Wall clock time and date at job start Fri Apr 10 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.99666 * 2 1 4 4 C 1.52998 * 109.47020 * 173.49406 * 3 2 1 5 5 C 1.53004 * 109.47215 * 184.74587 * 4 3 2 6 6 O 1.42896 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.54329 * 109.88065 * 238.91050 * 2 1 3 8 8 C 1.55155 * 102.93785 * 262.77144 * 7 2 1 9 9 C 1.54916 * 101.58571 * 324.49663 * 8 7 2 10 10 N 1.47016 * 109.88750 * 121.09919 * 2 1 3 11 11 C 1.34777 * 125.64989 * 300.44400 * 10 2 1 12 12 O 1.21592 * 119.99995 * 355.00980 * 11 10 2 13 13 N 1.34772 * 120.00693 * 175.01373 * 11 10 2 14 14 C 1.46494 * 120.00696 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47423 * 179.97438 * 14 13 11 16 16 O 1.21290 * 120.00390 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00047 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00162 * 180.02562 * 17 15 14 19 19 H 1.08007 * 120.00048 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00277 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99622 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47259 * 60.00218 * 22 20 18 24 24 H 1.48499 * 109.46897 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46856 * 299.99586 * 22 20 18 26 26 H 1.09007 * 109.47197 * 181.09548 * 1 2 3 27 27 H 1.09006 * 109.47069 * 301.08992 * 1 2 3 28 28 H 1.08994 * 109.47782 * 61.09422 * 1 2 3 29 29 H 1.09000 * 109.47084 * 293.49765 * 3 2 1 30 30 H 1.09001 * 109.46879 * 53.49756 * 3 2 1 31 31 H 1.08996 * 109.47902 * 304.74665 * 4 3 2 32 32 H 1.09004 * 109.47032 * 64.74888 * 4 3 2 33 33 H 1.09008 * 109.46825 * 300.00412 * 5 4 3 34 34 H 1.08994 * 109.46938 * 60.00196 * 5 4 3 35 35 H 0.96699 * 114.00479 * 180.02562 * 6 5 4 36 36 H 1.08999 * 110.72193 * 144.41087 * 7 2 1 37 37 H 1.08996 * 110.72021 * 21.13041 * 7 2 1 38 38 H 1.08993 * 111.00888 * 82.57637 * 8 7 2 39 39 H 1.09002 * 111.00449 * 206.38790 * 8 7 2 40 40 H 1.08996 * 110.36381 * 155.84842 * 9 8 7 41 41 H 1.09000 * 110.36203 * 278.17516 * 9 8 7 42 42 H 0.97004 * 119.99675 * 0.02562 * 13 11 10 43 43 H 1.09005 * 109.47449 * 300.00479 * 14 13 11 44 44 H 1.09005 * 109.46905 * 60.00041 * 14 13 11 45 45 H 0.96999 * 120.00430 * 0.02562 * 17 15 14 46 46 H 0.96997 * 119.99699 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 6 3.5743 1.4269 0.1634 5 6 4.0849 2.8644 0.2822 6 8 5.5057 2.8543 0.4343 7 6 2.0547 -0.7494 -1.2428 8 6 2.3518 -2.1694 -0.6926 9 6 2.8569 -1.8498 0.7367 10 7 2.0300 -0.7141 1.1838 11 6 1.7754 -0.3846 2.4656 12 8 1.1535 0.6285 2.7209 13 7 2.2101 -1.1781 3.4646 14 6 1.9339 -0.8197 4.8579 15 6 2.5225 -1.8637 5.7713 16 8 3.1150 -2.8136 5.3045 17 7 2.3906 -1.7421 7.1071 18 6 2.9265 -2.6916 7.9382 19 1 3.4548 -3.5370 7.5225 20 6 2.7901 -2.5665 9.3153 21 7 2.1468 -1.5382 9.8211 22 14 3.5210 -3.8599 10.4477 23 1 4.9894 -3.9290 10.2376 24 1 3.2401 -3.4970 11.8600 25 1 2.9148 -5.1815 10.1458 26 1 -0.3634 -1.0275 0.0196 27 1 -0.3633 0.5307 0.8801 28 1 -0.3634 0.4967 -0.8995 29 1 1.7924 1.9193 -0.9424 30 1 1.6029 1.9882 0.8261 31 1 3.8393 0.8718 1.0633 32 1 4.0296 0.9503 -0.7047 33 1 3.8200 3.4195 -0.6178 34 1 3.6296 3.3410 1.1503 35 1 5.8988 3.7339 0.5160 36 1 2.9655 -0.2830 -1.6184 37 1 1.2916 -0.7889 -2.0201 38 1 1.4453 -2.7736 -0.6606 39 1 3.1265 -2.6620 -1.2802 40 1 2.7089 -2.7080 1.3920 41 1 3.9092 -1.5666 0.7126 42 1 2.7066 -1.9862 3.2609 43 1 2.3797 0.1501 5.0789 44 1 0.8561 -0.7679 5.0128 45 1 1.9164 -0.9827 7.4805 46 1 2.0519 -1.4506 10.7824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:46 Heat of formation + Delta-G solvation = -148.130280 kcal Electronic energy + Delta-G solvation = -27060.686873 eV Core-core repulsion = 23176.950531 eV Total energy + Delta-G solvation = -3883.736343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80457 -40.35229 -39.02914 -37.88471 -36.26220 -35.47356 -34.35951 -33.39728 -32.58043 -31.80761 -29.05416 -27.17617 -26.51328 -26.07539 -23.52972 -22.57356 -21.88678 -21.30297 -20.45833 -19.94133 -18.80197 -18.10042 -17.41163 -17.36750 -16.92446 -16.55314 -16.49396 -16.39760 -15.91511 -15.57479 -15.22842 -15.13847 -14.65248 -14.31515 -14.14364 -13.94492 -13.92042 -13.80250 -13.55152 -13.43820 -13.14244 -12.90625 -12.82789 -12.48258 -12.36174 -12.16014 -12.14091 -12.03255 -11.91744 -11.57618 -11.49531 -11.39718 -11.03253 -10.88001 -10.57823 -10.26343 -10.10712 -9.48536 -8.51934 -6.02521 1.37235 1.41218 1.50467 1.56747 1.88033 2.14102 2.27434 2.88901 3.14984 3.16567 3.24912 3.62767 3.72398 3.93384 4.02849 4.14452 4.19350 4.22558 4.37983 4.39949 4.42543 4.43530 4.48762 4.60011 4.68586 4.72754 4.77724 4.84539 4.95555 5.03685 5.08938 5.13748 5.21382 5.25909 5.32927 5.35845 5.39250 5.43540 5.63112 5.90700 6.08606 6.46556 6.85320 6.96470 7.01826 7.40736 7.56177 7.92531 8.64874 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002900 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.585391 B = 9651.574257 C =10189.413802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.174 3.826 3 C -0.116 4.116 4 C -0.109 4.109 5 C 0.075 3.925 6 O -0.597 6.597 7 C -0.116 4.116 8 C -0.120 4.120 9 C 0.087 3.913 10 N -0.624 5.624 11 C 0.720 3.280 12 O -0.621 6.621 13 N -0.728 5.728 14 C 0.144 3.856 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.558 5.558 18 C -0.339 4.339 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.269 1.269 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.396 0.604 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.406 0.594 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.399 0.601 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 5.754 -24.226 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.090 3.910 3 C -0.155 4.155 4 C -0.147 4.147 5 C -0.002 4.002 6 O -0.405 6.405 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.035 4.035 10 N -0.361 5.361 11 C 0.422 3.578 12 O -0.502 6.502 13 N -0.387 5.387 14 C 0.015 3.985 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.193 5.193 18 C -0.468 4.468 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.194 1.194 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.245 0.755 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.244 0.756 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.233 0.767 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.485 5.305 -24.066 24.649 hybrid contribution 0.304 0.196 1.511 1.554 sum -0.181 5.500 -22.555 23.217 Atomic orbital electron populations 1.22110 0.94200 1.02033 1.02620 1.21089 0.94014 0.91779 0.84121 1.21802 0.94214 0.96388 1.03059 1.21414 0.95583 0.95788 1.01880 1.22232 0.80479 0.97590 0.99925 1.86434 1.21410 1.35976 1.96729 1.22818 1.03056 0.94507 0.95021 1.22734 1.02711 0.97269 0.93086 1.22525 0.95033 0.88261 0.97723 1.47676 1.53473 1.32254 1.02721 1.15460 0.79606 0.82507 0.80216 1.90839 1.48233 1.27850 1.83276 1.44797 1.61227 1.28359 1.04269 1.20537 1.01117 0.96596 0.80208 1.20383 0.85382 0.88728 0.83493 1.90458 1.48860 1.36034 1.75854 1.41819 1.49065 1.23999 1.04439 1.19718 1.34165 1.04777 0.88181 0.89564 1.26151 0.96890 0.99720 0.98321 1.69680 1.41279 1.30166 1.14482 0.84915 0.78627 0.77678 0.76687 1.19472 1.19538 1.19404 0.92578 0.94266 0.89177 0.88329 0.93049 0.94592 0.90115 0.91268 0.94991 0.75469 0.89094 0.87529 0.90302 0.87528 0.91559 0.91294 0.75634 0.89490 0.89219 0.76732 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.37 71.98 0.60 -2.45 16 2 C 0.17 3.45 0.53 3.96 0.00 3.45 16 3 C -0.12 -2.34 4.07 30.60 0.12 -2.22 16 4 C -0.11 -2.36 5.17 30.59 0.16 -2.20 16 5 C 0.08 1.50 7.05 71.98 0.51 2.01 16 6 O -0.60 -12.87 13.66 -148.98 -2.03 -14.90 16 7 C -0.12 -1.39 5.85 31.78 0.19 -1.21 16 8 C -0.12 -1.54 7.08 31.99 0.23 -1.31 16 9 C 0.09 1.79 6.68 86.86 0.58 2.37 16 10 N -0.62 -16.18 1.74 -782.95 -1.36 -17.54 16 11 C 0.72 24.95 7.82 179.06 1.40 26.35 16 12 O -0.62 -24.73 14.09 -4.00 -0.06 -24.78 16 13 N -0.73 -26.67 5.49 -482.31 -2.65 -29.32 16 14 C 0.14 5.70 6.15 85.63 0.53 6.23 16 15 C 0.43 20.88 7.85 87.65 0.69 21.57 16 16 O -0.62 -33.37 15.24 -3.06 -0.05 -33.42 16 17 N -0.56 -28.88 5.29 -306.98 -1.62 -30.50 16 18 C -0.34 -19.06 9.68 84.04 0.81 -18.24 16 19 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 20 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 21 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 22 Si 1.00 42.26 29.55 68.60 2.03 44.29 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.04 1.07 6.93 -2.38 -0.02 1.05 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.39 6.95 -2.39 -0.02 1.37 16 31 H 0.04 1.03 7.07 -2.39 -0.02 1.02 16 32 H 0.08 1.48 6.53 -2.38 -0.02 1.46 16 33 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.40 4.70 9.12 -74.06 -0.68 4.03 16 36 H 0.09 0.94 6.16 -2.39 -0.01 0.93 16 37 H 0.11 0.83 7.83 -2.39 -0.02 0.81 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 1.48 7.12 -2.39 -0.02 1.46 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.41 14.80 5.84 -92.71 -0.54 14.26 16 43 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 44 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 45 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 46 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -72.78 369.57 -0.11 -72.89 By element: Atomic # 1 Polarization: 49.07 SS G_CDS: -0.93 Total: 48.14 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 6.28 Total: 34.28 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -5.35 Total: -126.50 kcal Atomic # 8 Polarization: -70.96 SS G_CDS: -2.14 Total: -73.10 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.78 -0.11 -72.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.243 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds