Wall clock time and date at job start Fri Apr 10 2020 18:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00099 * 2 1 4 4 C 1.53008 * 109.20154 * 304.42603 * 3 2 1 5 5 C 1.50122 * 109.20920 * 185.06891 * 3 2 1 6 6 C 1.52530 * 105.41595 * 337.33782 * 5 3 2 7 7 C 1.46236 * 114.27434 * 270.59422 * 6 5 3 8 8 N 1.50175 * 107.53274 * 58.40894 * 7 6 5 9 9 C 1.34771 * 120.53663 * 109.56593 * 8 7 6 10 10 O 1.21587 * 120.00061 * 355.10511 * 9 8 7 11 11 N 1.34773 * 120.00104 * 174.83435 * 9 8 7 12 12 C 1.46503 * 120.00162 * 185.11336 * 11 9 8 13 13 C 1.50705 * 109.47082 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99684 * 0.02562 * 13 12 11 15 15 N 1.34768 * 119.99971 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00213 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99824 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00417 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99929 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00262 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46866 * 90.00036 * 20 18 16 22 22 H 1.48502 * 109.47013 * 210.00120 * 20 18 16 23 23 H 1.48499 * 109.46713 * 330.00185 * 20 18 16 24 24 C 1.43430 * 118.92149 * 289.83795 * 8 7 6 25 25 C 1.54400 * 116.38973 * 91.45983 * 24 8 7 26 26 H 1.09000 * 109.46761 * 175.07958 * 1 2 3 27 27 H 1.09004 * 109.46689 * 295.07713 * 1 2 3 28 28 H 1.08994 * 109.47251 * 55.08007 * 1 2 3 29 29 H 1.09003 * 109.47068 * 300.64269 * 4 3 2 30 30 H 1.09007 * 109.46917 * 60.64063 * 4 3 2 31 31 H 1.08999 * 109.46687 * 180.64222 * 4 3 2 32 32 H 1.08996 * 110.25077 * 218.36314 * 5 3 2 33 33 H 1.09001 * 110.25333 * 96.30994 * 5 3 2 34 34 H 1.08997 * 108.52187 * 149.35266 * 6 5 3 35 35 H 1.08997 * 108.39648 * 31.74879 * 6 5 3 36 36 H 1.08997 * 109.84473 * 298.89790 * 7 6 5 37 37 H 1.09005 * 109.84397 * 177.91534 * 7 6 5 38 38 H 0.96998 * 119.99758 * 5.11283 * 11 9 8 39 39 H 1.08999 * 109.47034 * 299.99642 * 12 11 9 40 40 H 1.09000 * 109.46932 * 60.00428 * 12 11 9 41 41 H 0.97006 * 120.00067 * 0.02562 * 15 13 12 42 42 H 0.96994 * 119.99965 * 180.02562 * 19 18 16 43 43 H 1.09005 * 108.15282 * 213.03121 * 24 8 7 44 44 H 1.08990 * 108.16223 * 329.59803 * 24 8 7 45 45 H 1.09003 * 109.44290 * 198.43624 * 25 24 8 46 46 H 1.08996 * 109.24068 * 78.73089 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4687 2.0974 -1.1919 5 6 3.5012 1.1823 -0.1253 6 6 3.8346 -0.2228 0.3658 7 6 4.0955 -0.3116 1.8020 8 7 2.8722 0.1880 2.5157 9 6 2.0793 -0.6647 3.1944 10 8 2.3009 -1.8596 3.1592 11 7 1.0441 -0.1923 3.9166 12 6 0.2507 -1.1051 4.7434 13 6 -0.8369 -0.3318 5.4436 14 8 -0.9395 0.8641 5.2687 15 7 -1.6961 -0.9691 6.2632 16 6 -2.6859 -0.2657 6.8997 17 1 -2.7768 0.7992 6.7447 18 6 -3.5715 -0.9227 7.7452 19 7 -3.4606 -2.2185 7.9343 20 14 -4.9197 0.0358 8.6131 21 1 -6.1367 0.0585 7.7626 22 1 -5.2340 -0.6158 9.9099 23 1 -4.4598 1.4267 8.8565 24 6 2.5582 1.5863 2.4583 25 6 1.6265 2.0340 1.3113 26 1 -0.3633 -1.0239 -0.0881 27 1 -0.3633 0.4356 0.9308 28 1 -0.3633 0.5882 -0.8426 29 1 1.7162 1.5766 -2.1169 30 1 0.3860 2.1894 -1.1052 31 1 1.9181 3.0904 -1.2026 32 1 3.9950 1.9271 0.4988 33 1 3.8034 1.2998 -1.1659 34 1 4.7163 -0.5762 -0.1688 35 1 2.9985 -0.8790 0.1244 36 1 4.9540 0.3079 2.0611 37 1 4.2886 -1.3478 2.0796 38 1 0.8244 0.7521 3.8889 39 1 -0.1974 -1.8715 4.1111 40 1 0.8955 -1.5769 5.4849 41 1 -1.6143 -1.9256 6.4028 42 1 -4.0790 -2.6772 8.5242 43 1 2.0882 1.8678 3.4006 44 1 3.4924 2.1410 2.3718 45 1 1.7198 3.1104 1.1672 46 1 0.5958 1.7921 1.5706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377052546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:00 Heat of formation + Delta-G solvation = -93.023155 kcal Electronic energy + Delta-G solvation = -27931.635418 eV Core-core repulsion = 24050.288700 eV Total energy + Delta-G solvation = -3881.346718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77814 -39.16924 -38.12274 -36.20073 -34.49359 -33.87068 -33.23524 -32.58578 -31.34023 -28.96416 -27.85657 -26.99209 -25.71864 -24.43920 -23.81793 -21.87210 -19.98100 -19.58304 -19.21565 -18.16911 -17.67096 -16.73912 -16.24430 -15.83109 -15.72312 -15.27208 -15.13685 -14.79968 -14.49081 -14.32779 -14.17354 -13.77619 -13.57771 -13.41349 -13.15594 -13.02110 -12.72173 -12.36310 -12.22202 -12.06856 -11.91235 -11.62025 -11.59101 -11.47649 -11.25533 -11.11499 -11.02273 -10.51337 -10.45259 -10.30545 -10.25363 -9.73500 -9.61854 -9.47158 -8.76533 -8.59251 -8.32121 -8.07775 -6.49652 -3.91620 2.82959 3.12441 3.22571 3.27914 3.53304 3.73172 3.78354 4.07401 4.25903 4.47327 4.57879 4.73835 4.87097 4.94855 4.98437 5.07545 5.19248 5.19859 5.30557 5.31458 5.42057 5.45570 5.50916 5.54261 5.60087 5.70854 5.78445 5.80545 5.91394 5.92079 6.01124 6.04283 6.07237 6.12575 6.17175 6.55889 6.71366 6.88281 7.22528 7.25380 7.47423 7.94569 8.33754 8.47682 8.94373 9.06572 9.42087 9.90076 10.67321 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.003154 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.787865 B = 8876.236215 C = 9373.040358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.360 6.360 3 C 0.116 3.884 4 C -0.179 4.179 5 C -0.104 4.104 6 C -0.151 4.151 7 C 0.144 3.856 8 N -0.618 5.618 9 C 0.714 3.286 10 O -0.597 6.597 11 N -0.727 5.727 12 C 0.128 3.872 13 C 0.430 3.570 14 O -0.599 6.599 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.114 3.886 25 C -0.168 4.168 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.405 0.595 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.047 6.789 -16.006 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.280 6.280 3 C 0.076 3.924 4 C -0.237 4.237 5 C -0.141 4.141 6 C -0.189 4.189 7 C 0.022 3.978 8 N -0.355 5.355 9 C 0.416 3.584 10 O -0.476 6.476 11 N -0.386 5.386 12 C 0.000 4.000 13 C 0.216 3.784 14 O -0.486 6.486 15 N -0.185 5.185 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.012 4.012 25 C -0.207 4.207 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.243 0.757 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.116 6.389 -15.956 21.620 hybrid contribution -1.195 0.607 0.495 1.428 sum 11.921 6.996 -15.461 20.739 Atomic orbital electron populations 1.22831 0.82276 1.02493 1.00071 1.88090 1.18738 1.26283 1.94841 1.21086 0.94596 0.83431 0.93253 1.22541 1.01871 1.00685 0.98585 1.21163 0.93113 0.98262 1.01586 1.20708 1.03317 0.98534 0.96339 1.20744 0.84841 1.01263 0.90921 1.47061 1.26692 1.06829 1.54927 1.15702 0.79500 0.84850 0.78397 1.90866 1.74158 1.13681 1.68898 1.44913 1.32060 1.12895 1.48689 1.20757 0.92919 0.92052 0.94315 1.19793 0.85535 0.88323 0.84788 1.90478 1.75387 1.15070 1.67642 1.41788 1.26681 1.11021 1.38965 1.19715 1.06462 0.94702 1.22508 0.87743 1.25319 0.99042 0.95808 0.97561 1.69618 1.38270 1.07933 1.37677 0.85823 0.80365 0.79468 0.78427 1.20302 1.20810 1.19345 1.20808 0.99544 0.82684 0.98115 1.23330 1.01357 1.00461 0.95590 0.90030 0.93676 0.94040 0.91914 0.92141 0.91594 0.90687 0.91047 0.91990 0.87817 0.91728 0.88849 0.75656 0.90137 0.90255 0.77023 0.91616 0.91300 0.90999 0.89914 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.26 101.05 1.04 1.27 16 2 O -0.36 -4.53 6.98 -35.23 -0.25 -4.78 16 3 C 0.12 1.14 0.68 -91.08 -0.06 1.08 16 4 C -0.18 -1.48 7.72 37.16 0.29 -1.19 16 5 C -0.10 -0.88 5.27 -28.40 -0.15 -1.03 16 6 C -0.15 -1.53 5.06 -30.19 -0.15 -1.68 16 7 C 0.14 1.60 5.99 -5.20 -0.03 1.57 16 8 N -0.62 -8.26 2.22 -181.61 -0.40 -8.66 16 9 C 0.71 12.43 8.29 -86.93 -0.72 11.70 16 10 O -0.60 -12.27 15.85 5.29 0.08 -12.19 16 11 N -0.73 -12.98 5.38 -66.41 -0.36 -13.33 16 12 C 0.13 2.48 6.16 -5.19 -0.03 2.45 16 13 C 0.43 10.00 7.85 -10.99 -0.09 9.92 16 14 O -0.60 -15.38 15.24 5.55 0.08 -15.30 16 15 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 16 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -24.03 13.05 55.50 0.72 -23.30 16 20 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C 0.11 1.25 4.67 -4.93 -0.02 1.23 16 25 C -0.17 -1.70 5.33 -25.03 -0.13 -1.84 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.60 6.34 -51.93 -0.33 0.27 16 28 H 0.04 0.42 6.07 -51.93 -0.32 0.10 16 29 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.06 0.52 6.39 -51.93 -0.33 0.18 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.55 6.28 -51.93 -0.33 0.22 16 33 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 1.37 5.43 -51.96 -0.28 1.09 16 36 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 37 H 0.09 1.20 7.16 -51.93 -0.37 0.83 16 38 H 0.40 7.12 5.22 -40.82 -0.21 6.91 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.07 0.83 6.31 -51.93 -0.33 0.50 16 44 H 0.07 0.62 6.89 -51.93 -0.36 0.26 16 45 H 0.08 0.67 7.98 -51.93 -0.41 0.26 16 46 H 0.07 0.91 5.96 -51.93 -0.31 0.60 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -31.92 355.39 -6.92 -38.83 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -6.77 Total: 16.01 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -0.31 Total: 15.61 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.09 Total: -59.12 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.08 Total: -32.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.92 -6.92 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377052546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.192 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds