Wall clock time and date at job start Fri Apr 10 2020 18:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00099 * 2 1 4 4 C 1.53008 * 109.20154 * 304.42603 * 3 2 1 5 5 C 1.50122 * 109.20920 * 185.06891 * 3 2 1 6 6 C 1.52530 * 105.41595 * 337.33782 * 5 3 2 7 7 C 1.46236 * 114.27434 * 270.59422 * 6 5 3 8 8 N 1.50175 * 107.53274 * 58.40894 * 7 6 5 9 9 C 1.34771 * 120.53663 * 109.56593 * 8 7 6 10 10 O 1.21587 * 120.00061 * 355.10511 * 9 8 7 11 11 N 1.34773 * 120.00104 * 174.83435 * 9 8 7 12 12 C 1.46503 * 120.00162 * 185.11336 * 11 9 8 13 13 C 1.50705 * 109.47082 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99684 * 0.02562 * 13 12 11 15 15 N 1.34768 * 119.99971 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00213 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99824 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00417 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99929 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00262 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46866 * 90.00036 * 20 18 16 22 22 H 1.48502 * 109.47013 * 210.00120 * 20 18 16 23 23 H 1.48499 * 109.46713 * 330.00185 * 20 18 16 24 24 C 1.43430 * 118.92149 * 289.83795 * 8 7 6 25 25 C 1.54400 * 116.38973 * 91.45983 * 24 8 7 26 26 H 1.09000 * 109.46761 * 175.07958 * 1 2 3 27 27 H 1.09004 * 109.46689 * 295.07713 * 1 2 3 28 28 H 1.08994 * 109.47251 * 55.08007 * 1 2 3 29 29 H 1.09003 * 109.47068 * 300.64269 * 4 3 2 30 30 H 1.09007 * 109.46917 * 60.64063 * 4 3 2 31 31 H 1.08999 * 109.46687 * 180.64222 * 4 3 2 32 32 H 1.08996 * 110.25077 * 218.36314 * 5 3 2 33 33 H 1.09001 * 110.25333 * 96.30994 * 5 3 2 34 34 H 1.08997 * 108.52187 * 149.35266 * 6 5 3 35 35 H 1.08997 * 108.39648 * 31.74879 * 6 5 3 36 36 H 1.08997 * 109.84473 * 298.89790 * 7 6 5 37 37 H 1.09005 * 109.84397 * 177.91534 * 7 6 5 38 38 H 0.96998 * 119.99758 * 5.11283 * 11 9 8 39 39 H 1.08999 * 109.47034 * 299.99642 * 12 11 9 40 40 H 1.09000 * 109.46932 * 60.00428 * 12 11 9 41 41 H 0.97006 * 120.00067 * 0.02562 * 15 13 12 42 42 H 0.96994 * 119.99965 * 180.02562 * 19 18 16 43 43 H 1.09005 * 108.15282 * 213.03121 * 24 8 7 44 44 H 1.08990 * 108.16223 * 329.59803 * 24 8 7 45 45 H 1.09003 * 109.44290 * 198.43624 * 25 24 8 46 46 H 1.08996 * 109.24068 * 78.73089 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4687 2.0974 -1.1919 5 6 3.5012 1.1823 -0.1253 6 6 3.8346 -0.2228 0.3658 7 6 4.0955 -0.3116 1.8020 8 7 2.8722 0.1880 2.5157 9 6 2.0793 -0.6647 3.1944 10 8 2.3009 -1.8596 3.1592 11 7 1.0441 -0.1923 3.9166 12 6 0.2507 -1.1051 4.7434 13 6 -0.8369 -0.3318 5.4436 14 8 -0.9395 0.8641 5.2687 15 7 -1.6961 -0.9691 6.2632 16 6 -2.6859 -0.2657 6.8997 17 1 -2.7768 0.7992 6.7447 18 6 -3.5715 -0.9227 7.7452 19 7 -3.4606 -2.2185 7.9343 20 14 -4.9197 0.0358 8.6131 21 1 -6.1367 0.0585 7.7626 22 1 -5.2340 -0.6158 9.9099 23 1 -4.4598 1.4267 8.8565 24 6 2.5582 1.5863 2.4583 25 6 1.6265 2.0340 1.3113 26 1 -0.3633 -1.0239 -0.0881 27 1 -0.3633 0.4356 0.9308 28 1 -0.3633 0.5882 -0.8426 29 1 1.7162 1.5766 -2.1169 30 1 0.3860 2.1894 -1.1052 31 1 1.9181 3.0904 -1.2026 32 1 3.9950 1.9271 0.4988 33 1 3.8034 1.2998 -1.1659 34 1 4.7163 -0.5762 -0.1688 35 1 2.9985 -0.8790 0.1244 36 1 4.9540 0.3079 2.0611 37 1 4.2886 -1.3478 2.0796 38 1 0.8244 0.7521 3.8889 39 1 -0.1974 -1.8715 4.1111 40 1 0.8955 -1.5769 5.4849 41 1 -1.6143 -1.9256 6.4028 42 1 -4.0790 -2.6772 8.5242 43 1 2.0882 1.8678 3.4006 44 1 3.4924 2.1410 2.3718 45 1 1.7198 3.1104 1.1672 46 1 0.5958 1.7921 1.5706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377052546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:00 Heat of formation + Delta-G solvation = -115.376112 kcal Electronic energy + Delta-G solvation = -27932.604715 eV Core-core repulsion = 24050.288700 eV Total energy + Delta-G solvation = -3882.316015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83003 -40.51714 -39.79117 -37.27178 -36.26165 -35.46171 -34.25063 -33.56077 -33.33018 -29.90696 -29.17083 -28.12707 -26.78484 -26.12716 -24.75553 -22.88022 -21.36825 -20.95873 -20.45357 -20.04228 -18.94384 -17.77886 -17.47006 -17.14737 -16.93944 -16.63051 -16.54966 -16.15709 -15.95528 -15.75148 -15.44533 -15.09829 -14.90233 -14.61837 -14.14943 -13.96009 -13.79683 -13.65063 -13.54890 -13.41563 -13.07667 -12.95019 -12.90452 -12.46173 -12.45951 -12.32253 -12.18113 -12.12413 -11.81336 -11.57516 -11.27453 -11.17035 -11.00472 -10.56084 -10.36339 -10.20996 -10.09286 -9.43693 -8.51205 -6.01649 1.35972 1.41958 1.54097 1.62661 1.88959 2.19268 2.28150 2.91302 2.91665 3.15854 3.18577 3.69542 3.84239 3.95273 4.10333 4.17688 4.20794 4.26844 4.37807 4.40496 4.44331 4.46824 4.51778 4.60418 4.66627 4.72949 4.76635 4.83335 4.90135 4.99746 5.04576 5.06481 5.21672 5.34789 5.35598 5.39101 5.42540 5.63060 5.84522 5.91711 5.99189 6.40424 6.47437 7.02092 7.02778 7.42171 7.59164 7.93423 8.65822 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.003154 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.787865 B = 8876.236215 C = 9373.040358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.378 6.378 3 C 0.107 3.893 4 C -0.175 4.175 5 C -0.098 4.098 6 C -0.147 4.147 7 C 0.141 3.859 8 N -0.610 5.610 9 C 0.710 3.290 10 O -0.634 6.634 11 N -0.727 5.727 12 C 0.142 3.858 13 C 0.435 3.565 14 O -0.623 6.623 15 N -0.558 5.558 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.107 3.893 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.406 0.594 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.398 0.602 42 H 0.280 0.720 43 H 0.055 0.945 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.192 8.462 -16.864 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.068 3.932 4 C -0.232 4.232 5 C -0.135 4.135 6 C -0.184 4.184 7 C 0.020 3.980 8 N -0.346 5.346 9 C 0.411 3.589 10 O -0.516 6.516 11 N -0.386 5.386 12 C 0.013 3.987 13 C 0.222 3.778 14 O -0.511 6.511 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.193 1.193 24 C -0.018 4.018 25 C -0.204 4.204 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.245 0.755 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.232 0.768 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.294 8.083 -16.845 23.524 hybrid contribution -1.475 0.098 0.705 1.638 sum 12.819 8.181 -16.140 22.175 Atomic orbital electron populations 1.22752 0.82696 1.02083 0.99833 1.88116 1.18512 1.28243 1.94922 1.21354 0.95656 0.82503 0.93660 1.22498 1.01476 1.01480 0.97729 1.21216 0.91871 0.97419 1.03005 1.20609 1.02863 0.99288 0.95687 1.20973 0.84819 1.00756 0.91416 1.47187 1.26311 1.07374 1.53695 1.15881 0.79534 0.84857 0.78597 1.90834 1.75103 1.15417 1.70254 1.44845 1.32324 1.12615 1.48844 1.20544 0.91978 0.91731 0.94468 1.20357 0.85486 0.88145 0.83820 1.90453 1.76075 1.16364 1.68214 1.41830 1.26942 1.11079 1.39523 1.19741 1.08204 0.94324 1.24334 0.89527 1.26148 1.00684 0.96742 0.97569 1.69688 1.39032 1.08992 1.37940 0.84859 0.77455 0.78026 0.77586 1.19548 1.19645 1.19348 1.21039 1.01439 0.81392 0.97932 1.23334 0.99546 1.02091 0.95436 0.90979 0.95600 0.92173 0.91737 0.92898 0.89511 0.88619 0.89377 0.89875 0.91173 0.88178 0.91145 0.75475 0.89736 0.89328 0.76772 0.91063 0.92676 0.87414 0.87227 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.26 113.37 1.16 1.72 16 2 O -0.38 -9.43 6.98 -148.98 -1.04 -10.47 16 3 C 0.11 1.89 0.68 -11.09 -0.01 1.89 16 4 C -0.17 -2.43 7.72 71.98 0.56 -1.88 16 5 C -0.10 -1.32 5.27 29.51 0.16 -1.16 16 6 C -0.15 -2.65 5.06 28.36 0.14 -2.51 16 7 C 0.14 2.89 5.99 83.58 0.50 3.39 16 8 N -0.61 -15.71 2.22 -846.74 -1.88 -17.59 16 9 C 0.71 24.97 8.29 179.06 1.48 26.45 16 10 O -0.63 -26.66 15.85 -3.99 -0.06 -26.72 16 11 N -0.73 -26.47 5.38 -482.29 -2.59 -29.06 16 12 C 0.14 5.61 6.16 85.63 0.53 6.14 16 13 C 0.43 20.74 7.85 87.66 0.69 21.43 16 14 O -0.62 -32.76 15.24 -3.07 -0.05 -32.80 16 15 N -0.56 -28.66 5.29 -306.99 -1.62 -30.29 16 16 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 17 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 18 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 19 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 20 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.11 2.14 4.67 87.42 0.41 2.54 16 25 C -0.16 -3.06 5.33 31.70 0.17 -2.89 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.03 0.72 6.34 -2.39 -0.02 0.71 16 28 H 0.06 1.21 6.07 -2.39 -0.01 1.20 16 29 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 30 H 0.05 0.81 6.39 -2.38 -0.02 0.80 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.92 6.28 -2.39 -0.02 0.91 16 33 H 0.09 0.94 7.70 -2.39 -0.02 0.92 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.82 5.43 -2.79 -0.02 1.81 16 36 H 0.10 1.37 8.13 -2.39 -0.02 1.36 16 37 H 0.07 1.79 7.16 -2.38 -0.02 1.78 16 38 H 0.41 14.60 5.22 -92.71 -0.48 14.12 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.40 19.77 7.90 -92.70 -0.73 19.04 16 42 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.05 1.28 6.31 -2.38 -0.02 1.26 16 44 H 0.11 1.42 6.89 -2.39 -0.02 1.40 16 45 H 0.11 1.43 7.98 -2.39 -0.02 1.41 16 46 H 0.05 1.17 5.96 -2.39 -0.01 1.16 16 Total: -1.00 -70.30 355.39 1.94 -68.36 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -0.20 Total: 46.45 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 7.07 Total: 37.08 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.81 Total: -125.89 kcal Atomic # 8 Polarization: -68.84 SS G_CDS: -1.15 Total: -69.99 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -70.30 1.94 -68.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377052546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.016 kcal (2) G-P(sol) polarization free energy of solvation -70.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds