Wall clock time and date at job start Fri Apr 10 2020 18:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47460 * 2 1 4 4 C 1.50697 * 109.47258 * 120.00339 * 2 1 3 5 5 H 1.08001 * 120.00643 * 119.99610 * 4 2 1 6 6 C 1.37881 * 119.99672 * 299.99811 * 4 2 1 7 7 N 1.31514 * 120.00111 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99891 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46982 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47354 * 119.99655 * 8 6 4 11 11 H 1.48502 * 109.47126 * 240.00295 * 8 6 4 12 12 N 1.46500 * 109.46896 * 240.00104 * 2 1 3 13 13 C 1.46506 * 120.00202 * 299.99940 * 12 2 1 14 14 C 1.34771 * 120.00192 * 120.00047 * 12 2 1 15 15 O 1.21595 * 119.99883 * 359.97438 * 14 12 2 16 16 N 1.34772 * 120.00184 * 179.97438 * 14 12 2 17 17 C 1.39955 * 120.00277 * 174.70577 * 16 14 12 18 18 C 1.38935 * 120.03308 * 326.52945 * 17 16 14 19 19 C 1.38133 * 120.05695 * 179.74259 * 18 17 16 20 20 C 1.38187 * 120.13805 * 0.55313 * 19 18 17 21 21 C 1.38851 * 120.07083 * 359.69923 * 20 19 18 22 22 N 1.40205 * 120.03356 * 180.02562 * 21 20 19 23 23 C 1.36569 * 125.67409 * 179.66989 * 22 21 20 24 24 C 1.34848 * 108.20115 * 179.88915 * 23 22 21 25 25 C 1.40942 * 107.46712 * 0.36995 * 24 23 22 26 26 C 1.34849 * 107.46842 * 359.76568 * 25 24 23 27 27 C 1.38722 * 120.04084 * 146.79968 * 17 16 14 28 28 H 1.08998 * 109.47305 * 59.99794 * 1 2 3 29 29 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46815 * 300.00046 * 1 2 3 31 31 H 0.97003 * 119.99584 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46631 * 89.99994 * 13 12 2 33 33 H 1.08999 * 109.47041 * 210.00308 * 13 12 2 34 34 H 1.09002 * 109.46860 * 330.00511 * 13 12 2 35 35 H 0.96999 * 120.00522 * 354.70826 * 16 14 12 36 36 H 1.08000 * 119.96954 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.93323 * 180.24821 * 19 18 17 38 38 H 1.07994 * 119.96697 * 179.72034 * 20 19 18 39 39 H 1.07999 * 125.89390 * 0.02562 * 23 22 21 40 40 H 1.07995 * 126.26443 * 180.13950 * 24 23 22 41 41 H 1.08005 * 126.26484 * 179.77109 * 25 24 23 42 42 H 1.07997 * 125.89700 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.06929 * 359.95622 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 3.0865 1.1286 -1.8912 16 7 3.2427 -0.6711 -3.1835 17 6 3.9536 0.0369 -4.1593 18 6 3.6464 1.3675 -4.4149 19 6 4.3512 2.0684 -5.3742 20 6 5.3558 1.4456 -6.0901 21 6 5.6639 0.1145 -5.8428 22 7 6.6837 -0.5164 -6.5693 23 6 7.0851 -1.8129 -6.4170 24 6 8.0839 -2.0500 -7.2914 25 6 8.3145 -0.8562 -8.0042 26 6 7.4446 0.0652 -7.5429 27 6 4.9619 -0.5906 -4.8761 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7088 1.1612 3.4845 32 1 0.7375 -2.1443 -1.9994 33 1 2.4628 -2.5819 -1.9864 34 1 1.5294 -2.5969 -0.4709 35 1 3.0737 -1.6192 -3.2992 36 1 2.8583 1.8554 -3.8606 37 1 4.1134 3.1038 -5.5685 38 1 5.9021 1.9949 -6.8426 39 1 6.6722 -2.5256 -5.7185 40 1 8.6130 -2.9828 -7.4191 41 1 9.0527 -0.7068 -8.7783 42 1 7.3641 1.0866 -7.8840 43 1 5.2002 -1.6260 -4.6818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086285595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:22 Heat of formation + Delta-G solvation = 68.612211 kcal Electronic energy + Delta-G solvation = -25120.779679 eV Core-core repulsion = 21553.750916 eV Total energy + Delta-G solvation = -3567.028763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72917 -40.28630 -38.48339 -35.70435 -34.62145 -33.12247 -32.67286 -30.46252 -29.29860 -28.88019 -28.22781 -26.25155 -25.27557 -23.43424 -23.05265 -21.56486 -20.27181 -20.00873 -19.24247 -18.59497 -17.59049 -16.58627 -16.24270 -15.90292 -15.33767 -15.12050 -15.00404 -14.66158 -14.28948 -14.08379 -13.76488 -13.48641 -13.33042 -12.86228 -12.60335 -12.53711 -12.47960 -12.30791 -11.89699 -11.70961 -11.58676 -11.45242 -11.11967 -10.90662 -10.75000 -10.44613 -10.29606 -10.22520 -9.77577 -9.41718 -9.21700 -8.49060 -8.44204 -8.39963 -7.93249 -7.63271 -6.12897 -4.20944 0.91674 1.22538 2.38330 2.64387 2.83914 3.09063 3.22599 3.31122 3.33833 3.54089 3.92338 4.28891 4.42104 4.61784 4.75044 4.90554 4.97048 5.10930 5.18804 5.26297 5.34995 5.40073 5.46407 5.56564 5.68926 5.87709 5.88925 6.05193 6.15342 6.18726 6.29449 6.32699 6.51227 6.64863 6.74145 6.75457 6.92501 6.99550 7.07242 7.07526 7.32234 7.37359 7.61789 7.72996 7.99375 8.14204 8.51263 8.79259 9.07933 9.45978 10.92500 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.002766 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.178186 B =10121.978808 C =10631.301543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.271 3.729 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.696 3.304 15 O -0.575 6.575 16 N -0.695 5.695 17 C 0.214 3.786 18 C -0.132 4.132 19 C -0.070 4.070 20 C -0.166 4.166 21 C 0.154 3.846 22 N -0.392 5.392 23 C -0.014 4.014 24 C -0.195 4.195 25 C -0.196 4.196 26 C -0.014 4.014 27 C -0.179 4.179 28 H 0.011 0.989 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.263 0.737 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 -4.464 -18.837 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.171 3.829 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.335 5.335 13 C -0.061 4.061 14 C 0.398 3.602 15 O -0.453 6.453 16 N -0.344 5.344 17 C 0.116 3.884 18 C -0.153 4.153 19 C -0.090 4.090 20 C -0.187 4.187 21 C 0.061 3.939 22 N -0.063 5.063 23 C -0.141 4.141 24 C -0.219 4.219 25 C -0.220 4.220 26 C -0.141 4.141 27 C -0.201 4.201 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.241 0.759 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.181 0.819 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.181 0.819 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.824 -3.402 -18.255 19.783 hybrid contribution 0.303 -1.152 0.878 1.480 sum 7.127 -4.555 -17.377 19.326 Atomic orbital electron populations 1.22102 0.98035 0.99464 1.00903 1.18937 0.90752 0.94349 0.78823 0.91652 1.21351 1.31897 1.13118 0.90265 0.92205 1.24887 0.94897 0.94979 0.98980 1.69885 1.36263 1.22554 1.23753 0.86428 0.78602 0.79576 0.82707 1.19842 1.20863 1.20900 1.47650 1.50347 1.11628 1.23893 1.21573 0.98356 0.83407 1.02777 1.15970 0.79655 0.85140 0.79419 1.90897 1.62223 1.15396 1.76736 1.43043 1.58146 1.12891 1.20308 1.17225 0.90541 0.92148 0.88451 1.21370 1.02023 0.93718 0.98140 1.20871 0.94131 0.99769 0.94197 1.20683 1.01637 0.92714 1.03664 1.17478 0.90022 0.92470 0.93911 1.41650 1.26064 1.10107 1.28471 1.21917 1.01441 0.85923 1.04798 1.20966 1.01205 0.99389 1.00377 1.20965 1.02892 0.93740 1.04376 1.21891 0.96950 0.99882 0.95345 1.20343 0.97964 1.01221 1.00613 0.96941 0.95135 0.88676 0.92657 0.93621 0.93593 0.89493 0.75891 0.83756 0.84881 0.85536 0.81940 0.84342 0.84347 0.81869 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.74 2.64 -69.08 -0.18 6.56 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -13.91 7.99 -34.44 -0.28 -14.19 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.60 -12.36 2.75 -181.00 -0.50 -12.86 16 13 C 0.08 1.30 9.25 59.85 0.55 1.85 16 14 C 0.70 14.15 8.02 -86.93 -0.70 13.46 16 15 O -0.58 -13.84 13.36 5.28 0.07 -13.77 16 16 N -0.69 -10.75 5.22 -14.24 -0.07 -10.83 16 17 C 0.21 3.19 6.27 -83.71 -0.53 2.66 16 18 C -0.13 -1.99 8.65 -39.36 -0.34 -2.33 16 19 C -0.07 -0.86 10.03 -39.64 -0.40 -1.26 16 20 C -0.17 -1.91 9.45 -39.37 -0.37 -2.29 16 21 C 0.15 1.92 6.62 -83.62 -0.55 1.37 16 22 N -0.39 -4.63 2.97 -60.95 -0.18 -4.82 16 23 C -0.01 -0.15 10.74 -16.64 -0.18 -0.33 16 24 C -0.20 -2.02 10.86 -39.76 -0.43 -2.45 16 25 C -0.20 -1.98 10.86 -39.76 -0.43 -2.41 16 26 C -0.01 -0.14 10.74 -16.64 -0.18 -0.32 16 27 C -0.18 -2.29 9.36 -39.22 -0.37 -2.66 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.56 6.29 -51.93 -0.33 0.23 16 34 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 35 H 0.40 4.95 6.51 -40.82 -0.27 4.68 16 36 H 0.14 2.48 6.42 -52.49 -0.34 2.14 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.14 6.70 -52.49 -0.35 0.79 16 39 H 0.16 1.45 7.01 -52.49 -0.37 1.08 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 42 H 0.16 1.30 7.00 -52.49 -0.37 0.93 16 43 H 0.13 1.41 6.70 -52.48 -0.35 1.06 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -31.68 352.60 -9.34 -41.02 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.44 Total: 7.98 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -4.14 Total: -3.75 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.13 Total: -52.50 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.07 Total: -13.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.68 -9.34 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086285595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.631 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds