Wall clock time and date at job start Fri Apr 10 2020 18:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81396 * 102.99999 * 2 1 4 4 H 1.09001 * 110.36948 * 307.18542 * 3 2 1 5 5 C 1.54381 * 110.32592 * 69.35620 * 3 2 1 6 6 N 1.48562 * 104.59549 * 142.75058 * 5 3 2 7 7 C 1.46899 * 111.00135 * 200.96527 * 6 5 3 8 8 C 1.50699 * 109.47254 * 305.41951 * 7 6 5 9 9 O 1.21293 * 119.99476 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00108 * 180.02562 * 8 7 6 11 11 C 1.37102 * 119.99823 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00106 * 359.97438 * 11 10 8 13 13 C 1.38950 * 119.99972 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00017 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00134 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46953 * 90.00027 * 15 13 11 17 17 H 1.48496 * 109.47360 * 209.99989 * 15 13 11 18 18 H 1.48496 * 109.47394 * 330.00233 * 15 13 11 19 19 C 1.48563 * 104.21852 * 320.52021 * 6 5 3 20 20 C 1.54255 * 110.32861 * 184.99898 * 3 2 1 21 21 H 1.08997 * 110.41118 * 122.15986 * 20 3 2 22 22 N 1.46907 * 110.31896 * 359.97438 * 20 3 2 23 23 C 1.47892 * 111.01311 * 172.29149 * 22 20 3 24 24 C 1.54903 * 104.77080 * 146.33132 * 23 22 20 25 25 C 1.55138 * 101.69331 * 322.97949 * 24 23 22 26 26 C 1.47444 * 111.00121 * 293.16765 * 22 20 3 27 27 H 1.08998 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47373 * 300.00006 * 1 2 3 29 29 H 1.09000 * 109.47025 * 60.00649 * 1 2 3 30 30 H 1.09006 * 110.40822 * 23.97485 * 5 3 2 31 31 H 1.08992 * 110.41632 * 261.53372 * 5 3 2 32 32 H 1.09007 * 109.47328 * 65.42169 * 7 6 5 33 33 H 1.09000 * 109.47381 * 185.41632 * 7 6 5 34 34 H 0.96995 * 119.99854 * 0.02562 * 10 8 7 35 35 H 0.96999 * 120.00439 * 180.02562 * 14 13 11 36 36 H 1.09005 * 110.41440 * 280.70093 * 19 6 5 37 37 H 1.09010 * 110.50816 * 158.31379 * 19 6 5 38 38 H 1.08995 * 110.35684 * 27.52539 * 23 22 20 39 39 H 1.08999 * 110.40790 * 265.16744 * 23 22 20 40 40 H 1.09006 * 110.99040 * 204.86923 * 24 23 22 41 41 H 1.08999 * 110.99472 * 81.09011 * 24 23 22 42 42 H 1.09000 * 110.70805 * 154.01647 * 25 24 23 43 43 H 1.08999 * 110.70493 * 277.08692 * 25 24 23 44 44 H 1.09004 * 109.88854 * 117.33549 * 26 22 20 45 45 H 1.09002 * 110.02054 * 356.23139 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7057 2.2761 -0.8141 5 6 1.8454 2.4048 1.3547 6 7 2.9255 3.3903 1.6180 7 6 3.0010 3.7192 3.0478 8 6 1.6503 4.1836 3.5284 9 8 0.7168 4.2359 2.7557 10 7 1.4800 4.5418 4.8164 11 6 0.2513 4.9648 5.2535 12 1 -0.5800 5.0114 4.5656 13 6 0.0757 5.3346 6.5814 14 7 1.0875 5.2794 7.4181 15 14 -1.5981 5.9117 7.1767 16 1 -2.3818 4.7452 7.6570 17 1 -1.4212 6.8805 8.2881 18 1 -2.3221 6.5678 6.0585 19 6 4.1630 2.7056 1.1632 20 6 3.7467 1.9655 -0.1260 21 1 3.9803 2.5704 -1.0022 22 7 4.4249 0.6650 -0.2088 23 6 5.8620 0.8348 -0.5138 24 6 6.5651 -0.3211 0.2406 25 6 5.7267 -0.4021 1.5434 26 6 4.2980 -0.0787 1.0580 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8229 1.6471 2.1381 31 1 0.8811 2.9077 1.2833 32 1 3.3018 2.8343 3.6088 33 1 3.7332 4.5121 3.2000 34 1 2.2268 4.5010 5.4340 35 1 0.9650 5.5371 8.3451 36 1 4.5032 1.9950 1.9166 37 1 4.9452 3.4337 0.9479 38 1 6.2162 1.7981 -0.1471 39 1 6.0356 0.7489 -1.5865 40 1 7.6032 -0.0702 0.4593 41 1 6.5010 -1.2516 -0.3234 42 1 5.7716 -1.4046 1.9689 43 1 6.0673 0.3381 2.2675 44 1 3.7449 -1.0031 0.8915 45 1 3.7837 0.5325 1.7996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332412113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:49 Heat of formation + Delta-G solvation = -3.936174 kcal Electronic energy + Delta-G solvation = -25090.338049 eV Core-core repulsion = 21655.607303 eV Total energy + Delta-G solvation = -3434.730746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36108 -38.45180 -36.81362 -34.00992 -32.68137 -31.31792 -30.30609 -29.21514 -28.42391 -27.89990 -26.28119 -24.28829 -22.19185 -21.57020 -21.03178 -19.74539 -19.17042 -17.93389 -17.11467 -16.17782 -16.11763 -15.44335 -15.23798 -14.83578 -14.60831 -14.23077 -14.10995 -13.74253 -13.56001 -13.43818 -13.25748 -13.16903 -12.79318 -12.46545 -12.27493 -11.97794 -11.88337 -11.57151 -11.48785 -11.36659 -11.36072 -11.15100 -11.12357 -10.90808 -10.76924 -10.68710 -10.41533 -10.26197 -9.56179 -9.47932 -8.51032 -8.38966 -8.07990 -7.97747 -7.32864 -6.46087 -3.87140 1.86844 2.75645 3.14572 3.23829 3.29489 3.80608 3.84868 4.06496 4.29455 4.40926 4.57949 4.59576 4.71452 4.87640 5.02900 5.13950 5.21004 5.21601 5.29911 5.31539 5.34918 5.38841 5.39836 5.55380 5.64915 5.67593 5.69255 5.75237 5.84055 5.87713 5.91131 5.94275 5.96300 6.12648 6.19642 6.20060 6.48586 6.87136 6.89634 7.08808 7.17752 7.51034 8.00942 8.56188 9.13080 9.48516 9.99740 10.71496 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.003494 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.481445 B = 8010.682553 C = 8756.902706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.198 6.198 3 C -0.062 4.062 4 H 0.096 0.904 5 C 0.042 3.958 6 N -0.481 5.481 7 C 0.035 3.965 8 C 0.442 3.558 9 O -0.582 6.582 10 N -0.560 5.560 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.900 5.900 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.005 4.005 20 C 0.097 3.903 21 H 0.100 0.900 22 N -0.510 5.510 23 C 0.040 3.960 24 C -0.127 4.127 25 C -0.144 4.144 26 C 0.036 3.964 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.909 -10.901 -12.510 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.029 5.971 3 C -0.192 4.192 4 H 0.114 0.886 5 C -0.088 4.088 6 N -0.206 5.206 7 C -0.097 4.097 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.196 5.196 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.178 4.178 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.135 4.135 20 C -0.014 4.014 21 H 0.118 0.882 22 N -0.233 5.233 23 C -0.087 4.087 24 C -0.165 4.165 25 C -0.183 4.183 26 C -0.093 4.093 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.587 -11.454 -13.519 20.146 hybrid contribution -0.659 1.169 1.986 2.397 sum 8.928 -10.285 -11.532 17.846 Atomic orbital electron populations 1.23593 0.98316 1.05575 1.04849 1.87147 1.03125 1.09115 1.97671 1.24225 0.98350 0.94784 1.01851 0.88573 1.23765 0.98735 0.93361 0.92918 1.65250 1.02107 1.37129 1.16078 1.22096 0.98354 1.00700 0.88554 1.19665 0.89364 0.84939 0.83316 1.90442 1.42776 1.59053 1.54395 1.41843 1.12376 1.57428 1.07952 1.19698 0.88583 1.40327 0.94342 0.87886 1.25269 0.99264 0.97521 0.95791 1.69610 1.30939 1.48332 1.05274 0.85855 0.81492 0.78517 0.78431 1.20384 1.20873 1.19375 1.23988 0.94740 0.97524 0.97238 1.22384 0.91471 0.89647 0.97848 0.88243 1.63870 1.11568 1.15816 1.32088 1.23056 0.87245 0.97711 1.00732 1.22673 0.98637 0.99075 0.96141 1.22862 0.95714 1.02153 0.97550 1.23074 0.95976 0.99699 0.90515 0.88884 0.90569 0.91104 0.93339 0.86448 0.93378 0.89093 0.77448 0.91807 0.92710 0.90131 0.93334 0.90230 0.91080 0.90716 0.90834 0.91695 0.88945 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.69 101.05 1.08 -0.77 16 2 S -0.20 -2.59 16.81 -107.50 -1.81 -4.40 16 3 C -0.06 -0.86 3.32 -25.35 -0.08 -0.95 16 4 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 5 C 0.04 0.70 4.43 -2.18 -0.01 0.69 16 6 N -0.48 -8.05 5.34 -231.40 -1.23 -9.29 16 7 C 0.03 0.63 5.55 -4.98 -0.03 0.60 16 8 C 0.44 10.30 7.50 -10.99 -0.08 10.21 16 9 O -0.58 -15.22 13.24 5.55 0.07 -15.14 16 10 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 11 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 12 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 14 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 15 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.00 -0.06 4.80 -2.18 -0.01 -0.07 16 20 C 0.10 1.20 3.04 -66.33 -0.20 1.00 16 21 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 22 N -0.51 -5.77 4.29 -221.60 -0.95 -6.72 16 23 C 0.04 0.37 6.53 -2.27 -0.01 0.36 16 24 C -0.13 -1.05 7.07 -24.60 -0.17 -1.23 16 25 C -0.14 -1.35 6.80 -24.91 -0.17 -1.52 16 26 C 0.04 0.41 3.95 -2.84 -0.01 0.40 16 27 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.05 0.86 7.35 -51.93 -0.38 0.48 16 31 H 0.12 2.37 6.05 -51.93 -0.31 2.05 16 32 H 0.05 0.80 7.88 -51.92 -0.41 0.39 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.05 0.71 4.88 -51.93 -0.25 0.46 16 37 H 0.08 0.98 8.09 -51.92 -0.42 0.56 16 38 H 0.05 0.44 7.16 -51.93 -0.37 0.07 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 44 H 0.09 1.14 6.61 -50.10 -0.33 0.81 16 45 H 0.07 0.88 4.63 -51.93 -0.24 0.64 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -29.39 353.03 -10.09 -39.48 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -7.19 Total: 11.77 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 0.05 Total: 0.82 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -1.52 Total: -53.73 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.07 Total: -15.14 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -1.81 Total: -4.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.39 -10.09 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332412113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.547 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds