Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47460 * 2 1 4 4 C 1.50697 * 109.47258 * 120.00339 * 2 1 3 5 5 H 1.08001 * 120.00643 * 119.99610 * 4 2 1 6 6 C 1.37881 * 119.99672 * 299.99811 * 4 2 1 7 7 N 1.31514 * 120.00111 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99891 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46982 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47354 * 119.99655 * 8 6 4 11 11 H 1.48502 * 109.47126 * 240.00295 * 8 6 4 12 12 N 1.46500 * 109.46896 * 240.00104 * 2 1 3 13 13 C 1.46506 * 120.00202 * 299.99940 * 12 2 1 14 14 C 1.34771 * 120.00192 * 120.00047 * 12 2 1 15 15 O 1.21595 * 119.99883 * 359.97438 * 14 12 2 16 16 N 1.34772 * 120.00184 * 179.97438 * 14 12 2 17 17 C 1.39955 * 120.00277 * 174.70577 * 16 14 12 18 18 C 1.38935 * 120.03308 * 326.52945 * 17 16 14 19 19 C 1.38133 * 120.05695 * 179.74259 * 18 17 16 20 20 C 1.38187 * 120.13805 * 0.55313 * 19 18 17 21 21 C 1.38851 * 120.07083 * 359.69923 * 20 19 18 22 22 N 1.40205 * 120.03356 * 180.02562 * 21 20 19 23 23 C 1.36569 * 125.67409 * 179.66989 * 22 21 20 24 24 C 1.34848 * 108.20115 * 179.88915 * 23 22 21 25 25 C 1.40942 * 107.46712 * 0.36995 * 24 23 22 26 26 C 1.34849 * 107.46842 * 359.76568 * 25 24 23 27 27 C 1.38722 * 120.04084 * 146.79968 * 17 16 14 28 28 H 1.08998 * 109.47305 * 59.99794 * 1 2 3 29 29 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46815 * 300.00046 * 1 2 3 31 31 H 0.97003 * 119.99584 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46631 * 89.99994 * 13 12 2 33 33 H 1.08999 * 109.47041 * 210.00308 * 13 12 2 34 34 H 1.09002 * 109.46860 * 330.00511 * 13 12 2 35 35 H 0.96999 * 120.00522 * 354.70826 * 16 14 12 36 36 H 1.08000 * 119.96954 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.93323 * 180.24821 * 19 18 17 38 38 H 1.07994 * 119.96697 * 179.72034 * 20 19 18 39 39 H 1.07999 * 125.89390 * 0.02562 * 23 22 21 40 40 H 1.07995 * 126.26443 * 180.13950 * 24 23 22 41 41 H 1.08005 * 126.26484 * 179.77109 * 25 24 23 42 42 H 1.07997 * 125.89700 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.06929 * 359.95622 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1474 -2.2864 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 3.0865 1.1286 -1.8912 16 7 3.2427 -0.6711 -3.1835 17 6 3.9536 0.0369 -4.1593 18 6 3.6464 1.3675 -4.4149 19 6 4.3512 2.0684 -5.3742 20 6 5.3558 1.4456 -6.0901 21 6 5.6639 0.1145 -5.8428 22 7 6.6837 -0.5164 -6.5693 23 6 7.0851 -1.8129 -6.4170 24 6 8.0839 -2.0500 -7.2914 25 6 8.3145 -0.8562 -8.0042 26 6 7.4446 0.0652 -7.5429 27 6 4.9619 -0.5906 -4.8761 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7088 1.1612 3.4845 32 1 0.7375 -2.1443 -1.9994 33 1 2.4628 -2.5819 -1.9864 34 1 1.5294 -2.5969 -0.4709 35 1 3.0737 -1.6192 -3.2992 36 1 2.8583 1.8554 -3.8606 37 1 4.1134 3.1038 -5.5685 38 1 5.9021 1.9949 -6.8426 39 1 6.6722 -2.5256 -5.7185 40 1 8.6130 -2.9828 -7.4191 41 1 9.0527 -0.7068 -8.7783 42 1 7.3641 1.0866 -7.8840 43 1 5.2002 -1.6260 -4.6818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086285595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = 51.820326 kcal Electronic energy + Delta-G solvation = -25121.507830 eV Core-core repulsion = 21553.750916 eV Total energy + Delta-G solvation = -3567.756914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56641 -41.65089 -39.65866 -37.33344 -36.02818 -34.77449 -33.80985 -31.82164 -30.69502 -29.73011 -29.27869 -27.66131 -27.30438 -24.58993 -24.10861 -22.94785 -21.38268 -20.94297 -20.51042 -19.63670 -19.02845 -18.40026 -17.47782 -17.20380 -16.74232 -16.58753 -16.03725 -15.89958 -15.74439 -15.03524 -14.98996 -14.66366 -14.47693 -14.32802 -14.05312 -13.70269 -13.56278 -13.25927 -13.16525 -13.08958 -12.93254 -12.75966 -12.73315 -12.61279 -12.42422 -12.21331 -12.11271 -11.62008 -11.20222 -11.10801 -10.64228 -10.52942 -9.61835 -9.25873 -9.17772 -8.84516 -8.15455 -6.31531 -0.05145 0.20460 1.40581 1.42123 1.48679 1.52653 1.59320 1.95706 2.08674 2.12116 2.41226 2.80830 3.00240 3.13135 3.72119 3.89906 4.04970 4.11660 4.24851 4.27230 4.33777 4.40413 4.61259 4.65209 4.66154 4.71829 4.81092 4.89354 4.95956 5.01399 5.05194 5.19708 5.27888 5.33050 5.39882 5.41982 5.48551 5.51626 5.64877 5.85018 5.94649 6.00615 6.13992 6.20471 6.27557 6.48889 6.75925 7.00911 7.35057 7.56275 8.89137 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.002766 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.178186 B =10121.978808 C =10631.301543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.278 3.722 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.610 5.610 13 C 0.078 3.922 14 C 0.693 3.307 15 O -0.623 6.623 16 N -0.676 5.676 17 C 0.190 3.810 18 C -0.157 4.157 19 C -0.067 4.067 20 C -0.158 4.158 21 C 0.150 3.850 22 N -0.402 5.402 23 C -0.034 4.034 24 C -0.202 4.202 25 C -0.203 4.203 26 C -0.026 4.026 27 C -0.173 4.173 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.265 0.735 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.114 0.886 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -6.293 -20.536 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.175 3.825 3 H 0.030 0.970 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.343 5.343 13 C -0.064 4.064 14 C 0.395 3.605 15 O -0.503 6.503 16 N -0.326 5.326 17 C 0.093 3.907 18 C -0.178 4.178 19 C -0.086 4.086 20 C -0.178 4.178 21 C 0.057 3.943 22 N -0.074 5.074 23 C -0.160 4.160 24 C -0.226 4.226 25 C -0.227 4.227 26 C -0.152 4.152 27 C -0.196 4.196 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.260 0.740 36 H 0.132 0.868 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.195 0.805 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.203 0.797 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.267 -5.298 -20.019 22.297 hybrid contribution -0.039 -0.564 1.247 1.369 sum 8.228 -5.862 -18.772 21.318 Atomic orbital electron populations 1.21881 0.96946 1.00209 0.99986 1.18496 0.91496 0.92038 0.80435 0.97011 1.21606 1.31835 1.13107 0.91069 0.92037 1.25712 0.95090 0.95648 1.01960 1.70025 1.37279 1.23852 1.24396 0.85412 0.78196 0.78463 0.78954 1.18928 1.21303 1.19957 1.47490 1.50529 1.13434 1.22868 1.21833 1.00888 0.80543 1.03160 1.16108 0.79482 0.84674 0.80285 1.90862 1.63823 1.17646 1.77982 1.42646 1.57575 1.13433 1.18974 1.17378 0.91813 0.92365 0.89110 1.21306 1.02573 0.94410 0.99496 1.21103 0.93639 1.00715 0.93127 1.21008 1.00849 0.92543 1.03446 1.17655 0.90041 0.92905 0.93682 1.41761 1.26198 1.10528 1.28919 1.22327 1.01993 0.86080 1.05573 1.21327 1.00987 1.00273 1.00001 1.21338 1.03129 0.93584 1.04665 1.22401 0.96724 1.01106 0.94986 1.20442 0.97014 1.02066 1.00059 0.96132 0.93356 0.91256 0.92615 0.91397 0.89872 0.90525 0.73985 0.86795 0.82591 0.82617 0.80549 0.82666 0.82412 0.79667 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.97 71.98 0.65 -5.59 16 2 C 0.28 14.27 2.64 44.24 0.12 14.38 16 3 H 0.01 0.74 6.90 -2.39 -0.02 0.72 16 4 C -0.54 -28.79 7.99 25.60 0.20 -28.58 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.17 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.10 16 8 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 12 N -0.61 -25.32 2.75 -844.83 -2.33 -27.64 16 13 C 0.08 2.32 9.25 127.77 1.18 3.50 16 14 C 0.69 28.87 8.02 179.06 1.44 30.31 16 15 O -0.62 -31.68 13.36 -4.01 -0.05 -31.73 16 16 N -0.68 -20.68 5.22 -317.23 -1.66 -22.33 16 17 C 0.19 5.61 6.27 38.13 0.24 5.85 16 18 C -0.16 -4.85 8.65 22.41 0.19 -4.66 16 19 C -0.07 -1.57 10.03 22.23 0.22 -1.35 16 20 C -0.16 -3.28 9.45 22.40 0.21 -3.07 16 21 C 0.15 3.45 6.62 38.06 0.25 3.70 16 22 N -0.40 -8.53 2.97 -346.74 -1.03 -9.56 16 23 C -0.03 -0.66 10.74 83.18 0.89 0.23 16 24 C -0.20 -3.67 10.86 22.15 0.24 -3.43 16 25 C -0.20 -3.56 10.86 22.15 0.24 -3.32 16 26 C -0.03 -0.47 10.74 83.18 0.89 0.42 16 27 C -0.17 -4.19 9.36 22.50 0.21 -3.97 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 30 H 0.07 3.66 6.07 -2.38 -0.01 3.65 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.81 6.29 -2.39 -0.02 1.80 16 34 H 0.08 2.46 7.02 -2.39 -0.02 2.44 16 35 H 0.42 9.56 6.51 -92.71 -0.60 8.96 16 36 H 0.11 4.22 6.42 -2.91 -0.02 4.20 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.16 2.26 6.70 -2.91 -0.02 2.24 16 39 H 0.18 2.73 7.01 -2.91 -0.02 2.71 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.19 2.31 7.00 -2.91 -0.02 2.29 16 43 H 0.15 2.89 6.70 -2.91 -0.02 2.87 16 Total: -1.00 -71.74 352.60 5.27 -66.48 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.44 Total: 26.51 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 7.63 Total: 5.70 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.77 Total: -111.64 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.74 5.27 -66.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086285595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.295 kcal (2) G-P(sol) polarization free energy of solvation -71.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds