Wall clock time and date at job start Fri Apr 10 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 C 1.50695 * 109.47413 * 120.00716 * 2 1 3 5 5 C 1.38400 * 119.92607 * 299.99590 * 4 2 1 6 6 C 1.38353 * 120.31632 * 179.97438 * 5 4 2 7 7 C 1.37955 * 120.14960 * 0.02562 * 6 5 4 8 8 C 1.39649 * 119.84437 * 359.97438 * 7 6 5 9 9 C 1.47661 * 120.15039 * 179.97438 * 8 7 6 10 10 C 1.36600 * 125.65007 * 359.97438 * 9 8 7 11 11 C 1.39803 * 107.10570 * 179.76450 * 10 9 8 12 12 C 1.37922 * 106.76779 * 0.41777 * 11 10 9 13 13 C 1.46353 * 125.96679 * 179.84979 * 12 11 10 14 14 O 1.21782 * 120.00019 * 3.49484 * 13 12 11 15 15 N 1.34775 * 120.00497 * 183.50082 * 13 12 11 16 16 C 1.46498 * 119.99789 * 4.87533 * 15 13 12 17 17 C 1.36797 * 120.00341 * 185.15214 * 15 13 12 18 18 H 1.08004 * 119.99311 * 328.81714 * 17 15 13 19 19 C 1.39038 * 120.00403 * 148.82007 * 17 15 13 20 20 N 1.31376 * 119.99921 * 344.06511 * 19 17 15 21 21 Si 1.86796 * 120.00214 * 164.06098 * 19 17 15 22 22 H 1.48505 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47178 * 120.00398 * 21 19 17 24 24 H 1.48503 * 109.47518 * 240.00093 * 21 19 17 25 25 O 1.34387 * 125.65336 * 180.02562 * 9 8 7 26 26 C 1.37919 * 119.92352 * 120.25651 * 4 2 1 27 27 H 1.08998 * 109.47071 * 299.99335 * 1 2 3 28 28 H 1.09000 * 109.47481 * 59.99452 * 1 2 3 29 29 H 1.09004 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46574 * 240.00557 * 2 1 3 31 31 H 1.09001 * 109.46730 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47869 * 300.00403 * 3 2 1 33 33 H 1.09010 * 109.46756 * 60.00809 * 3 2 1 34 34 H 1.08005 * 119.84161 * 359.97438 * 5 4 2 35 35 H 1.07994 * 119.92625 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.07391 * 180.02562 * 7 6 5 37 37 H 1.07993 * 126.44880 * 0.05172 * 10 9 8 38 38 H 1.08003 * 126.61077 * 180.25925 * 11 10 9 39 39 H 1.08996 * 109.47352 * 175.33629 * 16 15 13 40 40 H 1.09009 * 109.47203 * 295.32999 * 16 15 13 41 41 H 1.09003 * 109.47450 * 55.33155 * 16 15 13 42 42 H 0.96992 * 120.00120 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.08053 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.6972 -0.2365 2.4866 6 6 2.1535 -0.8828 3.6216 7 6 2.9473 -2.0054 3.5078 8 6 3.2894 -2.4893 2.2433 9 6 4.1391 -3.6900 2.1136 10 6 4.6541 -4.4166 3.1494 11 6 5.3895 -5.4658 2.5901 12 6 5.2995 -5.3290 1.2207 13 6 5.9200 -6.2058 0.2267 14 8 6.5343 -7.1943 0.5855 15 7 5.8118 -5.9195 -1.0858 16 6 5.1661 -4.6759 -1.5134 17 6 6.2998 -6.7926 -2.0190 18 1 7.1602 -7.4036 -1.7889 19 6 5.6884 -6.8935 -3.2636 20 7 4.4827 -6.4040 -3.4448 21 14 6.5811 -7.7248 -4.6783 22 1 7.9148 -8.1881 -4.2180 23 1 5.7881 -8.8891 -5.1482 24 1 6.7500 -6.7586 -5.7933 25 8 4.5346 -4.2485 0.9571 26 6 2.8296 -1.8286 1.1018 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8902 34 1 1.0764 0.6422 2.5815 35 1 1.8885 -0.5072 4.5988 36 1 3.3025 -2.5092 4.3946 37 1 4.5151 -4.2204 4.2023 38 1 5.9267 -6.2337 3.1270 39 1 5.2453 -4.5789 -2.5961 40 1 4.1146 -4.6952 -1.2264 41 1 5.6576 -3.8283 -1.0357 42 1 4.0563 -6.4740 -4.3131 43 1 3.0935 -2.1953 0.1209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095989285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:34 Heat of formation + Delta-G solvation = -2.531895 kcal Electronic energy + Delta-G solvation = -25368.623801 eV Core-core repulsion = 21766.217246 eV Total energy + Delta-G solvation = -3602.406554 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07232 -39.52070 -38.17811 -35.62911 -34.89099 -32.73621 -31.85445 -31.65664 -30.11349 -28.22564 -27.30442 -26.34015 -24.97505 -23.71314 -22.94279 -21.55002 -21.11873 -19.54860 -19.44262 -17.38354 -16.94286 -16.41255 -15.85926 -15.70803 -15.54664 -14.99200 -14.43680 -14.16450 -13.95419 -13.81471 -13.68910 -13.62256 -13.03998 -12.69061 -12.61653 -12.55889 -12.34817 -12.25287 -12.06982 -11.89388 -11.54273 -11.46869 -11.37456 -11.32523 -10.88101 -10.80992 -10.73210 -10.50051 -10.38819 -9.75990 -9.24632 -9.11737 -8.83202 -8.82440 -7.76463 -7.52530 -6.51552 -4.05141 0.78320 1.33412 2.00349 2.85415 3.11741 3.14298 3.19928 3.26730 3.82949 4.01701 4.21316 4.45144 4.60666 4.68986 4.92325 4.95386 4.99238 5.04132 5.05982 5.18036 5.30179 5.35055 5.43860 5.44470 5.60908 5.64482 5.65192 5.80215 5.85504 5.98885 6.03681 6.07750 6.11883 6.20089 6.24184 6.40358 6.44272 6.48350 6.59661 6.66576 6.85633 6.89937 7.08077 7.40980 7.42002 8.04645 8.33831 8.98474 9.19547 9.79333 10.53244 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003698 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.563992 B = 7569.398741 C = 9293.749054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.143 4.143 4 C -0.072 4.072 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.108 4.108 8 C 0.000 4.000 9 C 0.006 3.994 10 C -0.187 4.187 11 C -0.168 4.168 12 C -0.011 4.011 13 C 0.509 3.491 14 O -0.569 6.569 15 N -0.418 5.418 16 C 0.099 3.901 17 C -0.308 4.308 18 H 0.103 0.897 19 C 0.035 3.965 20 N -0.862 5.862 21 Si 0.929 3.071 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.278 1.278 25 O -0.148 6.148 26 C -0.101 4.101 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.272 0.728 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 15.735 8.609 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.200 4.200 4 C -0.072 4.072 5 C -0.135 4.135 6 C -0.133 4.133 7 C -0.126 4.126 8 C 0.000 4.000 9 C -0.046 4.046 10 C -0.206 4.206 11 C -0.189 4.189 12 C -0.065 4.065 13 C 0.297 3.703 14 O -0.455 6.455 15 N -0.133 5.133 16 C -0.044 4.044 17 C -0.436 4.436 18 H 0.121 0.879 19 C -0.171 4.171 20 N -0.499 5.499 21 Si 0.755 3.245 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.203 1.203 25 O -0.043 6.043 26 C -0.119 4.119 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.719 15.383 8.251 19.087 hybrid contribution 0.179 -0.408 -0.489 0.661 sum -7.540 14.975 7.763 18.476 Atomic orbital electron populations 1.21851 0.94276 1.02199 1.01737 1.20158 0.96009 0.96054 0.95594 1.21852 1.01396 0.95028 1.01751 1.19766 0.97257 0.95363 0.94858 1.21015 1.00518 1.00088 0.91873 1.20958 0.98141 0.95657 0.98562 1.21028 0.98823 0.96857 0.95882 1.17779 0.96532 0.91758 0.93955 1.20566 1.02907 0.97023 0.84066 1.21564 1.02627 0.97236 0.99188 1.21897 1.03716 1.00987 0.92274 1.23403 0.98215 0.88835 0.96057 1.16610 0.86812 0.84970 0.81886 1.90712 1.46848 1.28578 1.79403 1.43502 1.48614 1.17486 1.03721 1.21647 0.96225 0.84144 1.02394 1.19745 1.12078 1.19329 0.92432 0.87940 1.25508 0.94808 0.97076 0.99684 1.69985 1.11439 1.43848 1.24620 0.85820 0.79866 0.78809 0.80010 1.18845 1.20445 1.20348 1.84346 1.52735 1.35383 1.31790 1.21275 0.97187 0.94964 0.98493 0.92587 0.92359 0.92362 0.90044 0.92421 0.92361 0.92586 0.86159 0.85733 0.85579 0.83377 0.82731 0.88917 0.93172 0.95129 0.91771 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 2 C -0.06 -0.58 3.09 -91.78 -0.28 -0.86 16 3 C -0.14 -1.19 9.01 37.16 0.33 -0.85 16 4 C -0.07 -0.83 4.78 -104.68 -0.50 -1.33 16 5 C -0.12 -1.18 8.71 -39.48 -0.34 -1.52 16 6 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 7 C -0.11 -1.27 9.56 -39.16 -0.37 -1.64 16 8 C 0.00 0.00 5.87 -104.98 -0.62 -0.62 16 9 C 0.01 0.11 7.02 -36.33 -0.25 -0.15 16 10 C -0.19 -3.03 10.21 -39.59 -0.40 -3.44 16 11 C -0.17 -3.22 10.66 -39.11 -0.42 -3.64 16 12 C -0.01 -0.25 6.84 -36.44 -0.25 -0.50 16 13 C 0.51 13.45 7.58 -13.00 -0.10 13.35 16 14 O -0.57 -16.47 16.64 5.12 0.09 -16.39 16 15 N -0.42 -11.16 2.97 -123.81 -0.37 -11.53 16 16 C 0.10 2.33 7.82 59.85 0.47 2.80 16 17 C -0.31 -8.59 9.11 -15.04 -0.14 -8.73 16 18 H 0.10 2.94 7.55 -52.48 -0.40 2.55 16 19 C 0.03 0.91 4.89 -17.45 -0.09 0.83 16 20 N -0.86 -22.81 11.26 55.50 0.62 -22.19 16 21 Si 0.93 20.13 29.58 -169.99 -5.03 15.10 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 O -0.15 -3.00 7.19 3.59 0.03 -2.98 16 26 C -0.10 -1.41 9.34 -39.16 -0.37 -1.77 16 27 H 0.06 0.43 7.38 -51.93 -0.38 0.04 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 7.38 -51.92 -0.38 0.03 16 34 H 0.12 0.95 7.08 -52.48 -0.37 0.58 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.25 6.96 -52.49 -0.37 0.89 16 37 H 0.15 1.85 7.23 -52.49 -0.38 1.47 16 38 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 39 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 40 H 0.05 1.17 7.24 -51.92 -0.38 0.80 16 41 H 0.03 0.64 7.41 -51.93 -0.38 0.26 16 42 H 0.27 6.69 8.31 -40.82 -0.34 6.36 16 43 H 0.13 1.90 7.78 -52.49 -0.41 1.49 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -31.06 359.41 -8.48 -39.54 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.84 Total: 3.53 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.39 Total: -10.52 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.26 Total: -33.72 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.11 Total: -19.36 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.06 -8.48 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.010 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds