Wall clock time and date at job start Fri Apr 10 2020 18:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99686 * 2 1 4 4 C 1.52999 * 109.51244 * 305.65639 * 3 2 1 5 5 C 1.52574 * 109.48911 * 65.71464 * 3 2 1 6 6 C 1.47096 * 114.32615 * 34.94709 * 5 3 2 7 7 C 1.54305 * 110.29743 * 62.72689 * 6 5 3 8 8 N 1.44576 * 109.91153 * 288.76402 * 7 6 5 9 9 C 1.34782 * 118.64196 * 270.85116 * 8 7 6 10 10 O 1.21583 * 120.00016 * 179.45934 * 9 8 7 11 11 N 1.34783 * 119.99712 * 359.73090 * 9 8 7 12 12 C 1.46498 * 119.99658 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47023 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99595 * 0.02562 * 13 12 11 15 15 N 1.34768 * 119.99810 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99643 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00216 * 359.97438 * 16 15 13 18 18 C 1.38959 * 119.99937 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99826 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47112 * 60.00076 * 20 18 16 22 22 H 1.48502 * 109.46978 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46983 * 300.00087 * 20 18 16 24 24 C 1.47605 * 122.71575 * 90.57554 * 8 7 6 25 25 C 1.50884 * 109.49228 * 185.59470 * 3 2 1 26 26 H 1.08997 * 109.47203 * 306.46061 * 1 2 3 27 27 H 1.08997 * 109.47501 * 66.46496 * 1 2 3 28 28 H 1.09007 * 109.46393 * 186.45988 * 1 2 3 29 29 H 1.08997 * 109.47266 * 299.94446 * 4 3 2 30 30 H 1.09008 * 109.46994 * 59.93716 * 4 3 2 31 31 H 1.09001 * 109.47508 * 179.97438 * 4 3 2 32 32 H 1.08993 * 108.51288 * 156.19665 * 5 3 2 33 33 H 1.08999 * 108.51532 * 273.84715 * 5 3 2 34 34 H 1.08993 * 109.32642 * 183.06708 * 6 5 3 35 35 H 1.09001 * 109.32824 * 302.71466 * 6 5 3 36 36 H 1.08997 * 109.18934 * 168.68887 * 7 6 5 37 37 H 1.09002 * 109.40193 * 48.96220 * 7 6 5 38 38 H 0.97000 * 119.99713 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47650 * 300.00846 * 12 11 9 40 40 H 1.09009 * 109.46901 * 60.00639 * 12 11 9 41 41 H 0.97005 * 120.00498 * 359.97438 * 15 13 12 42 42 H 0.96994 * 120.00011 * 179.97438 * 19 18 16 43 43 H 1.08994 * 108.95021 * 78.83093 * 24 8 7 44 44 H 1.09005 * 108.94742 * 197.55034 * 24 8 7 45 45 H 1.08993 * 109.36714 * 211.73640 * 25 3 2 46 46 H 1.08994 * 109.26095 * 92.04931 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4500 2.1143 -1.1718 5 6 1.6768 2.0111 1.3110 6 6 1.6248 1.1218 2.4816 7 6 3.0072 0.4830 2.7303 8 7 3.2913 -0.4921 1.7014 9 6 2.8954 -1.7663 1.8919 10 8 3.1128 -2.6045 1.0384 11 7 2.2536 -2.1101 3.0261 12 6 1.8227 -3.4950 3.2329 13 6 1.1344 -3.6128 4.5684 14 8 1.0152 -2.6360 5.2774 15 7 0.6516 -4.8036 4.9748 16 6 0.0249 -4.9107 6.1895 17 1 -0.0813 -4.0409 6.8209 18 6 -0.4735 -6.1383 6.6083 19 7 -0.3437 -7.1967 5.8403 20 14 -1.3279 -6.2841 8.2631 21 1 -2.5119 -5.3883 8.2893 22 1 -1.7638 -7.6880 8.4731 23 1 -0.3864 -5.8919 9.3425 24 6 3.9918 -0.1487 0.4484 25 6 3.5082 1.1898 -0.1387 26 1 -0.3633 0.6107 0.8265 27 1 -0.3634 0.4103 -0.9421 28 1 -0.3632 -1.0213 0.1156 29 1 1.6901 1.6110 -2.1083 30 1 0.3678 2.1977 -1.0712 31 1 1.8934 3.1100 -1.1709 32 1 2.4296 2.7782 1.4924 33 1 0.7071 2.4976 1.2054 34 1 1.3285 1.6970 3.3587 35 1 0.8936 0.3334 2.3035 36 1 3.0056 -0.0067 3.7041 37 1 3.7725 1.2590 2.7161 38 1 2.0763 -1.4405 3.7051 39 1 1.1308 -3.7823 2.4412 40 1 2.6918 -4.1528 3.2123 41 1 0.7466 -5.5848 4.4075 42 1 -0.6913 -8.0537 6.1328 43 1 5.0613 -0.0819 0.6477 44 1 3.8170 -0.9381 -0.2827 45 1 3.9851 2.0118 0.3949 46 1 3.7765 1.2396 -1.1939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377052547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:02 Heat of formation + Delta-G solvation = -121.415586 kcal Electronic energy + Delta-G solvation = -27959.423649 eV Core-core repulsion = 24076.845742 eV Total energy + Delta-G solvation = -3882.577907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81011 -40.49741 -39.76542 -37.02424 -36.24678 -35.36148 -34.26969 -33.68978 -33.33876 -30.22208 -28.78402 -27.70647 -27.10633 -26.32315 -24.38363 -22.93914 -21.35755 -20.89022 -20.41915 -20.04262 -19.04366 -17.82117 -17.40181 -17.06189 -16.88881 -16.53910 -16.40367 -16.29396 -15.93078 -15.64720 -15.36991 -15.06668 -14.87433 -14.55243 -14.29145 -13.93732 -13.56242 -13.52735 -13.46205 -13.30579 -13.14038 -13.03300 -12.88639 -12.60599 -12.50714 -12.46165 -12.13202 -11.92664 -11.73834 -11.60352 -11.55247 -11.23904 -10.99765 -10.53658 -10.36557 -10.16728 -10.07194 -9.30188 -8.49861 -6.00298 1.38643 1.42561 1.53647 1.70990 1.91142 2.28147 2.32275 2.93727 2.97440 3.17195 3.22079 3.77116 3.85658 3.89830 4.07416 4.08177 4.21886 4.32769 4.40371 4.43630 4.46932 4.48775 4.52675 4.62019 4.71587 4.76352 4.77860 4.86447 4.91278 4.97177 5.00703 5.12138 5.19862 5.29284 5.37422 5.38118 5.43926 5.45493 5.80365 5.93478 6.01900 6.48188 6.49123 7.03955 7.07568 7.44191 7.68307 7.95242 8.67035 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.003029 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.430937 B = 9240.733907 C = 9431.672888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.107 3.893 4 C -0.171 4.171 5 C -0.135 4.135 6 C -0.137 4.137 7 C 0.109 3.891 8 N -0.599 5.599 9 C 0.709 3.291 10 O -0.635 6.635 11 N -0.728 5.728 12 C 0.143 3.857 13 C 0.436 3.564 14 O -0.622 6.622 15 N -0.559 5.559 16 C -0.338 4.338 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.141 3.859 25 C -0.114 4.114 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.407 0.593 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.398 0.602 42 H 0.280 0.720 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 20.398 -12.175 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C 0.068 3.932 4 C -0.228 4.228 5 C -0.172 4.172 6 C -0.176 4.176 7 C -0.015 4.015 8 N -0.334 5.334 9 C 0.410 3.590 10 O -0.517 6.517 11 N -0.388 5.388 12 C 0.014 3.986 13 C 0.223 3.777 14 O -0.510 6.510 15 N -0.195 5.195 16 C -0.467 4.467 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.194 1.194 24 C 0.019 3.981 25 C -0.152 4.152 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.246 0.754 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.232 0.768 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.955 20.091 -12.293 24.295 hybrid contribution -0.977 -0.560 0.763 1.360 sum 4.978 19.531 -11.530 23.220 Atomic orbital electron populations 1.22665 0.82196 1.01462 1.00329 1.88165 1.18954 1.28022 1.94918 1.21201 0.94092 0.83216 0.94698 1.22444 1.01489 1.01214 0.97642 1.21018 1.03347 0.98905 0.93940 1.21144 0.97554 0.99637 0.99265 1.21532 0.97840 0.92447 0.89656 1.46615 1.60545 1.05806 1.20398 1.15884 0.78090 0.83737 0.81243 1.90818 1.64322 1.51128 1.45416 1.44882 1.62126 1.10822 1.20943 1.20514 0.99457 0.84348 0.94326 1.20366 0.84389 0.83786 0.89195 1.90451 1.64221 1.38081 1.58253 1.41828 1.50058 1.09179 1.18394 1.19720 1.34651 0.96507 0.95812 0.89485 1.26150 0.97766 0.94078 1.03164 1.69683 1.46098 1.00821 1.39125 0.84918 0.78428 0.77639 0.76938 1.19417 1.19652 1.19422 1.21450 0.94547 0.97753 0.84370 1.21950 0.92862 0.97383 1.02996 0.93682 0.92870 0.92207 0.92184 0.92402 0.89545 0.88916 0.91887 0.89644 0.93711 0.91879 0.87324 0.75355 0.89848 0.89544 0.76801 0.91075 0.91093 0.91967 0.87844 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.40 113.37 1.07 1.76 16 2 O -0.38 -9.61 6.84 -148.98 -1.02 -10.63 16 3 C 0.11 1.79 0.69 -11.62 -0.01 1.78 16 4 C -0.17 -2.18 7.70 71.98 0.55 -1.62 16 5 C -0.13 -1.97 3.70 28.62 0.11 -1.86 16 6 C -0.14 -2.67 5.37 29.20 0.16 -2.52 16 7 C 0.11 2.23 5.10 87.18 0.44 2.68 16 8 N -0.60 -15.74 1.74 -837.31 -1.46 -17.19 16 9 C 0.71 25.30 7.58 179.05 1.36 26.66 16 10 O -0.63 -27.14 15.62 -3.98 -0.06 -27.20 16 11 N -0.73 -26.80 5.36 -482.28 -2.59 -29.38 16 12 C 0.14 5.72 6.15 85.63 0.53 6.24 16 13 C 0.44 20.93 7.85 87.66 0.69 21.62 16 14 O -0.62 -32.84 15.24 -3.08 -0.05 -32.89 16 15 N -0.56 -28.91 5.29 -306.98 -1.62 -30.53 16 16 C -0.34 -18.89 9.68 84.04 0.81 -18.07 16 17 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 19 N -0.92 -49.56 13.05 21.67 0.28 -49.28 16 20 Si 1.00 42.14 29.55 68.60 2.03 44.16 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.14 3.09 5.54 86.49 0.48 3.57 16 25 C -0.11 -1.61 5.19 30.23 0.16 -1.46 16 26 H 0.04 0.97 5.97 -2.39 -0.01 0.96 16 27 H 0.05 1.01 6.73 -2.39 -0.02 1.00 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.06 0.76 6.58 -2.38 -0.02 0.75 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.91 7.36 -2.39 -0.02 0.89 16 33 H 0.06 0.88 7.48 -2.39 -0.02 0.87 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.17 5.88 -2.39 -0.01 1.15 16 36 H 0.06 1.48 6.22 -2.39 -0.01 1.47 16 37 H 0.11 1.51 8.06 -2.39 -0.02 1.49 16 38 H 0.41 14.68 5.05 -92.71 -0.47 14.22 16 39 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 41 H 0.40 19.93 7.90 -92.70 -0.73 19.19 16 42 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.79 6.92 -2.38 -0.02 1.77 16 45 H 0.10 0.91 7.32 -2.39 -0.02 0.89 16 46 H 0.09 1.10 7.73 -2.39 -0.02 1.08 16 Total: -1.00 -70.90 355.07 2.14 -68.76 By element: Atomic # 1 Polarization: 45.70 SS G_CDS: -0.19 Total: 45.52 kcal Atomic # 6 Polarization: 31.86 SS G_CDS: 6.81 Total: 38.67 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.38 Total: -126.39 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -1.13 Total: -70.72 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -70.90 2.14 -68.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377052547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.653 kcal (2) G-P(sol) polarization free energy of solvation -70.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds