Wall clock time and date at job start Fri Apr 10 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.99666 * 2 1 4 4 C 1.52998 * 109.47020 * 173.49406 * 3 2 1 5 5 C 1.53004 * 109.47215 * 184.74587 * 4 3 2 6 6 O 1.42896 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.54329 * 109.88065 * 238.91050 * 2 1 3 8 8 C 1.55155 * 102.93785 * 262.77144 * 7 2 1 9 9 C 1.54916 * 101.58571 * 324.49663 * 8 7 2 10 10 N 1.47016 * 109.88750 * 121.09919 * 2 1 3 11 11 C 1.34777 * 125.64989 * 300.44400 * 10 2 1 12 12 O 1.21592 * 119.99995 * 355.00980 * 11 10 2 13 13 N 1.34772 * 120.00693 * 175.01373 * 11 10 2 14 14 C 1.46494 * 120.00696 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47423 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00390 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00047 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00162 * 180.02562 * 17 15 14 19 19 H 1.08007 * 120.00048 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00277 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99622 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47259 * 60.00218 * 22 20 18 24 24 H 1.48499 * 109.46897 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46856 * 299.99586 * 22 20 18 26 26 H 1.09007 * 109.47197 * 181.09548 * 1 2 3 27 27 H 1.09006 * 109.47069 * 301.08992 * 1 2 3 28 28 H 1.08994 * 109.47782 * 61.09422 * 1 2 3 29 29 H 1.09000 * 109.47084 * 293.49765 * 3 2 1 30 30 H 1.09001 * 109.46879 * 53.49756 * 3 2 1 31 31 H 1.08996 * 109.47902 * 304.74665 * 4 3 2 32 32 H 1.09004 * 109.47032 * 64.74888 * 4 3 2 33 33 H 1.09008 * 109.46825 * 300.00412 * 5 4 3 34 34 H 1.08994 * 109.46938 * 60.00196 * 5 4 3 35 35 H 0.96699 * 114.00479 * 180.02562 * 6 5 4 36 36 H 1.08999 * 110.72193 * 144.41087 * 7 2 1 37 37 H 1.08996 * 110.72021 * 21.13041 * 7 2 1 38 38 H 1.08993 * 111.00888 * 82.57637 * 8 7 2 39 39 H 1.09002 * 111.00449 * 206.38790 * 8 7 2 40 40 H 1.08996 * 110.36381 * 155.84842 * 9 8 7 41 41 H 1.09000 * 110.36203 * 278.17516 * 9 8 7 42 42 H 0.97004 * 119.99675 * 0.02562 * 13 11 10 43 43 H 1.09005 * 109.47449 * 300.00479 * 14 13 11 44 44 H 1.09005 * 109.46905 * 60.00041 * 14 13 11 45 45 H 0.96999 * 120.00430 * 0.02562 * 17 15 14 46 46 H 0.96997 * 119.99699 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 6 3.5743 1.4269 0.1634 5 6 4.0849 2.8644 0.2822 6 8 5.5057 2.8543 0.4343 7 6 2.0547 -0.7494 -1.2428 8 6 2.3518 -2.1694 -0.6926 9 6 2.8569 -1.8498 0.7367 10 7 2.0300 -0.7141 1.1838 11 6 1.7754 -0.3846 2.4656 12 8 1.1535 0.6285 2.7209 13 7 2.2101 -1.1781 3.4646 14 6 1.9339 -0.8197 4.8579 15 6 2.5225 -1.8637 5.7713 16 8 3.1150 -2.8136 5.3045 17 7 2.3906 -1.7421 7.1071 18 6 2.9265 -2.6916 7.9382 19 1 3.4548 -3.5370 7.5225 20 6 2.7901 -2.5665 9.3153 21 7 2.1468 -1.5382 9.8211 22 14 3.5210 -3.8599 10.4477 23 1 4.9894 -3.9290 10.2376 24 1 3.2401 -3.4970 11.8600 25 1 2.9148 -5.1815 10.1458 26 1 -0.3634 -1.0275 0.0196 27 1 -0.3633 0.5307 0.8801 28 1 -0.3634 0.4967 -0.8995 29 1 1.7924 1.9193 -0.9424 30 1 1.6029 1.9882 0.8261 31 1 3.8393 0.8718 1.0633 32 1 4.0296 0.9503 -0.7047 33 1 3.8200 3.4195 -0.6178 34 1 3.6296 3.3410 1.1503 35 1 5.8988 3.7339 0.5160 36 1 2.9655 -0.2830 -1.6184 37 1 1.2916 -0.7889 -2.0201 38 1 1.4453 -2.7736 -0.6606 39 1 3.1265 -2.6620 -1.2802 40 1 2.7089 -2.7080 1.3920 41 1 3.9092 -1.5666 0.7126 42 1 2.7066 -1.9862 3.2609 43 1 2.3797 0.1501 5.0789 44 1 0.8561 -0.7679 5.0128 45 1 1.9164 -0.9827 7.4805 46 1 2.0519 -1.4506 10.7824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:46 Heat of formation + Delta-G solvation = -123.035056 kcal Electronic energy + Delta-G solvation = -27059.598663 eV Core-core repulsion = 23176.950531 eV Total energy + Delta-G solvation = -3882.648132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72119 -38.65128 -37.66694 -37.03035 -34.51766 -33.94882 -33.22980 -31.67067 -31.29046 -30.95944 -27.40864 -26.35224 -25.37683 -24.46390 -22.53822 -21.73205 -20.85946 -19.60704 -19.01409 -18.05789 -17.72849 -17.12641 -16.36009 -15.78327 -15.65822 -15.45141 -15.04456 -14.72247 -14.41068 -14.11529 -14.06655 -13.85503 -13.58620 -13.22733 -13.16372 -13.03120 -12.87800 -12.33409 -12.15922 -12.00569 -11.89478 -11.60742 -11.52229 -11.33958 -11.28105 -11.08735 -11.02837 -10.72216 -10.57996 -10.49134 -10.29166 -10.08458 -9.76194 -9.60345 -8.84112 -8.59559 -8.37263 -8.07435 -6.49074 -3.91045 2.72278 3.15382 3.22818 3.26828 3.44242 3.78144 3.99646 4.05401 4.19341 4.40548 4.51698 4.66837 4.87474 4.90511 4.94567 5.00518 5.15947 5.19607 5.22339 5.30087 5.36488 5.47914 5.50575 5.57430 5.64691 5.70993 5.74319 5.77859 5.89438 5.94937 6.00333 6.04469 6.10497 6.14161 6.24391 6.25643 6.53383 6.82996 7.27836 7.46230 7.47957 7.94721 8.26022 8.48030 8.87429 9.06984 9.42151 9.90285 10.67851 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002900 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.585391 B = 9651.574257 C =10189.413802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.187 3.813 3 C -0.123 4.123 4 C -0.114 4.114 5 C 0.076 3.924 6 O -0.576 6.576 7 C -0.127 4.127 8 C -0.130 4.130 9 C 0.097 3.903 10 N -0.628 5.628 11 C 0.725 3.275 12 O -0.592 6.592 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.429 3.571 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.377 0.623 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.406 0.594 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 5.960 -22.120 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.101 3.899 3 C -0.161 4.161 4 C -0.151 4.151 5 C -0.002 4.002 6 O -0.381 6.381 7 C -0.165 4.165 8 C -0.168 4.168 9 C -0.027 4.027 10 N -0.367 5.367 11 C 0.427 3.573 12 O -0.471 6.471 13 N -0.382 5.382 14 C 0.001 3.999 15 C 0.215 3.785 16 O -0.484 6.484 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.536 5.536 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.224 0.776 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.244 0.756 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.698 5.490 -21.916 22.604 hybrid contribution 0.359 0.083 0.917 0.989 sum -0.338 5.573 -20.998 21.728 Atomic orbital electron populations 1.22153 0.94170 1.02272 1.02868 1.20718 0.93902 0.91425 0.83824 1.21859 0.94930 0.96474 1.02838 1.21465 0.95079 0.95510 1.03074 1.22212 0.80795 0.97924 0.99235 1.86488 1.21018 1.33933 1.96645 1.22809 1.01963 0.95441 0.96292 1.22729 1.01953 0.96871 0.95252 1.22307 0.95144 0.89426 0.95797 1.47580 1.54041 1.31617 1.03490 1.15322 0.79802 0.82989 0.79198 1.90863 1.46949 1.26789 1.82509 1.44830 1.60689 1.28025 1.04636 1.20764 1.01029 0.98057 0.80056 1.19772 0.86536 0.88600 0.83602 1.90486 1.47901 1.34676 1.75380 1.41776 1.48667 1.24067 1.03916 1.19680 1.32524 1.04176 0.87071 0.87763 1.25317 0.97037 0.97813 0.97526 1.69610 1.41047 1.29071 1.13825 0.85876 0.79465 0.80264 0.78381 1.19787 1.20870 1.19795 0.92534 0.90804 0.92051 0.91416 0.89809 0.90966 0.91637 0.94062 0.93590 0.77645 0.90170 0.90038 0.90582 0.89929 0.90626 0.91379 0.75634 0.90121 0.90108 0.77031 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.37 37.15 0.31 -1.37 16 2 C 0.19 1.99 0.53 -130.84 -0.07 1.92 16 3 C -0.12 -1.31 4.07 -26.73 -0.11 -1.42 16 4 C -0.11 -1.29 5.17 -26.73 -0.14 -1.43 16 5 C 0.08 0.80 7.05 37.16 0.26 1.06 16 6 O -0.58 -6.48 13.66 -35.23 -0.48 -6.97 16 7 C -0.13 -0.99 5.85 -24.89 -0.15 -1.13 16 8 C -0.13 -1.02 7.08 -24.58 -0.17 -1.20 16 9 C 0.10 1.03 6.68 -2.53 -0.02 1.02 16 10 N -0.63 -8.20 1.74 -161.45 -0.28 -8.48 16 11 C 0.72 12.23 7.82 -86.92 -0.68 11.55 16 12 O -0.59 -11.38 14.09 5.29 0.07 -11.31 16 13 N -0.72 -12.88 5.49 -66.42 -0.36 -13.24 16 14 C 0.13 2.49 6.15 -5.20 -0.03 2.46 16 15 C 0.43 10.07 7.85 -10.99 -0.09 9.98 16 16 O -0.60 -15.56 15.24 5.55 0.08 -15.47 16 17 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 18 C -0.31 -8.38 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.00 6.93 -51.93 -0.36 0.64 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.07 1.03 7.07 -51.93 -0.37 0.66 16 32 H 0.07 0.68 6.53 -51.93 -0.34 0.34 16 33 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.38 2.45 9.12 45.56 0.42 2.86 16 36 H 0.08 0.59 6.16 -51.93 -0.32 0.27 16 37 H 0.08 0.52 7.83 -51.93 -0.41 0.11 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.84 7.12 -51.93 -0.37 0.47 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.41 7.17 5.84 -40.82 -0.24 6.93 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.40 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -32.94 369.57 -7.28 -40.22 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -6.41 Total: 17.78 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.12 Total: 13.50 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.02 Total: -59.02 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.32 Total: -33.75 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.94 -7.28 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.812 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds