Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 116.99938 * 2 1 4 4 C 1.38924 * 119.68686 * 180.29683 * 3 2 1 5 5 C 1.38375 * 119.11499 * 180.24812 * 4 3 2 6 6 C 1.50702 * 120.75874 * 179.73598 * 5 4 3 7 7 N 1.46903 * 109.46645 * 275.57547 * 6 5 4 8 8 C 1.46903 * 110.99836 * 287.88083 * 7 6 5 9 9 C 1.50698 * 109.47150 * 299.23431 * 8 7 6 10 10 H 1.07999 * 120.00151 * 4.83191 * 9 8 7 11 11 C 1.37878 * 119.99502 * 184.82829 * 9 8 7 12 12 N 1.31517 * 120.00596 * 0.02562 * 11 9 8 13 13 Si 1.86811 * 119.99803 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46911 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46759 * 119.99971 * 13 11 9 16 16 H 1.48496 * 109.46868 * 240.00327 * 13 11 9 17 17 C 1.46900 * 110.99398 * 163.93168 * 7 6 5 18 18 C 1.50704 * 109.46433 * 189.99960 * 17 7 6 19 19 C 1.38226 * 119.62131 * 95.00210 * 18 17 7 20 20 C 1.38622 * 119.16572 * 179.97438 * 19 18 17 21 21 C 1.38679 * 118.41998 * 359.97438 * 20 19 18 22 22 C 1.38182 * 119.16233 * 0.02562 * 21 20 19 23 23 N 1.31855 * 119.61795 * 275.01667 * 18 17 7 24 24 C 1.38833 * 118.48083 * 359.45838 * 5 4 3 25 25 C 1.38041 * 119.28982 * 0.27690 * 24 5 4 26 26 N 1.31966 * 120.83828 * 359.97438 * 25 24 5 27 27 H 1.08993 * 109.46880 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46966 * 300.00629 * 1 2 3 29 29 H 1.09001 * 109.46862 * 60.00294 * 1 2 3 30 30 H 1.08004 * 120.44370 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.47224 * 155.57695 * 6 5 4 32 32 H 1.08997 * 109.46938 * 35.57340 * 6 5 4 33 33 H 1.08998 * 109.47047 * 59.23912 * 8 7 6 34 34 H 1.09004 * 109.47038 * 179.23604 * 8 7 6 35 35 H 0.96994 * 120.00443 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47446 * 69.99975 * 17 7 6 37 37 H 1.08997 * 109.47208 * 309.99341 * 17 7 6 38 38 H 1.08001 * 120.41835 * 0.02562 * 19 18 17 39 39 H 1.08006 * 120.79051 * 179.72344 * 20 19 18 40 40 H 1.07996 * 120.41826 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.61454 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.35211 * 180.24982 * 24 5 4 43 43 H 1.08003 * 119.57969 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0063 5 6 4.0485 2.5132 -0.0009 6 6 5.5513 2.6269 -0.0015 7 7 6.0505 2.5233 1.3762 8 6 5.7367 3.7367 2.1425 9 6 6.3974 4.9256 1.4937 10 1 6.9258 4.8065 0.5593 11 6 6.3274 6.1653 2.0929 12 7 5.6844 6.3104 3.2310 13 14 7.1458 7.6393 1.2882 14 1 7.7984 7.2140 0.0240 15 1 6.1221 8.6737 0.9928 16 1 8.1669 8.2017 2.2081 17 6 7.4934 2.2481 1.3938 18 6 7.9224 1.9065 2.7976 19 6 7.9973 0.5821 3.1859 20 6 8.3935 0.2786 4.4792 21 6 8.7015 1.3235 5.3374 22 6 8.6034 2.6232 4.8784 23 7 8.2217 2.8746 3.6412 24 6 3.2504 3.6491 -0.0010 25 6 1.8771 3.5096 -0.0006 26 7 1.3186 2.3140 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.0230 0.3696 -0.0107 31 1 5.8426 3.5893 -0.4221 32 1 5.9762 1.8237 -0.6033 33 1 4.6571 3.8860 2.1606 34 1 6.1055 3.6279 3.1625 35 1 5.6348 7.1826 3.6523 36 1 8.0358 3.1298 1.0525 37 1 7.7113 1.4090 0.7331 38 1 7.7511 -0.2065 2.4902 39 1 8.4569 -0.7470 4.8118 40 1 9.0133 1.1240 6.3520 41 1 8.8411 3.4424 5.5406 42 1 3.6993 4.6315 -0.0010 43 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089429346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = 27.680684 kcal Electronic energy + Delta-G solvation = -25715.485273 eV Core-core repulsion = 22146.681585 eV Total energy + Delta-G solvation = -3568.803687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55496 -40.97332 -39.16207 -38.03713 -34.59445 -34.06081 -33.11978 -32.22082 -31.54214 -29.19040 -28.37500 -27.58952 -26.03436 -24.43467 -24.21280 -23.75614 -22.43029 -21.43035 -19.00937 -18.32064 -17.85486 -17.50057 -17.04488 -16.91444 -16.83535 -16.60311 -16.39450 -16.17234 -15.63653 -15.21595 -15.05002 -14.66773 -14.38254 -14.12120 -14.09102 -13.86074 -13.37304 -13.15442 -13.04245 -12.79540 -12.72588 -12.57740 -12.36235 -12.26843 -12.12753 -12.08699 -11.90560 -11.59281 -10.63786 -10.60392 -10.53278 -10.44668 -10.00172 -9.78976 -9.39575 -8.96917 -8.02111 -6.14973 0.24174 0.31589 0.41870 0.60268 1.37156 1.40237 1.48802 2.19530 2.44735 2.78561 3.02857 3.27046 3.43228 3.55698 3.75023 3.97299 4.00435 4.13806 4.14608 4.25527 4.36176 4.37572 4.42629 4.47523 4.51491 4.61933 4.65790 4.75691 4.80862 4.82935 4.95476 4.99792 5.06894 5.08965 5.35955 5.40411 5.41507 5.50689 5.56371 5.58641 5.89998 5.99727 6.13773 6.31002 6.32065 6.51586 6.90591 7.01305 7.40236 7.52844 9.02440 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.005136 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.796906 B = 5450.863507 C = 7652.341763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.297 3.703 4 C -0.174 4.174 5 C 0.009 3.991 6 C 0.094 3.906 7 N -0.528 5.528 8 C 0.207 3.793 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.022 3.978 12 N -0.925 5.925 13 Si 0.941 3.059 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.289 1.289 17 C 0.108 3.892 18 C 0.122 3.878 19 C -0.161 4.161 20 C -0.080 4.080 21 C -0.175 4.175 22 C 0.069 3.931 23 N -0.498 5.498 24 C -0.197 4.197 25 C 0.127 3.873 26 N -0.554 5.554 27 H 0.125 0.875 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.154 0.846 31 H 0.048 0.952 32 H 0.103 0.897 33 H -0.004 1.004 34 H 0.017 0.983 35 H 0.257 0.743 36 H 0.035 0.965 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.126 0.874 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -14.471 -3.706 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C 0.119 3.881 4 C -0.195 4.195 5 C 0.001 3.999 6 C -0.034 4.034 7 N -0.251 5.251 8 C 0.080 3.920 9 C -0.562 4.562 10 H 0.072 0.928 11 C -0.177 4.177 12 N -0.566 5.566 13 Si 0.768 3.232 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.216 1.216 17 C -0.020 4.020 18 C -0.016 4.016 19 C -0.181 4.181 20 C -0.106 4.106 21 C -0.195 4.195 22 C -0.088 4.088 23 N -0.208 5.208 24 C -0.218 4.218 25 C -0.027 4.027 26 N -0.279 5.279 27 H 0.143 0.857 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.172 0.828 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.014 0.986 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.144 0.856 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.190 -14.227 -3.657 14.852 hybrid contribution 1.363 1.726 0.059 2.200 sum -0.827 -12.502 -3.598 13.035 Atomic orbital electron populations 1.23020 0.76128 1.04522 1.01989 1.86197 1.24166 1.24137 1.88203 1.19977 0.89729 0.84969 0.93449 1.20989 0.91645 0.99262 1.07593 1.20092 0.96463 0.91901 0.91421 1.21007 0.89450 1.02030 0.90890 1.62496 1.12782 1.38059 1.11807 1.19378 0.93916 0.85034 0.93634 1.21718 1.33160 0.94365 1.06919 0.92822 1.25530 0.95845 1.01214 0.95127 1.70082 1.44064 1.23890 1.18527 0.85780 0.78368 0.80406 0.78689 1.19082 1.20736 1.21595 1.20919 0.88822 1.00621 0.91681 1.21309 0.94680 0.89807 0.95811 1.22201 1.00727 0.96754 0.98400 1.21952 0.94970 1.01029 0.92657 1.22400 1.01783 0.93058 1.02268 1.23016 0.96125 0.97375 0.92275 1.67609 1.09939 1.38551 1.04704 1.22088 0.95140 1.00014 1.04543 1.22594 0.92768 0.93983 0.93380 1.67274 1.41195 0.99049 1.20401 0.85718 0.93185 0.92482 0.82847 0.93410 0.87892 0.98611 0.96509 0.93396 0.94716 0.87413 0.82600 0.81366 0.82115 0.83433 0.85564 0.80616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.38 113.37 1.18 1.99 16 2 O -0.32 -9.18 10.48 -89.93 -0.94 -10.12 16 3 C 0.30 9.75 7.49 84.80 0.63 10.38 16 4 C -0.17 -5.62 9.76 22.47 0.22 -5.40 16 5 C 0.01 0.33 4.92 -19.69 -0.10 0.24 16 6 C 0.09 3.30 4.99 85.56 0.43 3.73 16 7 N -0.53 -21.45 4.65 -909.93 -4.23 -25.68 16 8 C 0.21 10.67 4.67 85.56 0.40 11.07 16 9 C -0.52 -28.09 7.34 25.60 0.19 -27.91 16 10 H 0.05 2.83 5.95 -2.91 -0.02 2.82 16 11 C 0.02 1.21 5.46 84.65 0.46 1.67 16 12 N -0.92 -55.69 13.29 21.45 0.28 -55.41 16 13 Si 0.94 44.57 29.54 68.60 2.03 46.59 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 17 C 0.11 3.96 5.09 85.56 0.44 4.40 16 18 C 0.12 4.53 5.70 42.55 0.24 4.77 16 19 C -0.16 -4.53 9.72 22.36 0.22 -4.32 16 20 C -0.08 -1.91 10.18 22.47 0.23 -1.68 16 21 C -0.18 -4.57 10.11 22.36 0.23 -4.34 16 22 C 0.07 2.43 11.18 84.67 0.95 3.38 16 23 N -0.50 -21.32 8.77 -183.88 -1.61 -22.93 16 24 C -0.20 -7.22 8.68 22.37 0.19 -7.03 16 25 C 0.13 4.20 11.17 84.63 0.95 5.14 16 26 N -0.55 -18.52 9.22 -308.95 -2.85 -21.37 16 27 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.05 1.87 6.06 -2.39 -0.01 1.86 16 32 H 0.10 2.86 7.80 -2.39 -0.02 2.84 16 33 H 0.00 -0.24 6.64 -2.39 -0.02 -0.25 16 34 H 0.02 0.99 6.16 -2.38 -0.01 0.97 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.03 1.48 6.61 -2.39 -0.02 1.46 16 37 H 0.11 3.01 7.76 -2.39 -0.02 2.99 16 38 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 42 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 43 H 0.18 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -71.82 360.13 0.54 -71.28 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.01 Total: 21.54 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.85 Total: -3.91 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -8.40 Total: -125.38 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.94 Total: -10.12 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.82 0.54 -71.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089429346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.956 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds