Wall clock time and date at job start Fri Apr 10 2020 18:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.50699 * 109.47458 * 180.02562 * 3 2 1 5 5 N 1.30296 * 126.34228 * 89.97387 * 4 3 2 6 6 N 1.28527 * 110.07740 * 179.97438 * 5 4 3 7 7 C 1.31284 * 109.86000 * 0.02562 * 6 5 4 8 8 S 1.76192 * 126.48400 * 180.02562 * 7 6 5 9 9 C 1.81001 * 100.00313 * 0.02562 * 8 7 6 10 10 C 1.50697 * 109.47322 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99998 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99887 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00053 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47077 * 34.99783 * 13 12 10 15 15 C 1.53008 * 109.47016 * 275.00255 * 13 12 10 16 16 C 1.50695 * 109.47337 * 155.00261 * 13 12 10 17 17 H 1.07998 * 120.00418 * 5.62270 * 16 13 12 18 18 C 1.37879 * 120.00201 * 185.62926 * 16 13 12 19 19 N 1.31514 * 120.00393 * 197.18198 * 18 16 13 20 20 Si 1.86804 * 119.99786 * 17.45333 * 18 16 13 21 21 H 1.48502 * 109.47029 * 179.72709 * 20 18 16 22 22 H 1.48503 * 109.46948 * 299.72609 * 20 18 16 23 23 H 1.48492 * 109.47033 * 59.72641 * 20 18 16 24 24 N 1.36539 * 107.02965 * 0.25689 * 7 6 5 25 25 N 1.36598 * 127.14115 * 179.73700 * 24 7 6 26 26 H 1.08997 * 109.47561 * 60.00025 * 1 2 3 27 27 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47600 * 299.99733 * 1 2 3 29 29 H 1.08999 * 109.47600 * 240.00267 * 2 1 3 30 30 H 1.09003 * 109.47372 * 120.00374 * 2 1 3 31 31 H 1.09001 * 109.46778 * 60.00215 * 3 2 1 32 32 H 1.08996 * 109.47579 * 300.00197 * 3 2 1 33 33 H 1.08996 * 109.47289 * 59.99947 * 9 8 7 34 34 H 1.09000 * 109.46896 * 300.00092 * 9 8 7 35 35 H 0.96996 * 120.00288 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46665 * 306.33574 * 15 13 12 37 37 H 1.08994 * 109.46957 * 66.33318 * 15 13 12 38 38 H 1.09002 * 109.47065 * 186.34089 * 15 13 12 39 39 H 0.97001 * 119.99221 * 355.17115 * 19 18 16 40 40 H 1.00898 * 110.99763 * 90.02796 * 25 24 7 41 41 H 1.00896 * 111.00157 * 213.98020 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4423 -1.0505 6 7 5.5526 1.4430 -0.6910 7 6 5.6355 1.4432 0.6192 8 16 7.1154 1.4448 1.5753 9 6 8.3468 1.4466 0.2487 10 6 9.7298 1.4476 0.8471 11 8 9.8694 1.4465 2.0518 12 7 10.8118 1.4485 0.0434 13 6 12.1564 1.4488 0.6251 14 1 12.1558 0.8589 1.5416 15 6 12.5738 2.8859 0.9437 16 6 13.1289 0.8493 -0.3576 17 1 12.7992 0.5865 -1.3519 18 6 14.4399 0.6363 0.0126 19 7 15.3594 0.4402 -0.9070 20 14 14.9087 0.6187 1.8208 21 1 16.3661 0.3653 1.9518 22 1 14.5777 1.9316 2.4307 23 1 14.1551 -0.4547 2.5171 24 7 4.3578 1.4368 1.1007 25 7 3.9701 1.4296 2.4105 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 8.2163 2.3366 -0.3669 34 1 8.2184 0.5567 -0.3674 35 1 10.7002 1.4489 -0.9201 36 1 12.4663 3.5018 0.0509 37 1 11.9390 3.2813 1.7366 38 1 13.6136 2.8982 1.2706 39 1 15.1052 0.3755 -1.8409 40 1 3.8638 2.3697 2.7612 41 1 3.1202 0.8997 2.5331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291568286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:20 Heat of formation + Delta-G solvation = 25.352447 kcal Electronic energy + Delta-G solvation = -22857.551055 eV Core-core repulsion = 19320.550016 eV Total energy + Delta-G solvation = -3537.001039 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.14980 -40.71518 -37.68608 -36.89291 -36.20487 -34.52088 -32.53806 -31.98587 -30.82314 -30.08615 -28.03023 -26.86790 -24.06565 -23.40497 -22.97406 -22.08923 -21.38825 -20.05405 -19.47323 -18.46925 -18.22957 -17.88792 -17.04812 -16.63385 -16.33623 -16.04685 -15.87538 -15.55999 -15.17127 -14.80545 -14.49496 -14.41053 -14.25833 -13.91340 -13.48903 -13.31262 -13.26639 -13.16079 -12.90567 -12.41109 -12.35711 -12.27838 -12.02678 -11.95725 -11.72308 -11.67174 -11.45633 -11.18893 -11.08539 -11.04734 -10.60555 -10.47117 -10.02000 -8.81138 -8.75406 -6.44995 -0.19063 0.40026 0.85325 1.10254 1.46843 1.50890 1.52206 1.53546 1.71631 2.33560 2.42973 2.97302 3.01332 3.44234 3.65658 3.93550 3.94330 3.94782 4.03634 4.23915 4.26792 4.46496 4.49672 4.57814 4.71517 4.73074 4.76957 4.77451 4.85928 5.07414 5.15712 5.20927 5.39170 5.43834 5.53703 5.62438 5.62717 5.99826 6.32988 6.50605 6.66644 7.18976 7.32692 7.36776 8.59242 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.002366 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.957426 B =11829.817365 C =12168.183542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.030 4.030 4 C 0.165 3.835 5 N -0.313 5.313 6 N -0.322 5.322 7 C 0.160 3.840 8 S 0.105 5.895 9 C -0.144 4.144 10 C 0.525 3.475 11 O -0.574 6.574 12 N -0.694 5.694 13 C 0.244 3.756 14 H 0.028 0.972 15 C -0.155 4.155 16 C -0.615 4.615 17 H 0.040 0.960 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 1.074 2.926 21 H -0.283 1.283 22 H -0.245 1.245 23 H -0.272 1.272 24 N -0.305 5.305 25 N -0.583 5.583 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.407 0.593 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.258 0.742 40 H 0.381 0.619 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.298 3.553 6.448 33.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.069 4.069 4 C -0.107 4.107 5 N -0.153 5.153 6 N -0.167 5.167 7 C -0.216 4.216 8 S 0.332 5.668 9 C -0.295 4.295 10 C 0.310 3.690 11 O -0.455 6.455 12 N -0.343 5.343 13 C 0.139 3.861 14 H 0.046 0.954 15 C -0.213 4.213 16 C -0.653 4.653 17 H 0.059 0.941 18 C -0.208 4.208 19 N -0.561 5.561 20 Si 0.896 3.104 21 H -0.208 1.208 22 H -0.169 1.169 23 H -0.198 1.198 24 N -0.086 5.086 25 N -0.220 5.220 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.243 0.757 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.202 0.798 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -29.625 3.079 8.167 30.884 hybrid contribution -2.301 0.309 -2.458 3.381 sum -31.926 3.388 5.709 32.609 Atomic orbital electron populations 1.21733 0.92974 1.02708 1.03052 1.21501 0.97719 0.94052 1.02349 1.20394 0.79884 1.00015 1.06635 1.26311 0.98279 1.03817 0.82314 1.73863 0.96672 1.19554 1.25228 1.74753 1.12734 1.22366 1.06876 1.27161 0.91839 1.07526 0.95077 1.86426 0.85895 1.92079 1.02425 1.23685 0.93095 1.10447 1.02320 1.19961 0.85987 0.76276 0.86800 1.90677 1.87020 1.52309 1.15496 1.46031 1.05702 1.72114 1.10425 1.18816 0.79118 0.93924 0.94214 0.95394 1.22389 1.00899 0.97834 1.00186 1.22237 0.96861 1.46702 0.99450 0.94132 1.26885 0.92557 0.92414 1.08923 1.70987 1.35142 1.47799 1.02171 0.83679 0.76235 0.79389 0.71117 1.20847 1.16903 1.19793 1.44995 1.04196 1.55811 1.03591 1.59654 1.44244 1.23238 0.94835 0.92012 0.92108 0.90921 0.92883 0.91651 0.87002 0.87194 0.84414 0.84990 0.75732 0.92871 0.93860 0.92390 0.93308 0.79829 0.78719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 71.98 0.71 0.05 16 2 C -0.12 -0.97 5.92 30.59 0.18 -0.79 16 3 C -0.03 -0.26 5.52 29.85 0.16 -0.10 16 4 C 0.16 3.15 7.38 137.63 1.02 4.17 16 5 N -0.31 -8.74 12.17 -49.52 -0.60 -9.34 16 6 N -0.32 -9.77 11.60 -56.86 -0.66 -10.43 16 7 C 0.16 4.21 8.20 179.55 1.47 5.68 16 8 S 0.10 2.87 21.40 -56.49 -1.21 1.66 16 9 C -0.14 -4.08 5.72 71.23 0.41 -3.67 16 10 C 0.53 19.26 7.81 87.66 0.68 19.95 16 11 O -0.57 -24.69 15.52 -3.03 -0.05 -24.73 16 12 N -0.69 -27.28 5.07 -446.10 -2.26 -29.54 16 13 C 0.24 11.47 2.14 44.25 0.09 11.57 16 14 H 0.03 1.42 6.23 -2.39 -0.01 1.41 16 15 C -0.15 -6.70 9.16 71.98 0.66 -6.04 16 16 C -0.61 -33.32 9.00 25.60 0.23 -33.09 16 17 H 0.04 2.33 7.96 -2.91 -0.02 2.30 16 18 C -0.01 -0.40 5.29 84.66 0.45 0.05 16 19 N -0.93 -55.96 13.70 21.45 0.29 -55.66 16 20 Si 1.07 49.85 26.29 68.60 1.80 51.65 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.24 -10.26 5.76 99.48 0.57 -9.69 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 N -0.30 -5.83 3.81 -185.33 -0.71 -6.54 16 25 N -0.58 -6.22 10.41 37.02 0.39 -5.84 16 26 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.14 3.46 8.14 -2.40 -0.02 3.44 16 34 H 0.13 3.51 8.14 -2.40 -0.02 3.49 16 35 H 0.41 14.27 8.53 -92.71 -0.79 13.48 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.56 4.88 -2.39 -0.01 2.55 16 39 H 0.26 15.63 8.73 -92.71 -0.81 14.82 16 40 H 0.38 2.29 9.21 -210.56 -1.94 0.35 16 41 H 0.39 1.63 8.85 -210.56 -1.86 -0.23 16 Total: -1.00 -75.54 359.94 -0.61 -76.15 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -3.68 Total: 14.85 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 6.07 Total: -2.22 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -3.55 Total: -117.36 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 1.80 Total: 51.65 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.21 Total: 1.66 kcal Total: -75.54 -0.61 -76.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291568286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.502 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds