Wall clock time and date at job start Fri Apr 10 2020 18:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38368 * 119.93379 * 2 1 4 4 C 1.38319 * 120.28072 * 179.97438 * 3 2 1 5 5 C 1.37995 * 120.13887 * 359.76587 * 4 3 2 6 6 C 1.39484 * 119.85824 * 0.49181 * 5 4 3 7 7 C 1.47980 * 120.13619 * 179.76433 * 6 5 4 8 8 N 1.36293 * 126.33639 * 134.74889 * 7 6 5 9 9 H 0.96990 * 126.14277 * 359.97438 * 8 7 6 10 10 N 1.40079 * 107.71810 * 179.97438 * 8 7 6 11 11 C 1.30895 * 108.50974 * 359.75267 * 10 8 7 12 12 C 1.36624 * 126.33996 * 314.72127 * 7 6 5 13 13 C 1.50705 * 126.07231 * 359.97438 * 12 7 6 14 14 N 1.46895 * 109.47037 * 80.00063 * 13 12 7 15 15 C 1.47961 * 111.00270 * 189.99913 * 14 13 12 16 16 C 1.53934 * 86.18427 * 222.41862 * 15 14 13 17 17 O 1.42895 * 113.73076 * 269.25870 * 16 15 14 18 18 C 1.50696 * 113.73266 * 138.07361 * 16 15 14 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99717 * 179.97438 * 18 16 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47958 * 110.99863 * 90.64034 * 14 13 12 27 27 C 1.37951 * 119.93239 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47319 * 270.02334 * 1 2 3 29 29 H 1.09008 * 109.47254 * 30.02339 * 1 2 3 30 30 H 1.09000 * 109.47355 * 150.01723 * 1 2 3 31 31 H 1.07999 * 119.85762 * 0.02562 * 3 2 1 32 32 H 1.08008 * 119.92770 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.07539 * 180.27388 * 5 4 3 34 34 H 1.07998 * 125.70180 * 180.22101 * 11 10 8 35 35 H 1.08997 * 109.46831 * 319.99902 * 13 12 7 36 36 H 1.08996 * 109.46937 * 200.00175 * 13 12 7 37 37 H 1.08996 * 113.76309 * 108.09300 * 15 14 13 38 38 H 1.09008 * 113.85816 * 336.74814 * 15 14 13 39 39 H 0.96697 * 114.00066 * 178.10080 * 17 16 15 40 40 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 41 41 H 1.08993 * 113.76569 * 23.26601 * 26 14 13 42 42 H 1.09005 * 113.75789 * 251.89882 * 26 14 13 43 43 H 1.08003 * 120.07097 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5805 1.2075 0.0005 5 6 4.2806 0.0183 0.0059 6 6 3.5905 -1.1938 0.0005 7 6 4.3351 -2.4727 0.0010 8 7 4.0702 -3.5611 0.7774 9 1 3.3580 -3.6376 1.4313 10 7 5.0112 -4.5494 0.4612 11 6 5.8067 -4.0837 -0.4680 12 6 5.4150 -2.7811 -0.7771 13 6 6.0634 -1.8770 -1.7936 14 7 6.9477 -0.9248 -1.1086 15 6 7.4159 0.1271 -2.0378 16 6 8.7966 -0.0513 -1.3810 17 8 9.0165 0.8095 -0.2618 18 6 9.9405 -0.0433 -2.3621 19 1 9.7461 0.0805 -3.4172 20 6 11.2353 -0.1931 -1.9124 21 7 12.2337 -0.1856 -2.7685 22 14 11.5714 -0.4065 -0.0874 23 1 11.7719 0.9253 0.5382 24 1 10.4160 -1.0852 0.5527 25 1 12.7936 -1.2294 0.0978 26 6 8.3210 -1.4637 -0.9954 27 6 2.1953 -1.1955 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6540 2.1324 0.0004 32 1 4.1137 2.1468 0.0009 33 1 5.3606 0.0261 0.0108 34 1 6.6305 -4.6177 -0.9181 35 1 5.2930 -1.3306 -2.3377 36 1 6.6466 -2.4760 -2.4929 37 1 6.9667 1.1038 -1.8578 38 1 7.3874 -0.1670 -3.0871 39 1 9.8713 0.6805 0.1716 40 1 13.1446 -0.2906 -2.4522 41 1 8.5569 -2.2248 -1.7391 42 1 8.5952 -1.7580 0.0178 43 1 1.6553 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170088974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:55 Heat of formation + Delta-G solvation = 99.505179 kcal Electronic energy + Delta-G solvation = -25957.264163 eV Core-core repulsion = 22391.575019 eV Total energy + Delta-G solvation = -3565.689144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19170 -39.19770 -39.06016 -35.00495 -33.31137 -32.41864 -32.13826 -31.76100 -29.66364 -27.83551 -26.95474 -25.61260 -25.34377 -23.29712 -22.12521 -21.58946 -21.40553 -19.05790 -19.05194 -17.67362 -17.19730 -16.22175 -16.17209 -15.46568 -15.15312 -15.07259 -14.51217 -14.20234 -14.04542 -13.91130 -13.81220 -13.30349 -13.23524 -12.96153 -12.76796 -12.53685 -12.44387 -12.21580 -12.03649 -11.88062 -11.25716 -11.21313 -11.00772 -10.97222 -10.67545 -10.47169 -10.25518 -9.94873 -9.68549 -9.34977 -9.01441 -8.87250 -8.71841 -8.57286 -8.03274 -7.98968 -6.31659 -4.35397 0.95467 1.36497 2.07141 2.82710 2.93002 3.08345 3.16115 3.23704 3.75924 4.14611 4.47350 4.66832 4.71806 4.81056 4.84699 4.90547 5.07346 5.18764 5.32633 5.35311 5.41051 5.48291 5.51811 5.61813 5.68522 5.73847 5.79742 5.89687 5.93619 6.03502 6.09630 6.24184 6.32192 6.42834 6.47497 6.58221 6.60674 6.66525 6.71157 6.92224 6.99420 7.03707 7.29223 7.36434 7.72290 7.78238 8.15935 8.69809 8.71195 9.28290 10.81026 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004018 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.078041 B = 6966.873304 C = 7937.888706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.113 4.113 4 C -0.117 4.117 5 C -0.084 4.084 6 C -0.034 4.034 7 C 0.137 3.863 8 N -0.478 5.478 9 H 0.435 0.565 10 N -0.294 5.294 11 C 0.058 3.942 12 C -0.194 4.194 13 C 0.091 3.909 14 N -0.474 5.474 15 C 0.023 3.977 16 C 0.201 3.799 17 O -0.552 6.552 18 C -0.536 4.536 19 H 0.085 0.915 20 C 0.078 3.922 21 N -0.884 5.884 22 Si 0.859 3.141 23 H -0.269 1.269 24 H -0.253 1.253 25 H -0.287 1.287 26 C -0.025 4.025 27 C -0.109 4.109 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.164 0.836 34 H 0.182 0.818 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.347 0.653 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.058 -1.928 5.413 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.135 4.135 5 C -0.103 4.103 6 C -0.036 4.036 7 C 0.009 3.991 8 N -0.187 5.187 9 H 0.278 0.722 10 N -0.116 5.116 11 C -0.128 4.128 12 C -0.205 4.205 13 C -0.038 4.038 14 N -0.196 5.196 15 C -0.106 4.106 16 C 0.160 3.840 17 O -0.363 6.363 18 C -0.574 4.574 19 H 0.103 0.897 20 C -0.126 4.126 21 N -0.520 5.520 22 Si 0.688 3.312 23 H -0.196 1.196 24 H -0.178 1.178 25 H -0.214 1.214 26 C -0.154 4.154 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.181 0.819 34 H 0.199 0.801 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.199 0.801 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.057 -2.617 6.521 22.198 hybrid contribution 1.119 -0.125 0.132 1.133 sum -19.938 -2.741 6.653 21.197 Atomic orbital electron populations 1.20759 0.91258 1.02682 1.02125 1.19717 0.95881 0.92920 1.01220 1.21160 0.94507 0.97296 1.00128 1.21209 0.93877 0.98539 0.99868 1.22062 1.03115 0.90324 0.94802 1.18013 0.91884 0.90356 1.03388 1.19316 0.96903 0.88109 0.94781 1.46482 1.27852 1.10379 1.34018 0.72184 1.77252 1.03320 1.12453 1.18586 1.23693 0.98924 0.94572 0.95566 1.19929 0.99162 0.96067 1.05364 1.20927 0.96655 0.93501 0.92746 1.68404 1.08051 1.08010 1.35185 1.24004 0.95040 0.96142 0.95384 1.20470 0.93545 0.85575 0.84429 1.86447 1.39435 1.63141 1.47230 1.21410 0.89717 1.51059 0.95168 0.89678 1.25004 0.96238 0.93787 0.97611 1.69877 0.99559 1.48258 1.34311 0.87317 0.78735 0.79001 0.86127 1.19552 1.17791 1.21404 1.25045 0.88599 1.00654 1.01097 1.21013 0.92835 0.97622 1.01366 0.91394 0.91531 0.91759 0.86183 0.85441 0.81855 0.80089 0.90987 0.92846 0.90190 0.90804 0.80108 0.92153 0.90793 0.91116 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.10 -0.99 5.87 -104.68 -0.61 -1.60 16 3 C -0.11 -1.18 9.69 -39.50 -0.38 -1.56 16 4 C -0.12 -1.41 10.03 -39.64 -0.40 -1.81 16 5 C -0.08 -1.18 9.01 -39.21 -0.35 -1.54 16 6 C -0.03 -0.46 5.69 -104.96 -0.60 -1.05 16 7 C 0.14 1.95 6.66 -82.48 -0.55 1.40 16 8 N -0.48 -6.28 7.43 33.28 0.25 -6.04 16 9 H 0.43 4.37 8.96 -182.62 -1.64 2.74 16 10 N -0.29 -4.42 12.68 30.56 0.39 -4.03 16 11 C 0.06 0.87 11.92 -17.48 -0.21 0.66 16 12 C -0.19 -2.97 5.65 -104.73 -0.59 -3.56 16 13 C 0.09 1.43 4.36 -4.98 -0.02 1.41 16 14 N -0.47 -8.63 3.86 -239.68 -0.93 -9.56 16 15 C 0.02 0.44 7.33 -2.77 -0.02 0.42 16 16 C 0.20 4.62 1.05 -90.84 -0.10 4.52 16 17 O -0.55 -13.24 13.32 -35.23 -0.47 -13.70 16 18 C -0.54 -14.29 9.20 -34.44 -0.32 -14.61 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 20 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 21 N -0.88 -25.61 13.96 55.43 0.77 -24.83 16 22 Si 0.86 19.93 24.34 -169.99 -4.14 15.80 16 23 H -0.27 -6.07 7.06 56.52 0.40 -5.67 16 24 H -0.25 -5.61 5.28 56.52 0.30 -5.31 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.02 -0.51 6.54 -2.76 -0.02 -0.53 16 27 C -0.11 -1.22 9.43 -39.21 -0.37 -1.59 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.09 -51.92 -0.42 0.00 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 33 H 0.16 2.67 5.52 -52.49 -0.29 2.38 16 34 H 0.18 2.30 8.06 -52.49 -0.42 1.87 16 35 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.05 0.83 7.38 -51.93 -0.38 0.44 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.38 7.88 -51.92 -0.41 0.97 16 39 H 0.35 8.12 3.31 45.56 0.15 8.27 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.07 1.50 7.43 -51.93 -0.39 1.11 16 42 H 0.07 1.52 6.98 -51.93 -0.36 1.15 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -30.47 349.52 -9.91 -40.38 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.77 Total: 14.58 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -4.28 Total: -17.86 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.48 Total: -44.46 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.47 Total: -13.70 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.14 Total: 15.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.47 -9.91 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170088974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.885 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds