Wall clock time and date at job start Fri Apr 10 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 C 1.50695 * 109.47413 * 120.00716 * 2 1 3 5 5 C 1.38400 * 119.92607 * 299.99590 * 4 2 1 6 6 C 1.38353 * 120.31632 * 179.97438 * 5 4 2 7 7 C 1.37955 * 120.14960 * 0.02562 * 6 5 4 8 8 C 1.39649 * 119.84437 * 359.97438 * 7 6 5 9 9 C 1.47661 * 120.15039 * 179.97438 * 8 7 6 10 10 C 1.36600 * 125.65007 * 359.97438 * 9 8 7 11 11 C 1.39803 * 107.10570 * 179.76450 * 10 9 8 12 12 C 1.37922 * 106.76779 * 0.41777 * 11 10 9 13 13 C 1.46353 * 125.96679 * 179.84979 * 12 11 10 14 14 O 1.21782 * 120.00019 * 3.49484 * 13 12 11 15 15 N 1.34775 * 120.00497 * 183.50082 * 13 12 11 16 16 C 1.46498 * 119.99789 * 4.87533 * 15 13 12 17 17 C 1.36797 * 120.00341 * 185.15214 * 15 13 12 18 18 H 1.08004 * 119.99311 * 328.81714 * 17 15 13 19 19 C 1.39038 * 120.00403 * 148.82007 * 17 15 13 20 20 N 1.31376 * 119.99921 * 344.06511 * 19 17 15 21 21 Si 1.86796 * 120.00214 * 164.06098 * 19 17 15 22 22 H 1.48505 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47178 * 120.00398 * 21 19 17 24 24 H 1.48503 * 109.47518 * 240.00093 * 21 19 17 25 25 O 1.34387 * 125.65336 * 180.02562 * 9 8 7 26 26 C 1.37919 * 119.92352 * 120.25651 * 4 2 1 27 27 H 1.08998 * 109.47071 * 299.99335 * 1 2 3 28 28 H 1.09000 * 109.47481 * 59.99452 * 1 2 3 29 29 H 1.09004 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46574 * 240.00557 * 2 1 3 31 31 H 1.09001 * 109.46730 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47869 * 300.00403 * 3 2 1 33 33 H 1.09010 * 109.46756 * 60.00809 * 3 2 1 34 34 H 1.08005 * 119.84161 * 359.97438 * 5 4 2 35 35 H 1.07994 * 119.92625 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.07391 * 180.02562 * 7 6 5 37 37 H 1.07993 * 126.44880 * 0.05172 * 10 9 8 38 38 H 1.08003 * 126.61077 * 180.25925 * 11 10 9 39 39 H 1.08996 * 109.47352 * 175.33629 * 16 15 13 40 40 H 1.09009 * 109.47203 * 295.32999 * 16 15 13 41 41 H 1.09003 * 109.47450 * 55.33155 * 16 15 13 42 42 H 0.96992 * 120.00120 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.08053 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.6972 -0.2365 2.4866 6 6 2.1535 -0.8828 3.6216 7 6 2.9473 -2.0054 3.5078 8 6 3.2894 -2.4893 2.2433 9 6 4.1391 -3.6900 2.1136 10 6 4.6541 -4.4166 3.1494 11 6 5.3895 -5.4658 2.5901 12 6 5.2995 -5.3290 1.2207 13 6 5.9200 -6.2058 0.2267 14 8 6.5343 -7.1943 0.5855 15 7 5.8118 -5.9195 -1.0858 16 6 5.1661 -4.6759 -1.5134 17 6 6.2998 -6.7926 -2.0190 18 1 7.1602 -7.4036 -1.7889 19 6 5.6884 -6.8935 -3.2636 20 7 4.4827 -6.4040 -3.4448 21 14 6.5811 -7.7248 -4.6783 22 1 7.9148 -8.1881 -4.2180 23 1 5.7881 -8.8891 -5.1482 24 1 6.7500 -6.7586 -5.7933 25 8 4.5346 -4.2485 0.9571 26 6 2.8296 -1.8286 1.1018 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8902 34 1 1.0764 0.6422 2.5815 35 1 1.8885 -0.5072 4.5988 36 1 3.3025 -2.5092 4.3946 37 1 4.5151 -4.2204 4.2023 38 1 5.9267 -6.2337 3.1270 39 1 5.2453 -4.5789 -2.5961 40 1 4.1146 -4.6952 -1.2264 41 1 5.6576 -3.8283 -1.0357 42 1 4.0563 -6.4740 -4.3131 43 1 3.0935 -2.1953 0.1209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095989285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:34 Heat of formation + Delta-G solvation = -18.637714 kcal Electronic energy + Delta-G solvation = -25369.322201 eV Core-core repulsion = 21766.217246 eV Total energy + Delta-G solvation = -3603.104955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.57751 -40.49098 -40.11736 -36.92960 -36.46102 -34.22927 -33.73071 -32.86287 -31.07789 -29.65171 -28.25876 -27.96032 -26.80457 -24.84673 -24.14381 -22.74261 -22.47301 -21.16239 -20.55883 -19.21336 -18.54580 -17.82958 -17.45996 -17.07269 -16.65933 -16.45465 -16.08790 -15.64010 -15.36662 -14.81004 -14.76427 -14.57423 -14.48943 -14.14241 -14.06072 -13.88189 -13.70641 -13.39637 -13.38142 -13.23578 -12.93897 -12.87799 -12.68586 -12.53818 -12.43888 -12.11782 -12.05330 -11.59268 -11.54395 -11.11565 -11.07473 -10.90317 -10.49400 -9.78684 -9.72805 -8.88394 -8.51219 -6.17419 -0.41794 0.43962 0.57067 1.37785 1.39129 1.54528 1.57631 1.68693 2.21309 2.28911 2.86965 2.87615 2.95923 3.43267 3.70865 3.89556 3.92915 4.00827 4.10733 4.28221 4.32813 4.35517 4.48609 4.50906 4.56245 4.63648 4.71028 4.73383 4.83640 4.85987 4.93057 5.00643 5.03986 5.07525 5.12666 5.22672 5.30210 5.32449 5.37552 5.41161 5.49122 5.55279 5.70926 5.88576 6.01800 6.04041 6.34343 6.93484 7.17557 7.76504 8.54261 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003698 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.563992 B = 7569.398741 C = 9293.749054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.078 4.078 5 C -0.105 4.105 6 C -0.109 4.109 7 C -0.101 4.101 8 C -0.035 4.035 9 C 0.023 3.977 10 C -0.185 4.185 11 C -0.144 4.144 12 C -0.070 4.070 13 C 0.502 3.498 14 O -0.611 6.611 15 N -0.436 5.436 16 C 0.119 3.881 17 C -0.353 4.353 18 H 0.080 0.920 19 C 0.003 3.997 20 N -0.886 5.886 21 Si 1.000 3.000 22 H -0.268 1.268 23 H -0.272 1.272 24 H -0.260 1.260 25 O -0.163 6.163 26 C -0.121 4.121 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.195 0.805 38 H 0.164 0.836 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.281 0.719 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 18.544 10.562 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.078 4.078 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.035 4.035 9 C -0.029 4.029 10 C -0.204 4.204 11 C -0.165 4.165 12 C -0.123 4.123 13 C 0.293 3.707 14 O -0.500 6.500 15 N -0.151 5.151 16 C -0.024 4.024 17 C -0.480 4.480 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.522 5.522 21 Si 0.821 3.179 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.184 1.184 25 O -0.059 6.059 26 C -0.140 4.140 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.212 0.788 38 H 0.181 0.819 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.545 18.219 10.197 22.956 hybrid contribution 0.555 -1.046 -0.911 1.494 sum -8.990 17.173 9.286 21.493 Atomic orbital electron populations 1.21834 0.93065 1.01718 1.03116 1.20199 0.96959 0.96701 0.94263 1.21830 1.00698 0.94008 1.03098 1.19976 0.96695 0.94610 0.96504 1.21442 0.99372 1.00384 0.91028 1.21426 0.96523 0.94423 1.00248 1.21363 0.98199 0.97182 0.95135 1.17943 0.98256 0.91746 0.95600 1.21420 1.01133 0.96956 0.83384 1.21953 1.01699 0.95654 1.01061 1.22222 1.02127 1.01109 0.91083 1.22664 1.02292 0.91235 0.96110 1.17095 0.85945 0.85197 0.82474 1.90636 1.48505 1.30515 1.80361 1.43704 1.49208 1.18238 1.03995 1.21465 0.95663 0.83689 1.01554 1.19764 1.12910 1.21189 0.94184 0.90206 1.26369 0.95273 0.97129 1.01286 1.70044 1.12294 1.44219 1.25646 0.84804 0.78287 0.78097 0.76678 1.19181 1.19730 1.18406 1.84282 1.52891 1.35144 1.33584 1.21267 0.98670 0.96427 0.97593 0.90910 0.91308 0.93756 0.91869 0.93513 0.91321 0.90956 0.83058 0.81863 0.83243 0.78762 0.81891 0.89962 0.93954 0.93585 0.90960 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.01 71.98 0.65 -1.44 16 2 C -0.06 -1.14 3.09 -11.54 -0.04 -1.17 16 3 C -0.14 -1.99 9.01 71.98 0.65 -1.34 16 4 C -0.08 -1.65 4.78 -19.90 -0.10 -1.74 16 5 C -0.10 -1.66 8.71 22.34 0.19 -1.46 16 6 C -0.11 -1.61 10.03 22.23 0.22 -1.39 16 7 C -0.10 -1.98 9.56 22.54 0.22 -1.77 16 8 C -0.04 -0.98 5.87 -20.10 -0.12 -1.10 16 9 C 0.02 0.78 7.02 24.38 0.17 0.95 16 10 C -0.19 -5.65 10.21 22.27 0.23 -5.42 16 11 C -0.14 -5.56 10.66 22.57 0.24 -5.32 16 12 C -0.07 -3.30 6.84 24.31 0.17 -3.13 16 13 C 0.50 28.38 7.58 86.35 0.65 29.03 16 14 O -0.61 -37.76 16.64 -4.61 -0.08 -37.84 16 15 N -0.44 -24.89 2.97 -663.80 -1.97 -26.86 16 16 C 0.12 5.95 7.82 127.77 1.00 6.95 16 17 C -0.35 -20.93 9.11 84.11 0.77 -20.16 16 18 H 0.08 4.95 7.55 -2.91 -0.02 4.93 16 19 C 0.00 0.17 4.89 84.95 0.42 0.59 16 20 N -0.89 -48.35 11.26 21.68 0.24 -48.11 16 21 Si 1.00 42.27 29.58 68.60 2.03 44.30 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 O -0.16 -6.92 7.19 -10.07 -0.07 -6.99 16 26 C -0.12 -3.38 9.34 22.54 0.21 -3.17 16 27 H 0.07 0.83 7.38 -2.39 -0.02 0.82 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.35 7.87 -2.39 -0.02 1.33 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.80 7.38 -2.38 -0.02 0.78 16 34 H 0.15 1.50 7.08 -2.91 -0.02 1.48 16 35 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.15 2.19 6.96 -2.91 -0.02 2.17 16 37 H 0.20 3.97 7.23 -2.91 -0.02 3.95 16 38 H 0.16 5.89 8.06 -2.91 -0.02 5.86 16 39 H 0.08 4.20 6.07 -2.39 -0.01 4.19 16 40 H 0.04 2.12 7.24 -2.38 -0.02 2.11 16 41 H 0.05 2.08 7.41 -2.39 -0.02 2.06 16 42 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.11 3.35 7.78 -2.91 -0.02 3.32 16 Total: -1.00 -73.20 359.41 6.70 -66.50 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.02 Total: 20.11 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.53 Total: -11.12 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.73 Total: -74.96 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -0.15 Total: -44.83 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -73.20 6.70 -66.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095989285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.862 kcal (2) G-P(sol) polarization free energy of solvation -73.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds