Wall clock time and date at job start Fri Apr 10 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30874 * 125.87875 * 2 1 4 4 N 1.40086 * 108.21663 * 180.15938 * 3 2 1 5 5 C 1.40192 * 126.05284 * 179.81827 * 4 3 2 6 6 C 1.38837 * 120.06496 * 359.69124 * 5 4 3 7 7 C 1.38112 * 119.93437 * 179.97438 * 6 5 4 8 8 C 1.38283 * 120.06662 * 359.97438 * 7 6 5 9 9 C 1.38286 * 120.13026 * 0.02562 * 8 7 6 10 10 C 1.38113 * 120.06881 * 0.02562 * 9 8 7 11 11 C 1.35222 * 107.89382 * 359.55455 * 4 3 2 12 12 C 1.35316 * 107.71107 * 0.26169 * 11 4 3 13 13 C 1.50705 * 126.03134 * 179.97438 * 12 11 4 14 14 C 1.53000 * 109.47015 * 265.02892 * 13 12 11 15 15 C 1.53006 * 109.46776 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.46938 * 179.97438 * 15 14 13 17 17 C 1.34776 * 119.99795 * 179.97438 * 16 15 14 18 18 O 1.21691 * 119.99907 * 0.02562 * 17 16 15 19 19 C 1.46373 * 119.99631 * 180.02562 * 17 16 15 20 20 H 1.07993 * 120.00402 * 353.93673 * 19 17 16 21 21 C 1.40047 * 119.99886 * 173.94284 * 19 17 16 22 22 N 1.30680 * 119.99778 * 6.14765 * 21 19 17 23 23 Si 1.86796 * 120.00316 * 186.15136 * 21 19 17 24 24 H 1.48490 * 109.47441 * 94.98089 * 23 21 19 25 25 H 1.48499 * 109.47434 * 214.98361 * 23 21 19 26 26 H 1.48505 * 109.46694 * 334.97942 * 23 21 19 27 27 H 1.08998 * 109.47396 * 270.33439 * 1 2 3 28 28 H 1.09002 * 109.47143 * 30.32986 * 1 2 3 29 29 H 1.08998 * 109.47585 * 150.33052 * 1 2 3 30 30 H 1.08004 * 120.03245 * 359.97438 * 6 5 4 31 31 H 1.07993 * 119.96995 * 179.72281 * 7 6 5 32 32 H 1.07992 * 119.93534 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.96619 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.03555 * 180.02562 * 10 9 8 35 35 H 1.08003 * 126.14342 * 180.28702 * 11 4 3 36 36 H 1.09001 * 109.47127 * 25.02764 * 13 12 11 37 37 H 1.09003 * 109.47065 * 145.02642 * 13 12 11 38 38 H 1.09001 * 109.47068 * 299.99908 * 14 13 12 39 39 H 1.08990 * 109.47301 * 60.00286 * 14 13 12 40 40 H 1.09001 * 109.47065 * 299.99687 * 15 14 13 41 41 H 1.09003 * 109.47367 * 59.99712 * 15 14 13 42 42 H 0.96999 * 119.99874 * 0.02562 * 16 15 14 43 43 H 0.97003 * 119.99467 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0604 0.0000 4 7 3.6088 0.6354 -0.0037 5 6 4.7389 1.4651 -0.0085 6 6 4.5884 2.8452 -0.0164 7 6 5.7036 3.6601 -0.0206 8 6 6.9690 3.1025 -0.0163 9 6 7.1220 1.7282 -0.0085 10 6 6.0106 0.9082 -0.0053 11 6 3.6143 -0.7168 0.0041 12 6 2.3270 -1.1337 0.0065 13 6 1.8591 -2.5662 0.0143 14 6 1.5817 -3.0199 -1.4204 15 6 1.1060 -4.4741 -1.4124 16 7 0.8398 -4.9083 -2.7860 17 6 0.4080 -6.1625 -3.0246 18 8 0.2388 -6.9341 -2.0989 19 6 0.1425 -6.5965 -4.3970 20 1 0.1978 -5.8859 -5.2083 21 6 -0.1832 -7.9333 -4.6581 22 7 -0.3681 -8.7661 -3.6682 23 14 -0.3532 -8.5261 -6.4214 24 1 0.9313 -9.1211 -6.8696 25 1 -1.4263 -9.5496 -6.4983 26 1 -0.6998 -7.3786 -7.2980 27 1 -0.3634 0.0060 1.0276 28 1 -0.3633 0.8870 -0.5190 29 1 -0.3634 -0.8929 -0.5087 30 1 3.6003 3.2813 -0.0193 31 1 5.5872 4.7336 -0.0313 32 1 7.8395 3.7416 -0.0200 33 1 8.1116 1.2956 -0.0056 34 1 6.1308 -0.1651 0.0013 35 1 4.4891 -1.3502 0.0081 36 1 2.6315 -3.1984 0.4523 37 1 0.9459 -2.6470 0.6040 38 1 0.8092 -2.3877 -1.8584 39 1 2.4948 -2.9391 -2.0099 40 1 1.8782 -5.1065 -0.9743 41 1 0.1927 -4.5545 -0.8228 42 1 0.9750 -4.2933 -3.5239 43 1 -0.5941 -9.6919 -3.8490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153568040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:52 Heat of formation + Delta-G solvation = 26.271948 kcal Electronic energy + Delta-G solvation = -23929.061306 eV Core-core repulsion = 20360.196531 eV Total energy + Delta-G solvation = -3568.864775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.67295 -39.98995 -39.39892 -36.67379 -35.15572 -34.56193 -33.59386 -32.13212 -31.63510 -30.55933 -28.69755 -28.21934 -26.28434 -23.82438 -23.49708 -22.50683 -21.72888 -21.53672 -20.27189 -19.12900 -19.00957 -17.40402 -17.11411 -16.48734 -16.42218 -16.25818 -15.92855 -15.86135 -15.60900 -14.99985 -14.56950 -14.49007 -14.44846 -14.31725 -13.97346 -13.79092 -13.51194 -13.25966 -13.11674 -13.02718 -12.83006 -12.70610 -12.58014 -12.56554 -12.32512 -12.05423 -11.98200 -11.73119 -11.36329 -10.99548 -10.91801 -10.04656 -10.01636 -9.83005 -9.43423 -8.92003 -8.28441 -6.83385 -0.17896 0.31593 1.16290 1.36056 1.41231 1.42438 1.58365 1.62189 2.26366 2.48807 2.78637 3.19306 3.37550 3.63473 3.71237 3.88559 3.91884 4.00422 4.12814 4.19443 4.23248 4.41687 4.46473 4.48026 4.52705 4.60466 4.71715 4.76544 4.79536 4.92250 4.97079 5.00390 5.02613 5.06937 5.28501 5.33962 5.37305 5.38350 5.40986 5.49802 5.67724 5.79261 5.90648 6.19805 6.27185 6.32783 6.60538 6.88394 7.58447 8.51293 8.69086 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002071 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.768371 B =13518.803016 C =14090.700668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.081 3.919 3 N -0.325 5.325 4 N -0.333 5.333 5 C 0.135 3.865 6 C -0.144 4.144 7 C -0.098 4.098 8 C -0.130 4.130 9 C -0.091 4.091 10 C -0.151 4.151 11 C 0.053 3.947 12 C -0.224 4.224 13 C -0.030 4.030 14 C -0.102 4.102 15 C 0.134 3.866 16 N -0.758 5.758 17 C 0.536 3.464 18 O -0.634 6.634 19 C -0.575 4.575 20 H 0.087 0.913 21 C 0.027 3.973 22 N -0.822 5.822 23 Si 0.999 3.001 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.249 1.249 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.203 0.797 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.394 0.606 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.960 24.655 6.607 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 N -0.146 5.146 4 N -0.107 5.107 5 C 0.043 3.957 6 C -0.164 4.164 7 C -0.116 4.116 8 C -0.149 4.149 9 C -0.110 4.110 10 C -0.171 4.171 11 C -0.089 4.089 12 C -0.234 4.234 13 C -0.069 4.069 14 C -0.140 4.140 15 C 0.009 3.991 16 N -0.412 5.412 17 C 0.340 3.660 18 O -0.522 6.522 19 C -0.612 4.612 20 H 0.105 0.895 21 C -0.188 4.188 22 N -0.452 5.452 23 Si 0.818 3.182 24 H -0.188 1.188 25 H -0.197 1.197 26 H -0.172 1.172 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.219 0.781 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.228 0.772 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.893 25.260 7.371 29.756 hybrid contribution -0.300 -1.118 -0.750 1.380 sum 13.592 24.142 6.621 28.486 Atomic orbital electron populations 1.20344 0.84734 1.04213 1.04158 1.22897 0.98261 0.90114 0.97266 1.77296 0.86378 1.23677 1.27254 1.45803 1.04236 1.04671 1.56019 1.17987 0.84034 0.90455 1.03241 1.20991 1.00730 0.91251 1.03383 1.21373 0.91593 1.00950 0.97681 1.21640 0.98066 0.95574 0.99591 1.21393 0.98848 0.93634 0.97089 1.21130 0.89862 1.01820 1.04305 1.22863 1.00434 0.84149 1.01430 1.20168 0.91769 0.96597 1.14905 1.19748 1.02134 0.89294 0.95740 1.21606 1.01598 0.92837 0.97960 1.21008 0.98406 0.95186 0.84480 1.45844 1.73228 1.14223 1.07888 1.18625 0.76671 0.80312 0.90420 1.90544 1.59108 1.54990 1.47557 1.21445 1.50913 0.96310 0.92533 0.89500 1.27000 0.91483 0.96448 1.03868 1.70201 1.34643 1.04992 1.35341 0.84993 0.78731 0.78698 0.75764 1.18763 1.19724 1.17186 0.89018 0.90398 0.89296 0.86051 0.83063 0.82525 0.82204 0.83897 0.78051 0.90130 0.90217 0.91199 0.91361 0.94880 0.94725 0.77212 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.21 71.24 0.73 -0.72 16 2 C 0.08 2.01 7.22 43.11 0.31 2.32 16 3 N -0.33 -8.95 11.87 -47.34 -0.56 -9.51 16 4 N -0.33 -8.20 3.80 -187.76 -0.71 -8.91 16 5 C 0.13 2.85 6.69 38.09 0.25 3.11 16 6 C -0.14 -2.82 9.66 22.38 0.22 -2.60 16 7 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 8 C -0.13 -1.33 10.04 22.29 0.22 -1.11 16 9 C -0.09 -1.00 10.04 22.25 0.22 -0.78 16 10 C -0.15 -2.33 9.46 22.38 0.21 -2.12 16 11 C 0.05 1.15 10.71 83.50 0.89 2.04 16 12 C -0.22 -5.22 5.35 -20.13 -0.11 -5.33 16 13 C -0.03 -0.68 5.33 29.85 0.16 -0.52 16 14 C -0.10 -2.72 5.31 30.60 0.16 -2.56 16 15 C 0.13 5.08 5.67 86.38 0.49 5.57 16 16 N -0.76 -34.46 5.55 -467.39 -2.59 -37.05 16 17 C 0.54 31.67 7.74 86.36 0.67 32.34 16 18 O -0.63 -43.30 15.05 -4.32 -0.07 -43.36 16 19 C -0.58 -33.07 9.53 24.83 0.24 -32.84 16 20 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 21 C 0.03 1.52 5.49 85.30 0.47 1.99 16 22 N -0.82 -50.94 11.85 21.84 0.26 -50.68 16 23 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.61 7.70 -2.39 -0.02 1.59 16 30 H 0.12 2.63 7.70 -2.91 -0.02 2.61 16 31 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 34 H 0.14 1.71 6.74 -2.91 -0.02 1.69 16 35 H 0.20 3.01 7.04 -2.91 -0.02 2.99 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.07 1.81 7.88 -2.39 -0.02 1.79 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.39 15.45 8.45 -92.71 -0.78 14.67 16 43 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 Total: -1.00 -83.37 370.29 3.96 -79.42 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.24 Total: 29.06 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.36 Total: -2.27 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -3.61 Total: -106.16 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.07 Total: -43.36 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -83.37 3.96 -79.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153568040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.689 kcal (2) G-P(sol) polarization free energy of solvation -83.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds