Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 116.99938 * 2 1 4 4 C 1.38924 * 119.68686 * 180.29683 * 3 2 1 5 5 C 1.38375 * 119.11499 * 180.24812 * 4 3 2 6 6 C 1.50702 * 120.75874 * 179.73598 * 5 4 3 7 7 N 1.46903 * 109.46645 * 275.57547 * 6 5 4 8 8 C 1.46903 * 110.99836 * 287.88083 * 7 6 5 9 9 C 1.50698 * 109.47150 * 299.23431 * 8 7 6 10 10 H 1.07999 * 120.00151 * 4.83191 * 9 8 7 11 11 C 1.37878 * 119.99502 * 184.82829 * 9 8 7 12 12 N 1.31517 * 120.00596 * 0.02562 * 11 9 8 13 13 Si 1.86811 * 119.99803 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46911 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46759 * 119.99971 * 13 11 9 16 16 H 1.48496 * 109.46868 * 240.00327 * 13 11 9 17 17 C 1.46900 * 110.99398 * 163.93168 * 7 6 5 18 18 C 1.50704 * 109.46433 * 189.99960 * 17 7 6 19 19 C 1.38226 * 119.62131 * 95.00210 * 18 17 7 20 20 C 1.38622 * 119.16572 * 179.97438 * 19 18 17 21 21 C 1.38679 * 118.41998 * 359.97438 * 20 19 18 22 22 C 1.38182 * 119.16233 * 0.02562 * 21 20 19 23 23 N 1.31855 * 119.61795 * 275.01667 * 18 17 7 24 24 C 1.38833 * 118.48083 * 359.45838 * 5 4 3 25 25 C 1.38041 * 119.28982 * 0.27690 * 24 5 4 26 26 N 1.31966 * 120.83828 * 359.97438 * 25 24 5 27 27 H 1.08993 * 109.46880 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46966 * 300.00629 * 1 2 3 29 29 H 1.09001 * 109.46862 * 60.00294 * 1 2 3 30 30 H 1.08004 * 120.44370 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.47224 * 155.57695 * 6 5 4 32 32 H 1.08997 * 109.46938 * 35.57340 * 6 5 4 33 33 H 1.08998 * 109.47047 * 59.23912 * 8 7 6 34 34 H 1.09004 * 109.47038 * 179.23604 * 8 7 6 35 35 H 0.96994 * 120.00443 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47446 * 69.99975 * 17 7 6 37 37 H 1.08997 * 109.47208 * 309.99341 * 17 7 6 38 38 H 1.08001 * 120.41835 * 0.02562 * 19 18 17 39 39 H 1.08006 * 120.79051 * 179.72344 * 20 19 18 40 40 H 1.07996 * 120.41826 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.61454 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.35211 * 180.24982 * 24 5 4 43 43 H 1.08003 * 119.57969 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0063 5 6 4.0485 2.5132 -0.0009 6 6 5.5513 2.6269 -0.0015 7 7 6.0505 2.5233 1.3762 8 6 5.7367 3.7367 2.1425 9 6 6.3974 4.9256 1.4937 10 1 6.9258 4.8065 0.5593 11 6 6.3274 6.1653 2.0929 12 7 5.6844 6.3104 3.2310 13 14 7.1458 7.6393 1.2882 14 1 7.7984 7.2140 0.0240 15 1 6.1221 8.6737 0.9928 16 1 8.1669 8.2017 2.2081 17 6 7.4934 2.2481 1.3938 18 6 7.9224 1.9065 2.7976 19 6 7.9973 0.5821 3.1859 20 6 8.3935 0.2786 4.4792 21 6 8.7015 1.3235 5.3374 22 6 8.6034 2.6232 4.8784 23 7 8.2217 2.8746 3.6412 24 6 3.2504 3.6491 -0.0010 25 6 1.8771 3.5096 -0.0006 26 7 1.3186 2.3140 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.0230 0.3696 -0.0107 31 1 5.8426 3.5893 -0.4221 32 1 5.9762 1.8237 -0.6033 33 1 4.6571 3.8860 2.1606 34 1 6.1055 3.6279 3.1625 35 1 5.6348 7.1826 3.6523 36 1 8.0358 3.1298 1.0525 37 1 7.7113 1.4090 0.7331 38 1 7.7511 -0.2065 2.4902 39 1 8.4569 -0.7470 4.8118 40 1 9.0133 1.1240 6.3520 41 1 8.8411 3.4424 5.5406 42 1 3.6993 4.6315 -0.0010 43 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089429346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = 49.445481 kcal Electronic energy + Delta-G solvation = -25714.541480 eV Core-core repulsion = 22146.681585 eV Total energy + Delta-G solvation = -3567.859895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25825 -39.70951 -37.86802 -36.55307 -32.85307 -32.45459 -31.88535 -30.84549 -30.26054 -27.48339 -27.02492 -26.36493 -24.27832 -23.06925 -22.98383 -22.28953 -21.15398 -19.82915 -17.58717 -16.78396 -16.42742 -16.15323 -15.77720 -15.68434 -15.41288 -15.06789 -14.91174 -14.66883 -14.14449 -13.99819 -13.58990 -13.21664 -13.07661 -12.80690 -12.74169 -12.27993 -12.14121 -11.82951 -11.54975 -11.32882 -11.04764 -11.00952 -10.94344 -10.81494 -10.72427 -10.30155 -10.01225 -9.64615 -9.36317 -9.27217 -9.13537 -8.71356 -8.54794 -8.32356 -8.08640 -7.25044 -5.93707 -3.99666 1.52442 1.61652 1.72801 1.78470 3.30513 3.34595 3.39341 3.40779 4.12537 4.31865 4.47197 4.67675 4.84126 5.08426 5.16733 5.25119 5.31030 5.38525 5.39667 5.42149 5.43329 5.52149 5.56829 5.57612 5.68610 5.76021 5.90374 6.02691 6.05470 6.09315 6.14756 6.38229 6.42993 6.46512 6.55161 6.71029 6.84407 6.95744 7.14640 7.25814 7.55339 7.63072 7.94891 8.01760 8.22295 8.22694 8.34068 8.66329 9.06427 9.64816 11.12802 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.005136 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.796906 B = 5450.863507 C = 7652.341763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.314 6.314 3 C 0.303 3.697 4 C -0.173 4.173 5 C 0.020 3.980 6 C 0.091 3.909 7 N -0.531 5.531 8 C 0.183 3.817 9 C -0.534 4.534 10 H 0.053 0.947 11 C 0.073 3.927 12 N -0.886 5.886 13 Si 0.881 3.119 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.105 3.895 18 C 0.155 3.845 19 C -0.165 4.165 20 C -0.086 4.086 21 C -0.189 4.189 22 C 0.099 3.901 23 N -0.442 5.442 24 C -0.179 4.179 25 C 0.126 3.874 26 N -0.549 5.549 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.049 0.951 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 -11.746 -3.197 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.222 6.222 3 C 0.125 3.875 4 C -0.194 4.194 5 C 0.011 3.989 6 C -0.037 4.037 7 N -0.255 5.255 8 C 0.058 3.942 9 C -0.573 4.573 10 H 0.072 0.928 11 C -0.130 4.130 12 N -0.525 5.525 13 Si 0.710 3.290 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.211 1.211 17 C -0.023 4.023 18 C 0.017 3.983 19 C -0.185 4.185 20 C -0.112 4.112 21 C -0.209 4.209 22 C -0.058 4.058 23 N -0.151 5.151 24 C -0.200 4.200 25 C -0.028 4.028 26 N -0.273 5.273 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.397 -11.482 -3.125 12.139 hybrid contribution 1.462 1.006 -0.130 1.779 sum -0.935 -10.476 -3.255 11.010 Atomic orbital electron populations 1.22739 0.78065 1.02204 1.02188 1.86200 1.22253 1.25154 1.88574 1.19742 0.89336 0.84431 0.94029 1.20851 0.91354 0.99169 1.08064 1.20046 0.96536 0.91405 0.90883 1.20964 0.89051 1.01673 0.91999 1.62619 1.11229 1.40885 1.10787 1.19904 0.96354 0.83402 0.94554 1.21516 1.34440 0.93932 1.07391 0.92849 1.24814 0.95047 0.98497 0.94599 1.69952 1.42163 1.23465 1.16935 0.86725 0.79408 0.83432 0.79472 1.20017 1.21267 1.21132 1.20835 0.90748 1.00475 0.90255 1.21196 0.92736 0.88443 0.95958 1.21912 1.01898 0.97736 0.96976 1.21433 0.96924 0.99165 0.93676 1.22051 1.03796 0.94433 1.00613 1.22799 0.94812 0.95402 0.92827 1.67778 1.08046 1.36363 1.02907 1.22131 0.94246 1.00582 1.03010 1.22272 0.93016 0.93189 0.94351 1.67198 1.41105 0.98911 1.20108 0.89233 0.92592 0.92705 0.84715 0.91450 0.91488 0.95580 0.93267 0.93172 0.91597 0.91403 0.85399 0.85693 0.85696 0.83436 0.83706 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 101.05 1.05 1.56 16 2 O -0.31 -4.83 10.48 -18.73 -0.20 -5.02 16 3 C 0.30 5.16 7.49 -17.12 -0.13 5.03 16 4 C -0.17 -2.91 9.76 -39.28 -0.38 -3.29 16 5 C 0.02 0.35 4.92 -104.35 -0.51 -0.17 16 6 C 0.09 1.62 4.99 -4.97 -0.02 1.59 16 7 N -0.53 -10.72 4.65 -238.96 -1.11 -11.83 16 8 C 0.18 4.53 4.67 -4.98 -0.02 4.50 16 9 C -0.53 -13.83 7.34 -34.44 -0.25 -14.08 16 10 H 0.05 1.37 5.95 -52.49 -0.31 1.06 16 11 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 12 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.11 1.95 5.09 -4.97 -0.03 1.92 16 18 C 0.15 2.90 5.70 -82.58 -0.47 2.43 16 19 C -0.16 -2.53 9.72 -39.44 -0.38 -2.92 16 20 C -0.09 -1.17 10.18 -39.28 -0.40 -1.57 16 21 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 22 C 0.10 1.72 11.18 -17.55 -0.20 1.52 16 23 N -0.44 -9.16 8.77 -9.47 -0.08 -9.25 16 24 C -0.18 -3.20 8.68 -39.43 -0.34 -3.54 16 25 C 0.13 2.08 11.17 -17.57 -0.20 1.89 16 26 N -0.55 -9.38 9.22 -13.33 -0.12 -9.50 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 31 H 0.07 1.30 6.06 -51.93 -0.31 0.98 16 32 H 0.07 1.01 7.80 -51.93 -0.40 0.60 16 33 H 0.03 0.71 6.64 -51.93 -0.34 0.36 16 34 H 0.05 1.37 6.16 -51.93 -0.32 1.05 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.07 1.37 6.61 -51.93 -0.34 1.02 16 37 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 43 H 0.15 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -31.48 360.13 -8.96 -40.44 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.80 Total: 4.84 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.79 Total: -6.31 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.58 Total: -55.45 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.48 -8.96 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089429346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.888 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds