Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99686 * 2 1 4 4 C 1.52999 * 109.51244 * 305.65639 * 3 2 1 5 5 C 1.52574 * 109.48911 * 65.71464 * 3 2 1 6 6 C 1.47096 * 114.32615 * 34.94709 * 5 3 2 7 7 C 1.54305 * 110.29743 * 62.72689 * 6 5 3 8 8 N 1.44576 * 109.91153 * 288.76402 * 7 6 5 9 9 C 1.34782 * 118.64196 * 270.85116 * 8 7 6 10 10 O 1.21583 * 120.00016 * 179.45934 * 9 8 7 11 11 N 1.34783 * 119.99712 * 359.73090 * 9 8 7 12 12 C 1.46498 * 119.99658 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47023 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99595 * 0.02562 * 13 12 11 15 15 N 1.34768 * 119.99810 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99643 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00216 * 359.97438 * 16 15 13 18 18 C 1.38959 * 119.99937 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99826 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47112 * 60.00076 * 20 18 16 22 22 H 1.48502 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46983 * 300.00087 * 20 18 16 24 24 C 1.47605 * 122.71575 * 90.57554 * 8 7 6 25 25 C 1.50884 * 109.49228 * 185.59470 * 3 2 1 26 26 H 1.08997 * 109.47203 * 306.46061 * 1 2 3 27 27 H 1.08997 * 109.47501 * 66.46496 * 1 2 3 28 28 H 1.09007 * 109.46393 * 186.45988 * 1 2 3 29 29 H 1.08997 * 109.47266 * 299.94446 * 4 3 2 30 30 H 1.09008 * 109.46994 * 59.93716 * 4 3 2 31 31 H 1.09001 * 109.47508 * 179.97438 * 4 3 2 32 32 H 1.08993 * 108.51288 * 156.19665 * 5 3 2 33 33 H 1.08999 * 108.51532 * 273.84715 * 5 3 2 34 34 H 1.08993 * 109.32642 * 183.06708 * 6 5 3 35 35 H 1.09001 * 109.32824 * 302.71466 * 6 5 3 36 36 H 1.08997 * 109.18934 * 168.68887 * 7 6 5 37 37 H 1.09002 * 109.40193 * 48.96220 * 7 6 5 38 38 H 0.97000 * 119.99713 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47650 * 300.00846 * 12 11 9 40 40 H 1.09009 * 109.46901 * 60.00639 * 12 11 9 41 41 H 0.97005 * 120.00498 * 359.97438 * 15 13 12 42 42 H 0.96994 * 120.00011 * 179.97438 * 19 18 16 43 43 H 1.08994 * 108.95021 * 78.83093 * 24 8 7 44 44 H 1.09005 * 108.94742 * 197.55034 * 24 8 7 45 45 H 1.08993 * 109.36714 * 211.73640 * 25 3 2 46 46 H 1.08994 * 109.26095 * 92.04931 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4500 2.1143 -1.1718 5 6 1.6768 2.0111 1.3110 6 6 1.6248 1.1218 2.4816 7 6 3.0072 0.4830 2.7303 8 7 3.2913 -0.4921 1.7014 9 6 2.8954 -1.7663 1.8919 10 8 3.1128 -2.6045 1.0384 11 7 2.2536 -2.1101 3.0261 12 6 1.8227 -3.4950 3.2329 13 6 1.1344 -3.6128 4.5684 14 8 1.0152 -2.6360 5.2774 15 7 0.6516 -4.8036 4.9748 16 6 0.0249 -4.9107 6.1895 17 1 -0.0813 -4.0409 6.8209 18 6 -0.4735 -6.1383 6.6083 19 7 -0.3437 -7.1967 5.8403 20 14 -1.3279 -6.2841 8.2631 21 1 -2.5119 -5.3883 8.2893 22 1 -1.7638 -7.6880 8.4731 23 1 -0.3864 -5.8919 9.3425 24 6 3.9918 -0.1487 0.4484 25 6 3.5082 1.1898 -0.1387 26 1 -0.3633 0.6107 0.8265 27 1 -0.3634 0.4103 -0.9421 28 1 -0.3632 -1.0213 0.1156 29 1 1.6901 1.6110 -2.1083 30 1 0.3678 2.1977 -1.0712 31 1 1.8934 3.1100 -1.1709 32 1 2.4296 2.7782 1.4924 33 1 0.7071 2.4976 1.2054 34 1 1.3285 1.6970 3.3587 35 1 0.8936 0.3334 2.3035 36 1 3.0056 -0.0067 3.7041 37 1 3.7725 1.2590 2.7161 38 1 2.0763 -1.4405 3.7051 39 1 1.1308 -3.7823 2.4412 40 1 2.6918 -4.1528 3.2123 41 1 0.7466 -5.5848 4.4075 42 1 -0.6913 -8.0537 6.1328 43 1 5.0613 -0.0819 0.6477 44 1 3.8170 -0.9381 -0.2827 45 1 3.9851 2.0118 0.3949 46 1 3.7765 1.2396 -1.1939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377052547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -99.019042 kcal Electronic energy + Delta-G solvation = -27958.452462 eV Core-core repulsion = 24076.845742 eV Total energy + Delta-G solvation = -3881.606720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76190 -39.16482 -38.07403 -35.94044 -34.44331 -33.76736 -33.32297 -32.72537 -31.31867 -29.25478 -27.32722 -26.75794 -26.20030 -24.48627 -23.50542 -21.87168 -20.02294 -19.54790 -19.17167 -18.18119 -17.66269 -16.73826 -16.16559 -15.87498 -15.66790 -15.17777 -15.06126 -14.75585 -14.44810 -14.36946 -14.00576 -13.85172 -13.67890 -13.35813 -13.14955 -12.73235 -12.62804 -12.37188 -12.33308 -12.03762 -11.92686 -11.73664 -11.59970 -11.58993 -11.09532 -11.07205 -10.95611 -10.81003 -10.48208 -10.41141 -10.27398 -9.65671 -9.58196 -9.53331 -8.67382 -8.55429 -8.18725 -8.04771 -6.47084 -3.88959 2.95736 3.16348 3.23549 3.27582 3.64500 3.74675 3.82876 4.10242 4.29571 4.46833 4.52325 4.66216 4.85740 4.90436 4.98271 5.10615 5.21707 5.22294 5.27368 5.29913 5.36950 5.44288 5.47198 5.51236 5.62816 5.70705 5.74942 5.81770 5.86505 5.90453 6.00435 6.05142 6.11989 6.13485 6.16804 6.26593 6.83159 6.95712 7.24458 7.28614 7.49621 7.97279 8.41167 8.50879 9.04784 9.09345 9.45194 9.93411 10.69918 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.003029 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.430937 B = 9240.733907 C = 9431.672888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.118 3.882 4 C -0.176 4.176 5 C -0.137 4.137 6 C -0.142 4.142 7 C 0.114 3.886 8 N -0.610 5.610 9 C 0.713 3.287 10 O -0.597 6.597 11 N -0.728 5.728 12 C 0.129 3.871 13 C 0.431 3.569 14 O -0.599 6.599 15 N -0.551 5.551 16 C -0.305 4.305 17 H 0.104 0.896 18 C 0.025 3.975 19 N -0.896 5.896 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.145 3.855 25 C -0.121 4.121 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.405 0.595 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 18.251 -12.196 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.078 3.922 4 C -0.234 4.234 5 C -0.174 4.174 6 C -0.181 4.181 7 C -0.011 4.011 8 N -0.346 5.346 9 C 0.414 3.586 10 O -0.476 6.476 11 N -0.387 5.387 12 C 0.000 4.000 13 C 0.216 3.784 14 O -0.485 6.485 15 N -0.185 5.185 16 C -0.434 4.434 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.536 5.536 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.022 3.978 25 C -0.159 4.159 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.244 0.756 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.437 17.899 -12.296 22.386 hybrid contribution -0.867 0.060 0.814 1.191 sum 4.570 17.959 -11.482 21.800 Atomic orbital electron populations 1.22738 0.82246 1.02660 0.99373 1.88197 1.18611 1.25614 1.94683 1.20904 0.93637 0.84179 0.93512 1.22501 1.01533 1.00542 0.98798 1.21034 1.02128 0.98992 0.95283 1.21192 0.98999 1.00136 0.97744 1.21313 0.96254 0.92383 0.91110 1.46532 1.61731 1.06976 1.19359 1.15710 0.78242 0.82568 0.82046 1.90849 1.62800 1.49570 1.44409 1.44953 1.61740 1.11587 1.20441 1.20733 0.99542 0.82960 0.96754 1.19815 0.85460 0.84690 0.88399 1.90477 1.63535 1.37405 1.57105 1.41782 1.49573 1.08577 1.18614 1.19672 1.32629 0.96341 0.94769 0.87799 1.25312 0.97775 0.94860 0.99779 1.69609 1.45894 1.00396 1.37686 0.85886 0.79568 0.77189 0.81387 1.19830 1.20891 1.19820 1.21288 0.93650 0.96929 0.85891 1.21908 0.93423 0.98642 1.01963 0.94034 0.94459 0.89942 0.91713 0.92205 0.91692 0.91521 0.92361 0.90853 0.90580 0.90545 0.90780 0.75591 0.90277 0.90286 0.77033 0.91591 0.92836 0.88772 0.90719 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.40 101.05 0.95 1.25 16 2 O -0.35 -4.50 6.84 -35.23 -0.24 -4.74 16 3 C 0.12 1.12 0.69 -91.90 -0.06 1.05 16 4 C -0.18 -1.36 7.70 37.16 0.29 -1.08 16 5 C -0.14 -1.20 3.70 -29.78 -0.11 -1.31 16 6 C -0.14 -1.50 5.37 -28.88 -0.16 -1.65 16 7 C 0.11 1.27 5.10 -4.39 -0.02 1.25 16 8 N -0.61 -8.27 1.74 -178.63 -0.31 -8.58 16 9 C 0.71 12.55 7.58 -86.91 -0.66 11.90 16 10 O -0.60 -12.44 15.62 5.29 0.08 -12.36 16 11 N -0.73 -13.14 5.36 -66.41 -0.36 -13.50 16 12 C 0.13 2.52 6.15 -5.19 -0.03 2.49 16 13 C 0.43 10.10 7.85 -10.99 -0.09 10.02 16 14 O -0.60 -15.47 15.24 5.54 0.08 -15.38 16 15 N -0.55 -13.89 5.29 -10.96 -0.06 -13.94 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 19 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 20 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.15 1.70 5.54 -2.94 -0.02 1.68 16 25 C -0.12 -1.04 5.19 -27.30 -0.14 -1.18 16 26 H 0.04 0.45 5.97 -51.93 -0.31 0.14 16 27 H 0.04 0.36 6.73 -51.93 -0.35 0.01 16 28 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.06 0.46 6.58 -51.92 -0.34 0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.49 7.36 -51.93 -0.38 0.11 16 33 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.00 5.88 -51.93 -0.31 0.69 16 36 H 0.08 0.93 6.22 -51.93 -0.32 0.61 16 37 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 38 H 0.40 7.18 5.05 -40.82 -0.21 6.97 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 41 H 0.40 9.66 7.90 -40.82 -0.32 9.33 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.34 6.92 -51.93 -0.36 0.98 16 45 H 0.07 0.52 7.32 -51.93 -0.38 0.14 16 46 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -32.28 355.07 -6.99 -39.27 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.95 Total: 15.18 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -0.29 Total: 16.49 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.00 Total: -59.48 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.07 Total: -32.48 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.28 -6.99 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377052547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.751 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds