Wall clock time and date at job start Fri Apr 10 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.00153 * 2 1 4 4 C 1.52997 * 109.47547 * 184.55259 * 3 2 1 5 5 C 1.52999 * 109.47249 * 181.76762 * 4 3 2 6 6 O 1.42901 * 109.46898 * 180.02562 * 5 4 3 7 7 C 1.54332 * 109.78203 * 121.16810 * 2 1 3 8 8 C 1.55159 * 103.01957 * 97.49284 * 7 2 1 9 9 C 1.54910 * 101.58224 * 35.31223 * 8 7 2 10 10 N 1.47027 * 109.88018 * 238.90777 * 2 1 3 11 11 C 1.34776 * 125.64599 * 59.56235 * 10 2 1 12 12 O 1.21589 * 120.00114 * 354.32216 * 11 10 2 13 13 N 1.34779 * 119.99657 * 174.32536 * 11 10 2 14 14 C 1.46506 * 119.99888 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47277 * 180.02562 * 14 13 11 16 16 O 1.21300 * 119.99804 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37107 * 119.99782 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99789 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99976 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00099 * 179.71922 * 20 18 17 23 23 H 1.48500 * 109.47285 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46958 * 119.99770 * 22 20 18 25 25 H 1.48502 * 109.47390 * 239.99683 * 22 20 18 26 26 H 1.08998 * 109.47488 * 179.63861 * 1 2 3 27 27 H 1.09004 * 109.46867 * 299.64184 * 1 2 3 28 28 H 1.08997 * 109.47127 * 59.63584 * 1 2 3 29 29 H 1.08995 * 109.47280 * 304.55680 * 3 2 1 30 30 H 1.09005 * 109.46666 * 64.55647 * 3 2 1 31 31 H 1.08997 * 109.47328 * 301.77018 * 4 3 2 32 32 H 1.09000 * 109.47317 * 61.76805 * 4 3 2 33 33 H 1.08997 * 109.47650 * 300.00142 * 5 4 3 34 34 H 1.09004 * 109.47073 * 60.00726 * 5 4 3 35 35 H 0.96703 * 114.00047 * 179.97438 * 6 5 4 36 36 H 1.08996 * 110.85104 * 339.02979 * 7 2 1 37 37 H 1.09003 * 110.51640 * 215.80501 * 7 2 1 38 38 H 1.08993 * 111.00637 * 277.23537 * 8 7 2 39 39 H 1.08999 * 111.00247 * 153.37950 * 8 7 2 40 40 H 1.09002 * 110.36746 * 204.15212 * 9 8 7 41 41 H 1.09001 * 110.46322 * 81.87085 * 9 8 7 42 42 H 0.96993 * 120.00370 * 359.97438 * 13 11 10 43 43 H 1.08996 * 109.47120 * 59.99734 * 14 13 11 44 44 H 1.09001 * 109.47037 * 299.99996 * 14 13 11 45 45 H 0.96996 * 120.00046 * 359.97438 * 17 15 14 46 46 H 0.97006 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 6 3.5789 1.4252 -0.1145 5 6 4.1055 2.8611 -0.0701 6 8 5.5304 2.8493 -0.1777 7 6 2.0523 -0.7516 1.2426 8 6 2.3561 -2.1698 0.6913 9 6 2.8612 -1.8465 -0.7370 10 7 2.0299 -0.7140 -1.1840 11 6 1.7752 -0.3843 -2.4658 12 8 0.9954 0.5135 -2.7191 13 7 2.3849 -1.0498 -3.4667 14 6 2.1077 -0.6918 -4.8600 15 6 2.9095 -1.5800 -5.7760 16 8 3.6411 -2.4284 -5.3107 17 7 2.8146 -1.4310 -7.1121 18 6 3.5437 -2.2395 -7.9455 19 1 4.1944 -2.9954 -7.5313 20 6 3.4455 -2.0863 -9.3230 21 7 2.6533 -1.1669 -9.8270 22 14 4.4448 -3.1826 -10.4583 23 1 5.2559 -4.1261 -9.6477 24 1 3.5278 -3.9495 -11.3393 25 1 5.3446 -2.3441 -11.2905 26 1 -0.3634 -1.0276 -0.0065 27 1 -0.3633 0.5083 0.8932 28 1 -0.3633 0.5195 -0.8867 29 1 1.6298 1.9785 -0.8463 30 1 1.7626 1.9301 0.9281 31 1 4.0009 0.8577 0.7149 32 1 3.8688 0.9609 -1.0571 33 1 3.6835 3.4286 -0.8995 34 1 3.8157 3.3254 0.8725 35 1 5.9336 3.7280 -0.1570 36 1 1.2886 -0.7952 2.0191 37 1 2.9607 -0.2816 1.6196 38 1 1.4521 -2.7778 0.6577 39 1 3.1328 -2.6592 1.2788 40 1 2.7177 -2.7048 -1.3935 41 1 3.9125 -1.5594 -0.7135 42 1 3.0073 -1.7658 -3.2646 43 1 2.3835 0.3490 -5.0294 44 1 1.0453 -0.8241 -5.0646 45 1 2.2299 -0.7524 -7.4841 46 1 2.5845 -1.0602 -10.7887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:49 Heat of formation + Delta-G solvation = -123.485203 kcal Electronic energy + Delta-G solvation = -27057.122058 eV Core-core repulsion = 23174.454406 eV Total energy + Delta-G solvation = -3882.667652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71367 -38.65532 -37.68222 -37.04029 -34.50756 -33.94927 -33.27017 -31.66381 -31.28812 -30.95238 -27.40452 -26.34065 -25.39164 -24.46571 -22.54608 -21.75991 -20.85690 -19.60376 -19.01485 -18.05842 -17.72961 -17.12622 -16.35761 -15.81875 -15.70991 -15.44463 -15.01985 -14.73596 -14.37741 -14.10338 -14.02828 -13.90787 -13.59604 -13.26625 -13.12445 -13.04862 -12.86587 -12.36039 -12.15754 -12.00559 -11.89053 -11.61055 -11.51027 -11.36963 -11.28996 -11.12439 -11.03410 -10.73843 -10.57523 -10.39217 -10.30317 -10.10324 -9.75824 -9.62366 -8.83683 -8.59441 -8.37463 -8.07352 -6.49219 -3.91096 2.72264 3.11840 3.23837 3.30730 3.43996 3.78060 3.97581 4.05474 4.19666 4.39977 4.52417 4.66727 4.84770 4.90247 4.93451 5.00854 5.15292 5.19633 5.20918 5.28209 5.34146 5.47709 5.50063 5.56729 5.64652 5.70213 5.74571 5.76999 5.88998 5.95408 6.01077 6.04404 6.10100 6.12924 6.22143 6.27769 6.54172 6.83142 7.28372 7.44517 7.48423 7.95262 8.26062 8.47964 8.87377 9.07227 9.42275 9.90261 10.67828 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002922 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.609498 B = 9579.382431 C =10095.294037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.187 3.813 3 C -0.123 4.123 4 C -0.116 4.116 5 C 0.076 3.924 6 O -0.575 6.575 7 C -0.128 4.128 8 C -0.129 4.129 9 C 0.096 3.904 10 N -0.628 5.628 11 C 0.725 3.275 12 O -0.593 6.593 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.430 3.570 16 O -0.597 6.597 17 N -0.550 5.550 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.280 1.280 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.377 0.623 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.406 0.594 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 5.051 22.416 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.102 3.898 3 C -0.161 4.161 4 C -0.153 4.153 5 C -0.002 4.002 6 O -0.380 6.380 7 C -0.166 4.166 8 C -0.167 4.167 9 C -0.027 4.027 10 N -0.367 5.367 11 C 0.427 3.573 12 O -0.471 6.471 13 N -0.381 5.381 14 C 0.001 3.999 15 C 0.215 3.785 16 O -0.484 6.484 17 N -0.185 5.185 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.224 0.776 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.244 0.756 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.886 4.562 22.151 22.695 hybrid contribution 0.473 0.188 -0.872 1.010 sum -1.413 4.750 21.279 21.849 Atomic orbital electron populations 1.22175 0.94069 1.02262 1.03017 1.20717 0.94071 0.91244 0.83809 1.21848 0.94779 0.96519 1.02980 1.21494 0.94997 0.95450 1.03373 1.22211 0.80739 0.97958 0.99275 1.86498 1.20328 1.34017 1.97178 1.22829 1.01995 0.95457 0.96321 1.22719 1.01909 0.96869 0.95223 1.22307 0.95109 0.89460 0.95844 1.47577 1.53939 1.31735 1.03475 1.15329 0.80885 0.81906 0.79192 1.90860 1.39724 1.33968 1.82595 1.44832 1.48693 1.40066 1.04548 1.20767 1.00065 0.99042 0.80050 1.19779 0.87277 0.87814 0.83608 1.90492 1.43803 1.38609 1.75483 1.41792 1.39905 1.32941 1.03863 1.19777 1.22067 1.14477 0.86971 0.87656 1.25318 0.97430 0.97458 0.97553 1.69630 1.37425 1.32800 1.13683 0.85764 0.79221 0.79530 0.79610 1.19145 1.20645 1.20624 0.92622 0.92253 0.90364 0.90111 0.91233 0.91358 0.91053 0.93685 0.93984 0.77623 0.90018 0.90131 0.90597 0.89919 0.90629 0.91404 0.75629 0.90104 0.90112 0.77039 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.36 37.15 0.31 -1.40 16 2 C 0.19 2.00 0.54 -130.84 -0.07 1.93 16 3 C -0.12 -1.30 4.15 -26.73 -0.11 -1.42 16 4 C -0.12 -1.29 5.16 -26.73 -0.14 -1.43 16 5 C 0.08 0.77 7.05 37.16 0.26 1.03 16 6 O -0.58 -6.37 13.66 -35.23 -0.48 -6.85 16 7 C -0.13 -1.00 5.84 -24.89 -0.15 -1.14 16 8 C -0.13 -1.01 7.09 -24.58 -0.17 -1.19 16 9 C 0.10 1.03 6.47 -2.53 -0.02 1.01 16 10 N -0.63 -8.21 1.89 -161.43 -0.31 -8.51 16 11 C 0.72 12.24 7.96 -86.92 -0.69 11.55 16 12 O -0.59 -11.42 14.05 5.29 0.07 -11.35 16 13 N -0.72 -12.88 5.49 -66.41 -0.36 -13.24 16 14 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 15 C 0.43 10.08 7.85 -10.99 -0.09 9.99 16 16 O -0.60 -15.57 15.24 5.54 0.08 -15.48 16 17 N -0.55 -13.86 5.29 -10.96 -0.06 -13.91 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 19 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -24.13 13.05 55.50 0.72 -23.41 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.08 6.58 -51.93 -0.34 0.74 16 29 H 0.08 1.07 7.19 -51.93 -0.37 0.70 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.70 6.23 -51.93 -0.32 0.38 16 32 H 0.07 1.01 7.45 -51.93 -0.39 0.62 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 2.37 9.12 45.56 0.42 2.79 16 36 H 0.08 0.52 7.83 -51.93 -0.41 0.11 16 37 H 0.08 0.59 5.96 -51.93 -0.31 0.28 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.84 7.52 -51.93 -0.39 0.45 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.41 7.19 6.05 -40.82 -0.25 6.94 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.40 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -33.04 370.05 -7.33 -40.37 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -6.42 Total: 17.62 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -1.13 Total: 13.48 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.00 Total: -59.07 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.32 Total: -33.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.04 -7.33 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.116 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds