Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99481 * 2 1 4 4 C 1.53003 * 109.46578 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47039 * 65.00193 * 4 3 2 6 6 C 1.37103 * 120.00194 * 264.84797 * 5 4 3 7 7 H 1.08000 * 120.00149 * 137.21547 * 6 5 4 8 8 C 1.38949 * 119.99887 * 317.21977 * 6 5 4 9 9 N 1.31411 * 119.99648 * 349.35639 * 8 6 5 10 10 Si 1.86799 * 120.00197 * 169.35996 * 8 6 5 11 11 H 1.48494 * 109.46891 * 59.99572 * 10 8 6 12 12 H 1.48499 * 109.47237 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46978 * 299.99869 * 10 8 6 14 14 C 1.34777 * 120.00112 * 84.84678 * 5 4 3 15 15 O 1.21289 * 119.99994 * 6.19023 * 14 5 4 16 16 C 1.50708 * 119.99925 * 186.18217 * 14 5 4 17 17 H 1.09000 * 109.46800 * 33.48850 * 16 14 5 18 18 C 1.52997 * 109.47409 * 273.48140 * 16 14 5 19 19 C 1.53001 * 109.47045 * 180.02562 * 18 16 14 20 20 C 1.52993 * 109.46913 * 60.00378 * 19 18 16 21 21 C 1.53007 * 109.47325 * 299.99789 * 20 19 18 22 22 H 1.08999 * 109.46779 * 300.00010 * 21 20 19 23 23 C 1.50700 * 109.47085 * 180.02562 * 21 20 19 24 24 O 1.20818 * 119.99905 * 239.99810 * 23 21 20 25 25 O 1.34228 * 120.00138 * 60.00320 * 23 21 20 26 26 C 1.45195 * 117.00201 * 179.97438 * 25 23 21 27 27 C 1.53001 * 109.46952 * 60.00235 * 21 20 19 28 28 H 1.09003 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47010 * 299.99989 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.00191 * 1 2 3 31 31 H 1.08998 * 109.47408 * 60.00211 * 3 2 1 32 32 H 1.08997 * 109.47321 * 300.00005 * 3 2 1 33 33 H 1.08992 * 109.47538 * 305.00141 * 4 3 2 34 34 H 1.08999 * 109.46825 * 184.99797 * 4 3 2 35 35 H 0.97007 * 119.99673 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46706 * 60.00223 * 18 16 14 37 37 H 1.08999 * 109.47056 * 300.00503 * 18 16 14 38 38 H 1.08999 * 109.46770 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.47081 * 300.00093 * 19 18 16 40 40 H 1.08995 * 109.47479 * 59.99958 * 20 19 18 41 41 H 1.09003 * 109.47054 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47257 * 60.00184 * 26 25 23 43 43 H 1.09007 * 109.47097 * 179.97438 * 26 25 23 44 44 H 1.08996 * 109.47432 * 299.99786 * 26 25 23 45 45 H 1.08999 * 109.46780 * 180.02562 * 27 21 20 46 46 H 1.09000 * 109.46940 * 59.99823 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1996 -0.7876 -1.3044 7 1 3.8560 -1.3584 -2.1544 8 6 4.8677 -1.4232 -0.2650 9 7 5.4673 -0.7117 0.6629 10 14 4.9136 -3.2890 -0.1868 11 1 5.5662 -3.8198 -1.4105 12 1 5.6837 -3.7155 1.0091 13 1 3.5277 -3.8149 -0.0971 14 6 4.1633 1.3218 -2.3497 15 8 4.0756 2.5293 -2.2758 16 6 4.4811 0.6688 -3.6703 17 1 3.9711 -0.2925 -3.7322 18 6 5.9917 0.4532 -3.7822 19 6 6.3143 -0.2092 -5.1231 20 6 5.8422 0.6936 -6.2645 21 6 4.3315 0.9094 -6.1526 22 1 3.8216 -0.0519 -6.2151 23 6 3.8664 1.7982 -7.2773 24 8 3.3318 2.8534 -7.0317 25 8 4.0461 1.4174 -8.5518 26 6 3.5728 2.3231 -9.5833 27 6 4.0089 1.5718 -4.8117 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8507 0.5686 0.8426 34 1 3.9783 2.1766 0.0902 35 1 5.9340 -1.1554 1.3884 36 1 6.3281 -0.1897 -2.9687 37 1 6.5015 1.4146 -3.7201 38 1 7.3904 -0.3632 -5.2026 39 1 5.8044 -1.1705 -5.1855 40 1 6.3521 1.6549 -6.2021 41 1 6.0716 0.2216 -7.2198 42 1 4.0848 3.2807 -9.4889 43 1 3.7798 1.8961 -10.5647 44 1 2.4990 2.4725 -9.4709 45 1 2.9327 1.7251 -4.7319 46 1 4.5189 2.5331 -4.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -180.152979 kcal Electronic energy + Delta-G solvation = -27835.232989 eV Core-core repulsion = 23917.815287 eV Total energy + Delta-G solvation = -3917.417702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63848 -39.11778 -37.47624 -36.70705 -36.20984 -34.60699 -31.50715 -31.34075 -30.56676 -28.92670 -27.71671 -25.80110 -24.69420 -23.69896 -23.25072 -21.48731 -20.72233 -19.50554 -18.94527 -17.64160 -16.94818 -16.36675 -16.25315 -15.93918 -15.41283 -15.24390 -14.71544 -14.37855 -14.29670 -14.11011 -13.88354 -13.82616 -13.31178 -13.01788 -12.91432 -12.52019 -12.29988 -12.00805 -11.92507 -11.83764 -11.46158 -11.11515 -11.07883 -10.96515 -10.95775 -10.86790 -10.80082 -10.61673 -10.43004 -10.40938 -10.20934 -10.08359 -9.81284 -9.73901 -9.04424 -8.92767 -8.29039 -7.36337 -6.23326 -4.00734 2.28680 2.73296 3.20237 3.27349 3.30410 3.93728 4.20796 4.53106 4.68183 4.72478 4.91056 5.00050 5.06057 5.07293 5.15221 5.31399 5.47369 5.51454 5.61931 5.67719 5.69967 5.74282 5.81069 5.89944 5.94576 6.00740 6.07120 6.10691 6.19742 6.31008 6.36482 6.38285 6.40245 6.56002 6.59757 6.65487 6.83910 6.95990 6.97760 7.36597 7.55867 7.82107 7.88042 8.11918 8.45184 9.18997 9.59193 10.01450 10.79641 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.004344 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.823189 B = 6444.230386 C = 7420.809083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.051 3.949 4 C 0.115 3.885 5 N -0.431 5.431 6 C -0.317 4.317 7 H 0.084 0.916 8 C 0.047 3.953 9 N -0.873 5.873 10 Si 0.915 3.085 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.481 3.519 15 O -0.606 6.606 16 C -0.084 4.084 17 H 0.088 0.912 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.077 4.077 22 H 0.108 0.892 23 C 0.464 3.536 24 O -0.503 6.503 25 O -0.361 6.361 26 C 0.034 3.966 27 C -0.084 4.084 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.268 0.732 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -0.730 -11.910 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.149 5.149 6 C -0.445 4.445 7 H 0.101 0.899 8 C -0.157 4.157 9 N -0.511 5.511 10 Si 0.742 3.258 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.198 1.198 14 C 0.270 3.730 15 O -0.492 6.492 16 C -0.105 4.105 17 H 0.106 0.894 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.146 4.146 21 C -0.096 4.096 22 H 0.126 0.874 23 C 0.307 3.693 24 O -0.389 6.389 25 O -0.278 6.278 26 C -0.060 4.060 27 C -0.122 4.122 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.249 -0.014 -11.607 11.823 hybrid contribution -0.496 -0.577 0.062 0.763 sum -2.745 -0.590 -11.544 11.881 Atomic orbital electron populations 1.22642 0.83543 1.01671 0.98800 1.88139 1.17264 1.27792 1.95025 1.23082 0.96870 0.84211 0.98465 1.21443 0.88664 0.99114 0.91659 1.43247 1.56896 1.07240 1.07510 1.19186 1.35269 0.82268 1.07758 0.89867 1.25326 0.94411 0.99535 0.96453 1.69795 1.32014 1.35791 1.13460 0.86204 0.78421 0.83503 0.77713 1.19902 1.21161 1.19846 1.20358 0.79578 0.86544 0.86520 1.90521 1.57228 1.14752 1.86684 1.20953 0.97596 0.99388 0.92548 0.89352 1.21387 0.94274 1.01263 0.97305 1.21531 1.00847 0.98582 0.94162 1.21542 0.92173 1.01133 0.99735 1.21193 0.98734 0.98725 0.90975 0.87403 1.24075 0.75582 0.86219 0.83474 1.90672 1.39618 1.24101 1.84541 1.86523 1.75280 1.49615 1.16395 1.23217 1.00007 0.93681 0.89069 1.21276 1.01986 0.99237 0.89670 0.90461 0.95204 0.95057 0.94383 0.94372 0.86699 0.91383 0.92217 0.89638 0.92279 0.91547 0.91461 0.91526 0.91056 0.92055 0.88352 0.92080 0.91557 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.81 10.42 -35.23 -0.37 -8.18 16 3 C 0.05 1.09 6.25 37.16 0.23 1.32 16 4 C 0.12 2.77 5.31 -4.04 -0.02 2.75 16 5 N -0.43 -10.70 2.46 -114.81 -0.28 -10.98 16 6 C -0.32 -7.82 7.80 -14.93 -0.12 -7.93 16 7 H 0.08 1.98 6.54 -52.49 -0.34 1.64 16 8 C 0.05 1.18 5.13 -17.47 -0.09 1.09 16 9 N -0.87 -22.87 11.27 55.50 0.63 -22.24 16 10 Si 0.91 19.57 29.57 -169.99 -5.03 14.54 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.48 11.55 6.68 -10.98 -0.07 11.48 16 15 O -0.61 -16.03 15.75 5.55 0.09 -15.94 16 16 C -0.08 -1.62 1.84 -91.77 -0.17 -1.79 16 17 H 0.09 1.67 6.54 -51.93 -0.34 1.33 16 18 C -0.10 -1.84 5.14 -26.73 -0.14 -1.97 16 19 C -0.11 -1.53 5.92 -26.73 -0.16 -1.68 16 20 C -0.11 -1.36 5.14 -26.73 -0.14 -1.50 16 21 C -0.08 -1.09 2.63 -91.77 -0.24 -1.33 16 22 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 23 C 0.46 6.88 7.26 36.01 0.26 7.14 16 24 O -0.50 -9.00 15.73 -18.74 -0.29 -9.29 16 25 O -0.36 -4.52 10.47 -39.25 -0.41 -4.93 16 26 C 0.03 0.32 10.56 101.05 1.07 1.39 16 27 C -0.08 -1.50 3.33 -26.73 -0.09 -1.58 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.12 2.97 5.59 -51.93 -0.29 2.68 16 34 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.09 1.69 7.62 -51.93 -0.40 1.29 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 42 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 45 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 46 H 0.08 1.57 7.82 -51.93 -0.41 1.16 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -30.99 372.91 -6.25 -37.24 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.64 Total: 5.18 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 1.44 Total: 8.98 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.34 Total: -33.22 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.99 Total: -38.34 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.99 -6.25 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.914 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds