Wall clock time and date at job start Fri Apr 10 2020 18:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47458 * 180.02562 * 3 2 1 5 5 N 1.30296 * 126.34228 * 89.97387 * 4 3 2 6 6 N 1.28527 * 110.07740 * 179.97438 * 5 4 3 7 7 C 1.31284 * 109.86000 * 0.02562 * 6 5 4 8 8 S 1.76192 * 126.48400 * 180.02562 * 7 6 5 9 9 C 1.81001 * 100.00313 * 0.02562 * 8 7 6 10 10 C 1.50697 * 109.47322 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99998 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99887 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00053 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47077 * 34.99783 * 13 12 10 15 15 C 1.53008 * 109.47016 * 275.00255 * 13 12 10 16 16 C 1.50695 * 109.47337 * 155.00261 * 13 12 10 17 17 H 1.07998 * 120.00418 * 5.62270 * 16 13 12 18 18 C 1.37879 * 120.00201 * 185.62926 * 16 13 12 19 19 N 1.31514 * 120.00393 * 197.18198 * 18 16 13 20 20 Si 1.86804 * 119.99786 * 17.45333 * 18 16 13 21 21 H 1.48502 * 109.47029 * 179.72709 * 20 18 16 22 22 H 1.48503 * 109.46948 * 299.72609 * 20 18 16 23 23 H 1.48492 * 109.47033 * 59.72641 * 20 18 16 24 24 N 1.36539 * 107.02965 * 0.25689 * 7 6 5 25 25 N 1.36598 * 127.14115 * 179.73700 * 24 7 6 26 26 H 1.08997 * 109.47561 * 60.00025 * 1 2 3 27 27 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47600 * 299.99733 * 1 2 3 29 29 H 1.08999 * 109.47600 * 240.00267 * 2 1 3 30 30 H 1.09003 * 109.47372 * 120.00374 * 2 1 3 31 31 H 1.09001 * 109.46778 * 60.00215 * 3 2 1 32 32 H 1.08996 * 109.47579 * 300.00197 * 3 2 1 33 33 H 1.08996 * 109.47289 * 59.99947 * 9 8 7 34 34 H 1.09000 * 109.46896 * 300.00092 * 9 8 7 35 35 H 0.96996 * 120.00288 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46665 * 306.33574 * 15 13 12 37 37 H 1.08994 * 109.46957 * 66.33318 * 15 13 12 38 38 H 1.09002 * 109.47065 * 186.34089 * 15 13 12 39 39 H 0.97001 * 119.99221 * 355.17115 * 19 18 16 40 40 H 1.00898 * 110.99763 * 90.02796 * 25 24 7 41 41 H 1.00896 * 111.00157 * 213.98020 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4423 -1.0505 6 7 5.5526 1.4430 -0.6910 7 6 5.6355 1.4432 0.6192 8 16 7.1154 1.4448 1.5753 9 6 8.3468 1.4466 0.2487 10 6 9.7298 1.4476 0.8471 11 8 9.8694 1.4465 2.0518 12 7 10.8118 1.4485 0.0434 13 6 12.1564 1.4488 0.6251 14 1 12.1558 0.8589 1.5416 15 6 12.5738 2.8859 0.9437 16 6 13.1289 0.8493 -0.3576 17 1 12.7992 0.5865 -1.3519 18 6 14.4399 0.6363 0.0126 19 7 15.3594 0.4402 -0.9070 20 14 14.9087 0.6187 1.8208 21 1 16.3661 0.3653 1.9518 22 1 14.5777 1.9316 2.4307 23 1 14.1551 -0.4547 2.5171 24 7 4.3578 1.4368 1.1007 25 7 3.9701 1.4296 2.4105 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 8.2163 2.3366 -0.3669 34 1 8.2184 0.5567 -0.3674 35 1 10.7002 1.4489 -0.9201 36 1 12.4663 3.5018 0.0509 37 1 11.9390 3.2813 1.7366 38 1 13.6136 2.8982 1.2706 39 1 15.1052 0.3755 -1.8409 40 1 3.8638 2.3697 2.7612 41 1 3.1202 0.8997 2.5331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291568286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:20 Heat of formation + Delta-G solvation = 49.937491 kcal Electronic energy + Delta-G solvation = -22856.484968 eV Core-core repulsion = 19320.550016 eV Total energy + Delta-G solvation = -3535.934952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.25100 -39.10526 -36.93362 -35.72276 -35.05586 -32.54443 -31.40389 -30.68986 -30.07756 -28.61199 -27.40271 -24.83584 -23.11811 -22.75886 -21.54551 -21.20003 -19.70044 -18.90471 -17.80642 -17.76349 -17.13562 -16.37337 -15.69348 -15.61862 -15.35705 -15.27950 -14.92592 -14.00253 -13.81020 -13.78920 -13.06870 -12.92429 -12.80966 -12.64120 -12.43944 -12.26619 -12.11168 -11.91790 -11.70246 -11.57243 -11.40890 -11.37327 -11.02533 -10.49349 -10.45185 -10.18130 -10.05863 -9.89787 -9.82540 -9.45734 -9.10403 -8.34211 -8.29204 -7.68661 -6.59631 -4.23141 0.85987 1.27191 1.87374 1.97592 2.45965 3.03474 3.38362 3.44900 3.55209 3.59216 3.83912 4.02645 4.35076 4.37619 4.41225 4.64676 4.85592 4.97105 5.05101 5.10455 5.15051 5.17047 5.17547 5.28066 5.40968 5.45508 5.54541 5.62765 5.69790 5.98751 6.36263 6.52353 6.64363 6.91600 7.00346 7.22059 7.31843 7.59828 8.21577 8.30692 8.34547 8.63233 8.84896 9.45862 10.81410 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.002366 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.957426 B =11829.817365 C =12168.183542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.031 4.031 4 C 0.145 3.855 5 N -0.268 5.268 6 N -0.294 5.294 7 C 0.174 3.826 8 S 0.109 5.891 9 C -0.154 4.154 10 C 0.521 3.479 11 O -0.544 6.544 12 N -0.692 5.692 13 C 0.242 3.758 14 H 0.043 0.957 15 C -0.161 4.161 16 C -0.619 4.619 17 H 0.063 0.937 18 C 0.039 3.961 19 N -0.896 5.896 20 Si 1.042 2.958 21 H -0.283 1.283 22 H -0.271 1.271 23 H -0.279 1.279 24 N -0.309 5.309 25 N -0.583 5.583 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.397 0.603 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.269 0.731 40 H 0.366 0.634 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.572 2.796 4.789 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.071 4.071 4 C -0.126 4.126 5 N -0.108 5.108 6 N -0.139 5.139 7 C -0.200 4.200 8 S 0.336 5.664 9 C -0.307 4.307 10 C 0.304 3.696 11 O -0.424 6.424 12 N -0.340 5.340 13 C 0.139 3.861 14 H 0.061 0.939 15 C -0.220 4.220 16 C -0.656 4.656 17 H 0.081 0.919 18 C -0.168 4.168 19 N -0.529 5.529 20 Si 0.870 3.130 21 H -0.209 1.209 22 H -0.197 1.197 23 H -0.205 1.205 24 N -0.092 5.092 25 N -0.215 5.215 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.231 0.769 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.185 0.815 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.840 2.309 6.527 27.719 hybrid contribution -2.963 0.579 -1.925 3.580 sum -29.803 2.889 4.602 30.294 Atomic orbital electron populations 1.21761 0.94564 1.02408 1.02155 1.21552 0.96479 0.94760 1.03259 1.20108 0.83132 0.99198 1.04659 1.25489 0.96790 1.07169 0.83180 1.73935 0.96558 1.17006 1.23318 1.74863 1.11644 1.21576 1.05844 1.27361 0.91040 1.06353 0.95284 1.86500 0.85637 1.91459 1.02792 1.23872 0.95558 1.09137 1.02100 1.19496 0.84999 0.77735 0.87379 1.90694 1.86325 1.51248 1.14102 1.46210 1.06473 1.71580 1.09691 1.19086 0.77854 0.93469 0.95734 0.93906 1.22511 1.01134 0.98916 0.99431 1.22066 0.96165 1.47588 0.99822 0.91931 1.25702 0.92027 0.92958 1.06137 1.70881 1.34365 1.45209 1.02456 0.84076 0.76373 0.77817 0.74759 1.20872 1.19720 1.20547 1.44987 1.05174 1.56927 1.02144 1.59598 1.42961 1.21723 0.97177 0.92147 0.92057 0.92576 0.90632 0.91972 0.90484 0.87694 0.86092 0.85969 0.76935 0.93613 0.95063 0.91771 0.92067 0.81547 0.80751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 37.15 0.37 -0.17 16 2 C -0.12 -0.64 5.92 -26.74 -0.16 -0.79 16 3 C -0.03 -0.18 5.52 -27.88 -0.15 -0.33 16 4 C 0.14 1.51 7.38 -153.99 -1.14 0.38 16 5 N -0.27 -3.82 12.17 33.00 0.40 -3.42 16 6 N -0.29 -4.53 11.60 30.68 0.36 -4.17 16 7 C 0.17 2.38 8.20 -88.34 -0.72 1.66 16 8 S 0.11 1.55 21.40 -107.50 -2.30 -0.75 16 9 C -0.15 -2.28 5.72 36.00 0.21 -2.07 16 10 C 0.52 9.82 7.81 -10.99 -0.09 9.74 16 11 O -0.54 -11.97 15.52 5.56 0.09 -11.89 16 12 N -0.69 -13.85 5.07 -54.93 -0.28 -14.13 16 13 C 0.24 5.77 2.14 -69.08 -0.15 5.62 16 14 H 0.04 1.10 6.23 -51.93 -0.32 0.78 16 15 C -0.16 -3.62 9.16 37.16 0.34 -3.28 16 16 C -0.62 -16.66 9.00 -34.44 -0.31 -16.97 16 17 H 0.06 1.76 7.96 -52.49 -0.42 1.34 16 18 C 0.04 1.08 5.29 -17.82 -0.09 0.99 16 19 N -0.90 -26.63 13.70 55.43 0.76 -25.87 16 20 Si 1.04 25.00 26.29 -169.99 -4.47 20.53 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.07 5.76 56.52 0.33 -5.74 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 N -0.31 -3.26 3.81 -9.93 -0.04 -3.30 16 25 N -0.58 -3.91 10.41 60.35 0.63 -3.28 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.12 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.40 7.06 8.53 -40.82 -0.35 6.71 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.48 4.88 -51.93 -0.25 1.22 16 39 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 40 H 0.37 1.66 9.21 -181.37 -1.67 -0.01 16 41 H 0.37 1.41 8.85 -181.37 -1.61 -0.19 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -34.61 359.94 -9.82 -44.43 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.50 Total: 1.65 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.90 Total: -5.23 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 1.83 Total: -54.17 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.47 Total: 20.53 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.30 Total: -0.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.61 -9.82 -44.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291568286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.368 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds