Wall clock time and date at job start Fri Apr 10 2020 18:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.00153 * 2 1 4 4 C 1.52997 * 109.47547 * 184.55259 * 3 2 1 5 5 C 1.52999 * 109.47249 * 181.76762 * 4 3 2 6 6 O 1.42901 * 109.46898 * 180.02562 * 5 4 3 7 7 C 1.54332 * 109.78203 * 121.16810 * 2 1 3 8 8 C 1.55159 * 103.01957 * 97.49284 * 7 2 1 9 9 C 1.54910 * 101.58224 * 35.31223 * 8 7 2 10 10 N 1.47027 * 109.88018 * 238.90777 * 2 1 3 11 11 C 1.34776 * 125.64599 * 59.56235 * 10 2 1 12 12 O 1.21589 * 120.00114 * 354.32216 * 11 10 2 13 13 N 1.34779 * 119.99657 * 174.32536 * 11 10 2 14 14 C 1.46506 * 119.99888 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47277 * 180.02562 * 14 13 11 16 16 O 1.21300 * 119.99804 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99903 * 180.02562 * 15 14 13 18 18 C 1.37107 * 119.99782 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99789 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99976 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00099 * 179.71922 * 20 18 17 23 23 H 1.48500 * 109.47285 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46958 * 119.99770 * 22 20 18 25 25 H 1.48502 * 109.47390 * 239.99683 * 22 20 18 26 26 H 1.08998 * 109.47488 * 179.63861 * 1 2 3 27 27 H 1.09004 * 109.46867 * 299.64184 * 1 2 3 28 28 H 1.08997 * 109.47127 * 59.63584 * 1 2 3 29 29 H 1.08995 * 109.47280 * 304.55680 * 3 2 1 30 30 H 1.09005 * 109.46666 * 64.55647 * 3 2 1 31 31 H 1.08997 * 109.47328 * 301.77018 * 4 3 2 32 32 H 1.09000 * 109.47317 * 61.76805 * 4 3 2 33 33 H 1.08997 * 109.47650 * 300.00142 * 5 4 3 34 34 H 1.09004 * 109.47073 * 60.00726 * 5 4 3 35 35 H 0.96703 * 114.00047 * 179.97438 * 6 5 4 36 36 H 1.08996 * 110.85104 * 339.02979 * 7 2 1 37 37 H 1.09003 * 110.51640 * 215.80501 * 7 2 1 38 38 H 1.08993 * 111.00637 * 277.23537 * 8 7 2 39 39 H 1.08999 * 111.00247 * 153.37950 * 8 7 2 40 40 H 1.09002 * 110.36746 * 204.15212 * 9 8 7 41 41 H 1.09001 * 110.46322 * 81.87085 * 9 8 7 42 42 H 0.96993 * 120.00370 * 359.97438 * 13 11 10 43 43 H 1.08996 * 109.47120 * 59.99734 * 14 13 11 44 44 H 1.09001 * 109.47037 * 299.99996 * 14 13 11 45 45 H 0.96996 * 120.00046 * 359.97438 * 17 15 14 46 46 H 0.97006 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0533 1.4377 0.0000 4 6 3.5789 1.4252 -0.1145 5 6 4.1055 2.8611 -0.0701 6 8 5.5304 2.8493 -0.1777 7 6 2.0523 -0.7516 1.2426 8 6 2.3561 -2.1698 0.6913 9 6 2.8612 -1.8465 -0.7370 10 7 2.0299 -0.7140 -1.1840 11 6 1.7752 -0.3843 -2.4658 12 8 0.9954 0.5135 -2.7191 13 7 2.3849 -1.0498 -3.4667 14 6 2.1077 -0.6918 -4.8600 15 6 2.9095 -1.5800 -5.7760 16 8 3.6411 -2.4284 -5.3107 17 7 2.8146 -1.4310 -7.1121 18 6 3.5437 -2.2395 -7.9455 19 1 4.1944 -2.9954 -7.5313 20 6 3.4455 -2.0863 -9.3230 21 7 2.6533 -1.1669 -9.8270 22 14 4.4448 -3.1826 -10.4583 23 1 5.2559 -4.1261 -9.6477 24 1 3.5278 -3.9495 -11.3393 25 1 5.3446 -2.3441 -11.2905 26 1 -0.3634 -1.0276 -0.0065 27 1 -0.3633 0.5083 0.8932 28 1 -0.3633 0.5195 -0.8867 29 1 1.6298 1.9785 -0.8463 30 1 1.7626 1.9301 0.9281 31 1 4.0009 0.8577 0.7149 32 1 3.8688 0.9609 -1.0571 33 1 3.6835 3.4286 -0.8995 34 1 3.8157 3.3254 0.8725 35 1 5.9336 3.7280 -0.1570 36 1 1.2886 -0.7952 2.0191 37 1 2.9607 -0.2816 1.6196 38 1 1.4521 -2.7778 0.6577 39 1 3.1328 -2.6592 1.2788 40 1 2.7177 -2.7048 -1.3935 41 1 3.9125 -1.5594 -0.7135 42 1 3.0073 -1.7658 -3.2646 43 1 2.3835 0.3490 -5.0294 44 1 1.0453 -0.8241 -5.0646 45 1 2.2299 -0.7524 -7.4841 46 1 2.5845 -1.0602 -10.7887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:48 Heat of formation + Delta-G solvation = -148.776913 kcal Electronic energy + Delta-G solvation = -27058.218789 eV Core-core repulsion = 23174.454406 eV Total energy + Delta-G solvation = -3883.764383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79901 -40.35398 -39.04508 -37.88012 -36.26279 -35.46548 -34.39616 -33.39896 -32.57355 -31.80257 -29.05136 -27.16259 -26.51784 -26.08443 -23.53720 -22.59231 -21.88442 -21.30457 -20.45637 -19.94351 -18.79482 -18.09414 -17.42478 -17.33658 -16.95199 -16.60671 -16.49632 -16.41858 -15.90409 -15.48665 -15.24627 -15.12462 -14.70644 -14.32160 -14.13873 -13.95188 -13.91029 -13.78975 -13.56525 -13.46085 -13.17034 -12.92415 -12.80256 -12.46039 -12.35408 -12.18013 -12.11861 -12.04485 -11.90831 -11.59417 -11.51359 -11.38773 -11.03384 -10.87421 -10.57955 -10.26280 -10.10605 -9.48819 -8.52315 -6.02749 1.34089 1.41400 1.51650 1.58528 1.87488 2.13746 2.27280 2.88927 3.14659 3.16623 3.24420 3.61965 3.72516 3.93396 4.01251 4.14364 4.19153 4.23010 4.37719 4.39612 4.42135 4.43274 4.48177 4.59181 4.68337 4.73355 4.76525 4.83608 4.95657 5.03710 5.09513 5.13202 5.19666 5.25819 5.34297 5.35305 5.38609 5.43996 5.63717 5.90897 6.08884 6.46368 6.86053 6.96175 7.01955 7.40606 7.55791 7.92413 8.64933 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002922 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.609498 B = 9579.382431 C =10095.294037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.175 3.825 3 C -0.116 4.116 4 C -0.111 4.111 5 C 0.075 3.925 6 O -0.597 6.597 7 C -0.117 4.117 8 C -0.119 4.119 9 C 0.087 3.913 10 N -0.624 5.624 11 C 0.720 3.280 12 O -0.621 6.621 13 N -0.728 5.728 14 C 0.144 3.856 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.271 1.271 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.406 0.594 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.399 0.601 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 4.885 24.510 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.090 3.910 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.003 4.003 6 O -0.406 6.406 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.036 4.036 10 N -0.361 5.361 11 C 0.422 3.578 12 O -0.503 6.503 13 N -0.386 5.386 14 C 0.015 3.985 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.195 1.195 25 H -0.196 1.196 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.233 0.767 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.688 4.416 24.290 24.745 hybrid contribution 0.411 0.281 -1.466 1.548 sum -1.277 4.697 22.824 23.337 Atomic orbital electron populations 1.22122 0.94166 1.02047 1.02676 1.21089 0.94134 0.91644 0.84108 1.21791 0.94183 0.96408 1.03084 1.21439 0.95403 0.96143 1.01840 1.22239 0.80412 0.97294 1.00309 1.86443 1.20816 1.36053 1.97282 1.22838 1.03082 0.94538 0.95042 1.22726 1.02684 0.97253 0.93047 1.22529 0.94988 0.88297 0.97780 1.47678 1.53438 1.32311 1.02708 1.15468 0.80611 0.81495 0.80210 1.90837 1.40938 1.35119 1.83365 1.44799 1.49153 1.40452 1.04193 1.20542 0.99597 0.98150 0.80182 1.20391 0.86620 0.87446 0.83509 1.90464 1.44928 1.39847 1.75963 1.41831 1.40116 1.33043 1.04377 1.19780 1.23363 1.15411 0.88076 0.89607 1.26147 0.98089 0.98544 0.98347 1.69694 1.37953 1.33542 1.14428 0.84797 0.77864 0.77762 0.77457 1.19424 1.19530 1.19582 0.92676 0.89383 0.93909 0.93388 0.88136 0.89933 0.94815 0.94777 0.91114 0.75433 0.87511 0.89056 0.90295 0.87504 0.91538 0.91342 0.75656 0.89456 0.89206 0.76726 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.36 71.98 0.60 -2.51 16 2 C 0.17 3.47 0.54 3.95 0.00 3.47 16 3 C -0.12 -2.33 4.15 30.59 0.13 -2.20 16 4 C -0.11 -2.36 5.16 30.59 0.16 -2.20 16 5 C 0.07 1.44 7.05 71.98 0.51 1.94 16 6 O -0.60 -12.60 13.66 -148.98 -2.03 -14.64 16 7 C -0.12 -1.41 5.84 31.79 0.19 -1.22 16 8 C -0.12 -1.53 7.09 31.99 0.23 -1.30 16 9 C 0.09 1.78 6.47 86.86 0.56 2.34 16 10 N -0.62 -16.22 1.89 -782.92 -1.48 -17.70 16 11 C 0.72 25.01 7.96 179.05 1.42 26.43 16 12 O -0.62 -24.82 14.05 -4.00 -0.06 -24.87 16 13 N -0.73 -26.71 5.49 -482.29 -2.65 -29.36 16 14 C 0.14 5.70 6.15 85.63 0.53 6.23 16 15 C 0.43 20.93 7.85 87.66 0.69 21.61 16 16 O -0.62 -33.48 15.24 -3.09 -0.05 -33.52 16 17 N -0.56 -28.91 5.29 -306.98 -1.62 -30.54 16 18 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 19 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 20 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 21 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 22 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.19 6.58 -2.39 -0.02 1.17 16 29 H 0.05 1.29 7.19 -2.39 -0.02 1.27 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.50 6.23 -2.39 -0.01 1.49 16 32 H 0.03 0.96 7.45 -2.39 -0.02 0.95 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.40 4.51 9.12 -74.06 -0.68 3.83 16 36 H 0.11 0.83 7.83 -2.39 -0.02 0.81 16 37 H 0.09 0.95 5.96 -2.39 -0.01 0.94 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 1.48 7.52 -2.39 -0.02 1.46 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.41 14.87 6.05 -92.71 -0.56 14.31 16 43 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 46 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -73.09 370.05 -0.24 -73.33 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -0.95 Total: 47.70 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 6.29 Total: 34.35 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.47 Total: -126.72 kcal Atomic # 8 Polarization: -70.89 SS G_CDS: -2.14 Total: -73.03 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -73.09 -0.24 -73.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.444 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds