Wall clock time and date at job start Fri Apr 10 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52993 * 109.46981 * 2 1 4 4 C 1.52993 * 109.47047 * 239.99550 * 2 1 3 5 5 O 1.45201 * 109.46869 * 119.99638 * 2 1 3 6 6 C 1.34641 * 116.99950 * 60.00024 * 5 2 1 7 7 O 1.21510 * 120.00009 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99703 * 179.97438 * 6 5 2 9 9 C 1.46504 * 119.99442 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.46626 * 179.97438 * 9 8 6 11 11 H 1.08989 * 110.86047 * 302.66566 * 10 9 8 12 12 C 1.54888 * 111.20205 * 178.87228 * 10 9 8 13 13 C 1.51684 * 102.48652 * 266.36096 * 12 10 9 14 14 C 1.47336 * 125.87080 * 164.53991 * 13 12 10 15 15 O 1.21632 * 119.99737 * 359.71463 * 14 13 12 16 16 N 1.34777 * 119.99948 * 179.71850 * 14 13 12 17 17 C 1.36605 * 119.99770 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00118 * 359.97438 * 17 16 14 19 19 C 1.39214 * 119.99962 * 179.97438 * 17 16 14 20 20 N 1.31255 * 120.00333 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00272 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47385 * 119.99921 * 21 19 17 24 24 H 1.48504 * 109.47363 * 239.99971 * 21 19 17 25 25 N 1.29172 * 108.25663 * 344.27872 * 13 12 10 26 26 O 1.41390 * 112.85438 * 359.90613 * 25 13 12 27 27 H 1.09000 * 109.47147 * 300.00241 * 1 2 3 28 28 H 1.09000 * 109.46701 * 60.00384 * 1 2 3 29 29 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47068 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47090 * 299.99378 * 3 2 1 32 32 H 1.08997 * 109.47499 * 59.99391 * 3 2 1 33 33 H 1.08998 * 109.47791 * 300.00036 * 4 2 1 34 34 H 1.09000 * 109.47316 * 60.00443 * 4 2 1 35 35 H 1.09000 * 109.46867 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00424 * 0.02562 * 8 6 5 37 37 H 1.08996 * 109.46647 * 60.00837 * 9 8 6 38 38 H 1.08990 * 109.47436 * 299.99938 * 9 8 6 39 39 H 1.08999 * 110.90522 * 148.08042 * 12 10 9 40 40 H 1.09005 * 110.73633 * 24.56891 * 12 10 9 41 41 H 0.96996 * 119.99871 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00445 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6738 -4.0667 2.5834 10 6 2.2751 -4.6150 3.8791 11 1 3.3603 -4.5140 3.8767 12 6 1.8595 -6.0892 4.1097 13 6 0.6277 -5.9498 4.9837 14 6 -0.3660 -7.0046 5.2498 15 8 -0.2369 -8.1032 4.7439 16 7 -1.4179 -6.7522 6.0537 17 6 -2.3389 -7.7304 6.3008 18 1 -2.2243 -8.7059 5.8516 19 6 -3.4252 -7.4698 7.1315 20 7 -3.5643 -6.2845 7.6778 21 14 -4.6850 -8.8072 7.4689 22 1 -4.3028 -10.0427 6.7390 23 1 -4.7316 -9.0871 8.9264 24 1 -6.0225 -8.3548 7.0088 25 7 0.6026 -4.7490 5.4592 26 8 1.6989 -3.9657 5.0305 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6768 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 2.6276 -2.2367 3.0830 37 1 2.0397 -4.6499 1.7383 38 1 0.5871 -4.1355 2.6291 39 1 2.6440 -6.6375 4.6312 40 1 1.6108 -6.5724 3.1647 41 1 -1.5206 -5.8762 6.4573 42 1 -4.3213 -6.1028 8.2563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276468300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:10 Heat of formation + Delta-G solvation = -125.847173 kcal Electronic energy + Delta-G solvation = -25871.146196 eV Core-core repulsion = 21852.543027 eV Total energy + Delta-G solvation = -4018.603169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94445 -41.44954 -39.89803 -38.45877 -36.24950 -36.13021 -34.96838 -34.12878 -33.34921 -32.14243 -28.37320 -28.29506 -27.77571 -27.63757 -24.53731 -23.50082 -22.85895 -21.10973 -20.78891 -20.05370 -19.34773 -18.21580 -18.01139 -17.55129 -17.24711 -16.99802 -16.55910 -16.08804 -15.82804 -15.73994 -15.66600 -15.32402 -15.11178 -14.59627 -14.46180 -14.03212 -13.85709 -13.66341 -13.35265 -13.11287 -13.06191 -12.98933 -12.92306 -12.86968 -12.78739 -12.56718 -12.48611 -12.33717 -12.10026 -11.88400 -11.68342 -11.40970 -11.17687 -10.83878 -10.64138 -10.35282 -10.25943 -8.66572 -6.11666 0.03839 1.05166 1.40848 1.41773 1.57631 1.70330 1.93677 2.17328 2.24023 2.74465 3.05088 3.11706 3.25141 3.40844 3.57115 3.74754 3.78577 3.79390 3.94451 3.99027 4.38118 4.39641 4.54741 4.59712 4.61228 4.71267 4.74593 4.76165 4.80380 4.84825 4.88043 5.01817 5.18883 5.25935 5.27644 5.34024 5.53969 5.73781 6.11067 6.31858 6.37229 6.87664 7.24665 7.27732 7.77907 8.49661 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002561 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.218680 B =10932.100973 C =11565.252465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.178 4.178 5 O -0.367 6.367 6 C 0.646 3.354 7 O -0.594 6.594 8 N -0.695 5.695 9 C 0.128 3.872 10 C 0.038 3.962 11 H 0.173 0.827 12 C -0.116 4.116 13 C 0.071 3.929 14 C 0.472 3.528 15 O -0.614 6.614 16 N -0.524 5.524 17 C -0.337 4.337 18 H 0.099 0.901 19 C -0.007 4.007 20 N -0.899 5.899 21 Si 1.008 2.992 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.268 1.268 25 N -0.297 5.297 26 O -0.194 6.194 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.420 0.580 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.400 0.600 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 13.351 -12.672 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.235 4.235 5 O -0.281 6.281 6 C 0.399 3.601 7 O -0.486 6.486 8 N -0.355 5.355 9 C 0.004 3.996 10 C -0.021 4.021 11 H 0.190 0.810 12 C -0.156 4.156 13 C -0.122 4.122 14 C 0.259 3.741 15 O -0.501 6.501 16 N -0.158 5.158 17 C -0.468 4.468 18 H 0.117 0.883 19 C -0.211 4.211 20 N -0.537 5.537 21 Si 0.829 3.171 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.193 1.193 25 N -0.043 5.043 26 O -0.214 6.214 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.257 0.743 37 H 0.124 0.876 38 H 0.062 0.938 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.234 0.766 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.714 13.448 -12.623 22.402 hybrid contribution -0.325 -0.445 0.252 0.605 sum 12.389 13.003 -12.372 21.809 Atomic orbital electron populations 1.22501 0.94559 1.03421 1.03533 1.22450 0.94217 0.92974 0.81616 1.21882 1.02634 0.90357 1.04293 1.22461 1.01856 1.02087 0.97139 1.86314 1.71481 1.22742 1.47597 1.18230 0.78611 0.80980 0.82270 1.90911 1.42062 1.71109 1.44472 1.44438 1.55342 1.12231 1.23496 1.21736 0.99496 0.80230 0.98109 1.24277 1.02356 0.90152 0.85276 0.80997 1.22872 0.93602 0.97448 1.01688 1.26106 0.96983 0.91928 0.97148 1.16886 0.83764 0.87127 0.86310 1.90631 1.78077 1.24525 1.56866 1.41969 1.20062 1.14842 1.38902 1.20032 1.03069 0.95097 1.28561 0.88277 1.26456 0.99872 1.00013 0.94715 1.69646 1.31643 1.22569 1.29869 0.84667 0.76670 0.77155 0.78632 1.18716 1.19087 1.19306 1.78621 1.04511 1.04560 1.16618 1.91224 1.41347 1.44122 1.44738 0.92359 0.88846 0.92444 0.90755 0.87855 0.91455 0.92157 0.89039 0.91441 0.74333 0.87610 0.93777 0.84587 0.86096 0.76565 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.37 71.99 0.60 -3.15 16 2 C 0.12 2.33 1.13 -10.80 -0.01 2.32 16 3 C -0.13 -1.60 8.85 71.98 0.64 -0.96 16 4 C -0.18 -3.16 8.37 71.98 0.60 -2.55 16 5 O -0.37 -8.56 9.94 -55.51 -0.55 -9.12 16 6 C 0.65 17.32 8.06 129.79 1.05 18.37 16 7 O -0.59 -19.17 11.88 19.81 0.24 -18.93 16 8 N -0.69 -15.68 5.55 -590.84 -3.28 -18.96 16 9 C 0.13 3.01 5.39 86.38 0.47 3.47 16 10 C 0.04 0.81 3.83 31.24 0.12 0.93 16 11 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 12 C -0.12 -3.02 6.46 30.81 0.20 -2.82 16 13 C 0.07 2.75 7.27 45.66 0.33 3.08 16 14 C 0.47 23.18 7.76 86.64 0.67 23.85 16 15 O -0.61 -32.96 16.53 -4.13 -0.07 -33.03 16 16 N -0.52 -27.82 5.27 -310.13 -1.63 -29.46 16 17 C -0.34 -18.69 9.68 84.18 0.81 -17.87 16 18 H 0.10 5.66 7.15 -2.91 -0.02 5.64 16 19 C -0.01 -0.36 5.50 85.01 0.47 0.11 16 20 N -0.90 -47.96 13.04 21.71 0.28 -47.67 16 21 Si 1.01 40.68 29.55 68.60 2.03 42.71 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 25 N -0.30 -11.51 12.15 -42.41 -0.52 -12.03 16 26 O -0.19 -5.95 12.22 -38.31 -0.47 -6.42 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.42 7.57 8.58 -92.71 -0.80 6.77 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.12 2.95 7.93 -2.38 -0.02 2.93 16 41 H 0.40 21.24 7.57 -92.71 -0.70 20.54 16 42 H 0.29 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -71.01 358.98 1.55 -69.46 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.43 Total: 38.66 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 5.95 Total: 24.77 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -5.14 Total: -108.11 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -0.85 Total: -67.49 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -71.01 1.55 -69.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276468300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.386 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds