 25 C 0.05 1.61 10.56 113.37 1.20 2.80 16 26 N -0.50 -21.00 10.73 -303.17 -3.25 -24.26 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.15 7.87 -2.39 -0.02 1.14 16 31 H 0.06 1.11 8.08 -2.39 -0.02 1.10 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 2.30 7.87 -2.39 -0.02 2.29 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 3.57 8.01 -2.39 -0.02 3.55 16 36 H 0.13 3.60 7.91 -2.39 -0.02 3.58 16 37 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 38 H 0.10 4.84 6.25 -2.38 -0.01 4.83 16 39 H 0.10 3.36 7.90 -2.39 -0.02 3.34 16 40 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 42 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 Total: -1.00 -71.95 360.13 4.36 -67.59 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.02 Total: 17.83 kcal Atomic # 6 Polarization: 38.37 SS G_CDS: 7.45 Total: 45.82 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -5.27 Total: -119.33 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.88 Total: -56.32 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -71.95 4.36 -67.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.110 kcal (2) G-P(sol) polarization free energy of solvation -71.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds