Wall clock time and date at job start Fri Apr 10 2020 18:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 O 1.42902 * 109.47077 * 240.00027 * 2 1 3 5 5 C 1.42907 * 114.00044 * 89.99993 * 4 2 1 6 6 C 1.52994 * 109.47071 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.48402 * 54.98135 * 6 5 4 8 8 C 1.53100 * 109.47984 * 175.00172 * 6 5 4 9 9 C 1.53169 * 109.16482 * 177.59253 * 8 6 5 10 10 C 1.53181 * 109.03673 * 303.01862 * 9 8 6 11 11 C 1.53098 * 109.16286 * 56.98118 * 10 9 8 12 12 O 1.42898 * 109.48249 * 294.94240 * 6 5 4 13 13 C 1.50694 * 109.47370 * 120.00149 * 2 1 3 14 14 O 1.21285 * 120.00162 * 119.99555 * 13 2 1 15 15 N 1.34777 * 120.00273 * 300.00476 * 13 2 1 16 16 C 1.47582 * 134.49459 * 180.02562 * 15 13 2 17 17 C 1.53947 * 86.11407 * 155.35159 * 16 15 13 18 18 O 1.42902 * 113.74162 * 269.15079 * 17 16 15 19 19 C 1.50708 * 113.74049 * 137.95124 * 17 16 15 20 20 H 1.07991 * 119.99789 * 0.02562 * 19 17 16 21 21 C 1.37877 * 120.00008 * 179.97438 * 19 17 16 22 22 N 1.31514 * 120.00089 * 180.02562 * 21 19 17 23 23 Si 1.86798 * 119.99938 * 0.02562 * 21 19 17 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.47580 * 134.48919 * 359.97438 * 15 13 2 28 28 H 1.08999 * 109.47330 * 59.99763 * 1 2 3 29 29 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46725 * 299.99790 * 1 2 3 31 31 H 1.09007 * 109.46874 * 300.00555 * 5 4 2 32 32 H 1.09005 * 109.47015 * 60.00006 * 5 4 2 33 33 H 1.09003 * 109.51721 * 297.49631 * 8 6 5 34 34 H 1.08998 * 109.51935 * 57.62019 * 8 6 5 35 35 H 1.09004 * 109.54378 * 62.88525 * 9 8 6 36 36 H 1.08996 * 109.54795 * 183.06174 * 9 8 6 37 37 H 1.08994 * 109.52421 * 176.88714 * 10 9 8 38 38 H 1.09000 * 109.52016 * 297.01313 * 10 9 8 39 39 H 1.08995 * 109.47932 * 62.37625 * 11 10 9 40 40 H 1.08994 * 109.48028 * 182.41102 * 11 10 9 41 41 H 1.08997 * 113.76939 * 41.05225 * 16 15 13 42 42 H 1.08998 * 113.86978 * 269.66537 * 16 15 13 43 43 H 0.96700 * 113.99835 * 178.07757 * 18 17 16 44 44 H 0.96997 * 119.99848 * 180.02562 * 22 21 19 45 45 H 1.08998 * 113.76926 * 90.34678 * 27 15 13 46 46 H 1.09000 * 113.77577 * 318.95158 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2942 6 6 2.7078 -0.6407 -3.4792 7 1 2.0194 -1.4635 -3.6716 8 6 2.7967 0.2513 -4.7203 9 6 3.3624 -0.5647 -5.8866 10 6 4.7250 -1.1358 -5.4824 11 6 4.5617 -1.9743 -4.2119 12 8 4.0028 -1.1635 -3.1763 13 6 2.0323 -0.7104 1.2304 14 8 2.7296 -1.6965 1.1191 15 7 1.7067 -0.2501 2.4545 16 6 2.0094 -0.6772 3.8344 17 6 1.7568 0.7884 4.2319 18 8 2.9310 1.6024 4.2053 19 6 0.9627 0.9441 5.5034 20 1 0.6296 0.0696 6.0423 21 6 0.6626 2.2029 5.9790 22 7 -0.0298 2.3387 7.0888 23 14 1.2396 3.7155 5.0471 24 1 2.5805 4.1197 5.5411 25 1 0.2775 4.8262 5.2619 26 1 1.3195 3.4033 3.5975 27 6 0.9051 0.8841 2.9534 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.2537 0.6548 -2.5588 32 1 2.9320 0.9514 -2.0451 33 1 1.8025 0.6156 -4.9790 34 1 3.4525 1.0973 -4.5145 35 1 2.6808 -1.3814 -6.1246 36 1 3.4793 0.0784 -6.7588 37 1 5.1099 -1.7634 -6.2860 38 1 5.4210 -0.3184 -5.2935 39 1 3.8976 -2.8147 -4.4139 40 1 5.5354 -2.3481 -3.8954 41 1 3.0405 -1.0000 3.9782 42 1 1.2831 -1.3763 4.2490 43 1 2.7715 2.5302 4.4259 44 1 -0.2412 3.2243 7.4232 45 1 -0.1470 0.6445 3.1074 46 1 1.0548 1.8077 2.3942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331895928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:42 Heat of formation + Delta-G solvation = -132.084297 kcal Electronic energy + Delta-G solvation = -26986.170406 eV Core-core repulsion = 23070.837119 eV Total energy + Delta-G solvation = -3915.333288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.01895 -39.62211 -38.26195 -36.85000 -34.49971 -33.87452 -32.70403 -32.56352 -31.18630 -28.61842 -27.22796 -25.77964 -25.42461 -24.45375 -23.43671 -22.32985 -20.59740 -20.12996 -18.72352 -17.45119 -17.10757 -16.76683 -16.65725 -16.28173 -16.05241 -15.46303 -15.17897 -14.82100 -14.67657 -14.44621 -13.95287 -13.69330 -13.62120 -13.18647 -12.94831 -12.94137 -12.77312 -12.51449 -12.44676 -12.36545 -12.02166 -11.95811 -11.57263 -11.39491 -11.30261 -11.24363 -10.97854 -10.89311 -10.61700 -10.51952 -10.15191 -9.88637 -9.62611 -9.56443 -9.23077 -8.97073 -8.66717 -8.01803 -6.44342 -4.50287 2.93922 2.96377 2.98512 3.11211 3.14262 3.56545 3.81838 4.00154 4.45136 4.50407 4.54666 4.61932 4.73057 4.75218 4.88827 4.95570 5.04600 5.06298 5.12152 5.16023 5.21464 5.29668 5.41834 5.46166 5.52040 5.55260 5.57191 5.64770 5.68021 5.71797 5.78404 5.95353 6.00739 6.03182 6.13670 6.21064 6.35712 6.42314 6.58960 7.05700 7.15720 7.19333 8.00382 8.28365 8.48565 8.60084 8.67573 9.13153 10.67882 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.002810 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.455771 B = 9962.444887 C =10228.516379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.082 0.918 4 O -0.348 6.348 5 C 0.066 3.934 6 C 0.095 3.905 7 H 0.066 0.934 8 C -0.149 4.149 9 C -0.120 4.120 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.365 6.365 13 C 0.532 3.468 14 O -0.535 6.535 15 N -0.634 5.634 16 C 0.130 3.870 17 C 0.195 3.805 18 O -0.552 6.552 19 C -0.535 4.535 20 H 0.092 0.908 21 C 0.080 3.920 22 N -0.876 5.876 23 Si 0.859 3.141 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.258 1.258 27 C 0.061 3.939 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.351 0.649 44 H 0.271 0.729 45 H 0.096 0.904 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -0.895 -23.164 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 H 0.100 0.900 4 O -0.266 6.266 5 C -0.011 4.011 6 C 0.037 3.963 7 H 0.084 0.916 8 C -0.187 4.187 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.017 4.017 12 O -0.283 6.283 13 C 0.320 3.680 14 O -0.412 6.412 15 N -0.370 5.370 16 C 0.008 3.992 17 C 0.154 3.846 18 O -0.363 6.363 19 C -0.573 4.573 20 H 0.110 0.890 21 C -0.126 4.126 22 N -0.511 5.511 23 Si 0.688 3.312 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.183 1.183 27 C -0.062 4.062 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.203 0.797 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.532 -2.089 -23.280 23.511 hybrid contribution -0.302 1.766 -0.580 1.883 sum 2.231 -0.324 -23.860 23.966 Atomic orbital electron populations 1.22258 0.93768 1.03677 1.03127 1.21794 0.94840 0.96261 0.85588 0.90024 1.88077 1.86571 1.33403 1.18584 1.22596 0.99231 0.92964 0.86267 1.22030 0.85866 0.95808 0.92644 0.91562 1.22148 1.02288 0.99216 0.95038 1.21558 0.96760 0.99771 0.97706 1.22225 0.97879 1.00912 0.98566 1.22569 0.99101 0.92516 0.87559 1.88086 1.31837 1.67641 1.40779 1.19835 0.80922 0.84317 0.82911 1.90679 1.38361 1.26285 1.85869 1.50033 1.51288 1.31278 1.04400 1.23288 1.01524 0.97239 0.77127 1.20560 0.83120 0.88455 0.92467 1.86493 1.34956 1.22270 1.92598 1.21232 1.34121 0.95142 1.06800 0.89000 1.25011 0.94123 0.98862 0.94578 1.69855 1.37042 1.24109 1.20117 0.87332 0.79277 0.83661 0.80930 1.19277 1.21019 1.18313 1.24636 0.97606 0.87943 0.95983 0.91688 0.91210 0.90398 0.91801 0.92368 0.90612 0.90727 0.91704 0.91309 0.90926 0.91012 0.93228 0.88798 0.90565 0.88703 0.79713 0.91884 0.88583 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.40 37.16 0.35 -1.87 16 2 C 0.08 1.23 2.97 -27.89 -0.08 1.15 16 3 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 4 O -0.35 -5.79 9.49 -59.70 -0.57 -6.36 16 5 C 0.07 0.81 5.41 37.15 0.20 1.01 16 6 C 0.09 1.07 2.93 -26.68 -0.08 0.99 16 7 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 8 C -0.15 -1.21 5.42 -26.59 -0.14 -1.35 16 9 C -0.12 -0.85 6.03 -26.55 -0.16 -1.01 16 10 C -0.16 -1.21 6.14 -26.59 -0.16 -1.37 16 11 C 0.06 0.59 6.84 37.21 0.25 0.85 16 12 O -0.36 -5.05 10.37 -40.01 -0.41 -5.46 16 13 C 0.53 10.90 7.46 -10.99 -0.08 10.81 16 14 O -0.54 -12.97 17.23 -14.36 -0.25 -13.22 16 15 N -0.63 -12.78 3.57 -178.35 -0.64 -13.41 16 16 C 0.13 2.72 8.23 -2.97 -0.02 2.70 16 17 C 0.19 4.38 1.06 -90.86 -0.10 4.28 16 18 O -0.55 -12.90 13.32 -35.23 -0.47 -13.37 16 19 C -0.54 -13.56 9.20 -34.44 -0.32 -13.87 16 20 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 21 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 22 N -0.88 -24.13 13.96 55.43 0.77 -23.36 16 23 Si 0.86 18.46 24.34 -169.99 -4.14 14.33 16 24 H -0.27 -5.64 7.06 56.52 0.40 -5.25 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.26 -5.10 5.28 56.52 0.30 -4.80 16 27 C 0.06 1.19 5.47 -2.99 -0.02 1.17 16 28 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.00 6.13 -51.93 -0.32 0.68 16 31 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.10 1.84 8.09 -51.93 -0.42 1.42 16 43 H 0.35 7.76 3.31 45.56 0.15 7.91 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.10 1.73 7.92 -51.93 -0.41 1.32 16 46 H 0.07 1.22 6.98 -51.93 -0.36 0.86 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -32.34 363.72 -7.99 -40.33 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.32 Total: 9.61 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.46 Total: 5.43 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.14 Total: -36.77 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.70 Total: -38.41 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.14 Total: 14.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.34 -7.99 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331895928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.754 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds