Wall clock time and date at job start Fri Apr 10 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38368 * 119.93379 * 2 1 4 4 C 1.38319 * 120.28072 * 179.97438 * 3 2 1 5 5 C 1.37995 * 120.13887 * 359.76587 * 4 3 2 6 6 C 1.39484 * 119.85824 * 0.49181 * 5 4 3 7 7 C 1.47980 * 120.13619 * 179.76433 * 6 5 4 8 8 N 1.36293 * 126.33639 * 134.74889 * 7 6 5 9 9 H 0.96990 * 126.14277 * 359.97438 * 8 7 6 10 10 N 1.40079 * 107.71810 * 179.97438 * 8 7 6 11 11 C 1.30895 * 108.50974 * 359.75267 * 10 8 7 12 12 C 1.36624 * 126.33996 * 314.72127 * 7 6 5 13 13 C 1.50705 * 126.07231 * 359.97438 * 12 7 6 14 14 N 1.46895 * 109.47037 * 80.00063 * 13 12 7 15 15 C 1.47961 * 111.00270 * 189.99913 * 14 13 12 16 16 C 1.53934 * 86.18427 * 222.41862 * 15 14 13 17 17 O 1.42895 * 113.73076 * 269.25870 * 16 15 14 18 18 C 1.50696 * 113.73266 * 138.07361 * 16 15 14 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99717 * 179.97438 * 18 16 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47958 * 110.99863 * 90.64034 * 14 13 12 27 27 C 1.37951 * 119.93239 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47319 * 270.02334 * 1 2 3 29 29 H 1.09008 * 109.47254 * 30.02339 * 1 2 3 30 30 H 1.09000 * 109.47355 * 150.01723 * 1 2 3 31 31 H 1.07999 * 119.85762 * 0.02562 * 3 2 1 32 32 H 1.08008 * 119.92770 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.07539 * 180.27388 * 5 4 3 34 34 H 1.07998 * 125.70180 * 180.22101 * 11 10 8 35 35 H 1.08997 * 109.46831 * 319.99902 * 13 12 7 36 36 H 1.08996 * 109.46937 * 200.00175 * 13 12 7 37 37 H 1.08996 * 113.76309 * 108.09300 * 15 14 13 38 38 H 1.09008 * 113.85816 * 336.74814 * 15 14 13 39 39 H 0.96697 * 114.00066 * 178.10080 * 17 16 15 40 40 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 41 41 H 1.08993 * 113.76569 * 23.26601 * 26 14 13 42 42 H 1.09005 * 113.75789 * 251.89882 * 26 14 13 43 43 H 1.08003 * 120.07097 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1991 0.0000 4 6 3.5805 1.2075 0.0005 5 6 4.2806 0.0183 0.0059 6 6 3.5905 -1.1938 0.0005 7 6 4.3351 -2.4727 0.0010 8 7 4.0702 -3.5611 0.7774 9 1 3.3580 -3.6376 1.4313 10 7 5.0112 -4.5494 0.4612 11 6 5.8067 -4.0837 -0.4680 12 6 5.4150 -2.7811 -0.7771 13 6 6.0634 -1.8770 -1.7936 14 7 6.9477 -0.9248 -1.1086 15 6 7.4159 0.1271 -2.0378 16 6 8.7966 -0.0513 -1.3810 17 8 9.0165 0.8095 -0.2618 18 6 9.9405 -0.0433 -2.3621 19 1 9.7461 0.0805 -3.4172 20 6 11.2353 -0.1931 -1.9124 21 7 12.2337 -0.1856 -2.7685 22 14 11.5714 -0.4065 -0.0874 23 1 11.7719 0.9253 0.5382 24 1 10.4160 -1.0852 0.5527 25 1 12.7936 -1.2294 0.0978 26 6 8.3210 -1.4637 -0.9954 27 6 2.1953 -1.1955 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6540 2.1324 0.0004 32 1 4.1137 2.1468 0.0009 33 1 5.3606 0.0261 0.0108 34 1 6.6305 -4.6177 -0.9181 35 1 5.2930 -1.3306 -2.3377 36 1 6.6466 -2.4760 -2.4929 37 1 6.9667 1.1038 -1.8578 38 1 7.3874 -0.1670 -3.0871 39 1 9.8713 0.6805 0.1716 40 1 13.1446 -0.2906 -2.4522 41 1 8.5569 -2.2248 -1.7391 42 1 8.5952 -1.7580 0.0178 43 1 1.6553 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170088974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:54 Heat of formation + Delta-G solvation = 78.589744 kcal Electronic energy + Delta-G solvation = -25958.171124 eV Core-core repulsion = 22391.575019 eV Total energy + Delta-G solvation = -3566.596105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29661 -40.82827 -39.93350 -36.74853 -34.50296 -34.20491 -33.22367 -32.83799 -30.77644 -29.37645 -27.70683 -27.23514 -26.97239 -24.43188 -23.48978 -22.56740 -22.42666 -20.80179 -20.17613 -19.29395 -18.59588 -18.07288 -17.16421 -16.85789 -16.29859 -16.16749 -15.77642 -15.57161 -15.40132 -14.99846 -14.85580 -14.75932 -14.54639 -14.43328 -13.87951 -13.85963 -13.75414 -13.43451 -13.03076 -12.93576 -12.80926 -12.63503 -12.42589 -12.25972 -12.00918 -11.90127 -11.84715 -11.51791 -11.13829 -10.91447 -10.72394 -10.44092 -9.94592 -9.60920 -9.54726 -9.12344 -8.41853 -6.50366 0.01254 0.49263 1.02660 1.22589 1.29731 1.37623 1.70874 1.91033 2.18114 2.82809 2.86105 3.13299 3.53584 3.64257 3.71686 3.97002 4.03018 4.07314 4.19835 4.25895 4.32505 4.37909 4.46922 4.51421 4.62277 4.70777 4.78094 4.83760 4.86670 4.87788 4.97128 4.99093 5.03576 5.15069 5.22900 5.34179 5.37830 5.49912 5.57310 5.63761 5.66337 5.69883 6.06597 6.09651 6.27470 6.31605 6.55036 6.64779 6.81017 7.17356 8.74155 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004018 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.078041 B = 6966.873304 C = 7937.888706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.110 4.110 4 C -0.125 4.125 5 C -0.105 4.105 6 C -0.048 4.048 7 C 0.144 3.856 8 N -0.468 5.468 9 H 0.447 0.553 10 N -0.311 5.311 11 C 0.052 3.948 12 C -0.218 4.218 13 C 0.098 3.902 14 N -0.462 5.462 15 C 0.031 3.969 16 C 0.184 3.816 17 O -0.557 6.557 18 C -0.542 4.542 19 H 0.051 0.949 20 C 0.025 3.975 21 N -0.930 5.930 22 Si 0.919 3.081 23 H -0.256 1.256 24 H -0.237 1.237 25 H -0.286 1.286 26 C -0.015 4.015 27 C -0.109 4.109 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.196 0.804 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.348 0.652 40 H 0.271 0.729 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.855 -1.963 6.926 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.143 4.143 5 C -0.125 4.125 6 C -0.050 4.050 7 C 0.015 3.985 8 N -0.178 5.178 9 H 0.294 0.706 10 N -0.133 5.133 11 C -0.134 4.134 12 C -0.230 4.230 13 C -0.031 4.031 14 N -0.185 5.185 15 C -0.097 4.097 16 C 0.144 3.856 17 O -0.368 6.368 18 C -0.580 4.580 19 H 0.069 0.931 20 C -0.175 4.175 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.182 1.182 24 H -0.161 1.161 25 H -0.213 1.213 26 C -0.145 4.145 27 C -0.128 4.128 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.213 0.787 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.200 0.800 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.891 -2.658 8.049 25.350 hybrid contribution 1.865 -0.052 -0.403 1.908 sum -22.026 -2.710 7.646 23.472 Atomic orbital electron populations 1.20823 0.88889 1.03751 1.03229 1.20108 0.97585 0.92335 0.99490 1.21474 0.93884 0.98680 0.98796 1.21340 0.94870 0.98123 1.00017 1.21882 1.02049 0.91543 0.96987 1.18031 0.92802 0.89458 1.04737 1.19505 0.96430 0.88535 0.94033 1.46488 1.27762 1.09749 1.33845 0.70641 1.77213 1.03923 1.13226 1.18978 1.23972 0.99293 0.94601 0.95490 1.19934 1.00275 0.96387 1.06356 1.20858 0.96260 0.93124 0.92886 1.68416 1.06898 1.07964 1.35189 1.23933 0.92908 0.97214 0.95681 1.20642 0.93717 0.87232 0.84045 1.86447 1.39488 1.63648 1.47188 1.21627 0.91335 1.50505 0.94561 0.93094 1.25797 0.95951 0.93492 1.02259 1.70014 1.00116 1.50093 1.36639 0.86331 0.78927 0.79646 0.80655 1.18190 1.16145 1.21290 1.24837 0.89986 0.98948 1.00691 1.21222 0.91958 0.98942 1.00678 0.90146 0.90314 0.90942 0.83653 0.84876 0.84397 0.78717 0.90223 0.92619 0.89403 0.90342 0.80001 0.91993 0.90726 0.91551 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.23 0.71 -0.46 16 2 C -0.10 -1.63 5.87 -19.90 -0.12 -1.75 16 3 C -0.11 -1.99 9.69 22.32 0.22 -1.77 16 4 C -0.13 -2.84 10.03 22.23 0.22 -2.62 16 5 C -0.11 -2.87 9.01 22.51 0.20 -2.66 16 6 C -0.05 -1.20 5.69 -20.08 -0.11 -1.32 16 7 C 0.14 3.92 6.66 40.66 0.27 4.19 16 8 N -0.47 -11.55 7.43 -48.61 -0.36 -11.91 16 9 H 0.45 8.14 8.96 -213.35 -1.91 6.23 16 10 N -0.31 -8.94 12.68 -57.24 -0.73 -9.66 16 11 C 0.05 1.48 11.92 85.14 1.01 2.50 16 12 C -0.22 -6.47 5.65 -19.94 -0.11 -6.58 16 13 C 0.10 3.00 4.36 85.56 0.37 3.37 16 14 N -0.46 -16.55 3.86 -915.39 -3.53 -20.09 16 15 C 0.03 1.21 7.33 86.41 0.63 1.84 16 16 C 0.18 8.47 1.05 -10.89 -0.01 8.46 16 17 O -0.56 -26.27 13.32 -148.98 -1.98 -28.26 16 18 C -0.54 -29.62 9.20 25.60 0.24 -29.39 16 19 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 20 C 0.03 1.39 5.47 84.66 0.46 1.85 16 21 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 22 Si 0.92 41.19 24.34 68.60 1.67 42.86 16 23 H -0.26 -10.91 7.06 99.48 0.70 -10.21 16 24 H -0.24 -9.96 5.28 99.48 0.52 -9.44 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.02 -0.62 6.54 86.41 0.57 -0.06 16 27 C -0.11 -2.15 9.43 22.51 0.21 -1.94 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 30 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.14 4.47 5.52 -2.91 -0.02 4.46 16 34 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 36 H 0.06 1.68 7.38 -2.39 -0.02 1.66 16 37 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 38 H 0.08 2.94 7.88 -2.38 -0.02 2.92 16 39 H 0.35 15.81 3.31 -74.06 -0.25 15.57 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.07 3.00 7.43 -2.39 -0.02 2.99 16 42 H 0.07 2.77 6.98 -2.38 -0.02 2.75 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -66.23 349.52 -1.16 -67.39 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -1.29 Total: 41.10 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.77 Total: -26.33 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -4.32 Total: -96.77 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.98 Total: -28.26 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.67 Total: 42.86 kcal Total: -66.23 -1.16 -67.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170088974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.979 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds