Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99481 * 2 1 4 4 C 1.53003 * 109.46578 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47039 * 65.00193 * 4 3 2 6 6 C 1.37103 * 120.00194 * 264.84797 * 5 4 3 7 7 H 1.08000 * 120.00149 * 137.21547 * 6 5 4 8 8 C 1.38949 * 119.99887 * 317.21977 * 6 5 4 9 9 N 1.31411 * 119.99648 * 349.35639 * 8 6 5 10 10 Si 1.86799 * 120.00197 * 169.35996 * 8 6 5 11 11 H 1.48494 * 109.46891 * 59.99572 * 10 8 6 12 12 H 1.48499 * 109.47237 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46978 * 299.99869 * 10 8 6 14 14 C 1.34777 * 120.00112 * 84.84678 * 5 4 3 15 15 O 1.21289 * 119.99994 * 6.19023 * 14 5 4 16 16 C 1.50708 * 119.99925 * 186.18217 * 14 5 4 17 17 H 1.09000 * 109.46800 * 33.48850 * 16 14 5 18 18 C 1.52997 * 109.47409 * 273.48140 * 16 14 5 19 19 C 1.53001 * 109.47045 * 180.02562 * 18 16 14 20 20 C 1.52993 * 109.46913 * 60.00378 * 19 18 16 21 21 C 1.53007 * 109.47325 * 299.99789 * 20 19 18 22 22 H 1.08999 * 109.46779 * 300.00010 * 21 20 19 23 23 C 1.50700 * 109.47085 * 180.02562 * 21 20 19 24 24 O 1.20818 * 119.99905 * 239.99810 * 23 21 20 25 25 O 1.34228 * 120.00138 * 60.00320 * 23 21 20 26 26 C 1.45195 * 117.00201 * 179.97438 * 25 23 21 27 27 C 1.53001 * 109.46952 * 60.00235 * 21 20 19 28 28 H 1.09003 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47010 * 299.99989 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.00191 * 1 2 3 31 31 H 1.08998 * 109.47408 * 60.00211 * 3 2 1 32 32 H 1.08997 * 109.47321 * 300.00005 * 3 2 1 33 33 H 1.08992 * 109.47538 * 305.00141 * 4 3 2 34 34 H 1.08999 * 109.46825 * 184.99797 * 4 3 2 35 35 H 0.97007 * 119.99673 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.46706 * 60.00223 * 18 16 14 37 37 H 1.08999 * 109.47056 * 300.00503 * 18 16 14 38 38 H 1.08999 * 109.46770 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.47081 * 300.00093 * 19 18 16 40 40 H 1.08995 * 109.47479 * 59.99958 * 20 19 18 41 41 H 1.09003 * 109.47054 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47257 * 60.00184 * 26 25 23 43 43 H 1.09007 * 109.47097 * 179.97438 * 26 25 23 44 44 H 1.08996 * 109.47432 * 299.99786 * 26 25 23 45 45 H 1.08999 * 109.46780 * 180.02562 * 27 21 20 46 46 H 1.09000 * 109.46940 * 59.99823 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1996 -0.7876 -1.3044 7 1 3.8560 -1.3584 -2.1544 8 6 4.8677 -1.4232 -0.2650 9 7 5.4673 -0.7117 0.6629 10 14 4.9136 -3.2890 -0.1868 11 1 5.5662 -3.8198 -1.4105 12 1 5.6837 -3.7155 1.0091 13 1 3.5277 -3.8149 -0.0971 14 6 4.1633 1.3218 -2.3497 15 8 4.0756 2.5293 -2.2758 16 6 4.4811 0.6688 -3.6703 17 1 3.9711 -0.2925 -3.7322 18 6 5.9917 0.4532 -3.7822 19 6 6.3143 -0.2092 -5.1231 20 6 5.8422 0.6936 -6.2645 21 6 4.3315 0.9094 -6.1526 22 1 3.8216 -0.0519 -6.2151 23 6 3.8664 1.7982 -7.2773 24 8 3.3318 2.8534 -7.0317 25 8 4.0461 1.4174 -8.5518 26 6 3.5728 2.3231 -9.5833 27 6 4.0089 1.5718 -4.8117 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8507 0.5686 0.8426 34 1 3.9783 2.1766 0.0902 35 1 5.9340 -1.1554 1.3884 36 1 6.3281 -0.1897 -2.9687 37 1 6.5015 1.4146 -3.7201 38 1 7.3904 -0.3632 -5.2026 39 1 5.8044 -1.1705 -5.1855 40 1 6.3521 1.6549 -6.2021 41 1 6.0716 0.2216 -7.2198 42 1 4.0848 3.2807 -9.4889 43 1 3.7798 1.8961 -10.5647 44 1 2.4990 2.4725 -9.4709 45 1 2.9327 1.7251 -4.7319 46 1 4.5189 2.5331 -4.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -198.672039 kcal Electronic energy + Delta-G solvation = -27836.036035 eV Core-core repulsion = 23917.815287 eV Total energy + Delta-G solvation = -3918.220749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82608 -40.80206 -38.95040 -38.20218 -37.40895 -36.52942 -33.43443 -32.73499 -31.89079 -30.59213 -28.59058 -27.27430 -26.56410 -24.98167 -24.73163 -23.03022 -21.95755 -20.95607 -20.63045 -19.05423 -18.24863 -17.97787 -17.48314 -17.28918 -17.13216 -16.88745 -16.12150 -16.08265 -15.83719 -15.74559 -15.16254 -15.01544 -14.69340 -14.58371 -14.13629 -13.87174 -13.56847 -13.49432 -13.36117 -13.20878 -12.98656 -12.77426 -12.70120 -12.56538 -12.50341 -12.30360 -12.10451 -11.99817 -11.82849 -11.78288 -11.68510 -11.53943 -11.30508 -11.05342 -10.88214 -10.55062 -10.16697 -9.31945 -8.14328 -5.97587 1.14511 1.50642 1.56082 1.62426 1.71266 2.08194 2.42263 2.93305 3.04949 3.23882 3.57573 3.75891 3.83435 4.11250 4.22812 4.26956 4.27746 4.32244 4.34050 4.38344 4.45455 4.50719 4.52484 4.53427 4.56564 4.63137 4.67311 4.70684 4.74673 4.80513 4.93062 5.07759 5.10996 5.21276 5.24908 5.33801 5.35903 5.40025 5.50543 5.55995 5.62103 6.14481 6.40047 6.50953 6.71878 7.25605 7.67449 8.10239 8.89230 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.004344 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.823189 B = 6444.230386 C = 7420.809083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.065 3.935 4 C 0.112 3.888 5 N -0.441 5.441 6 C -0.323 4.323 7 H 0.093 0.907 8 C 0.006 3.994 9 N -0.906 5.906 10 Si 0.978 3.022 11 H -0.256 1.256 12 H -0.290 1.290 13 H -0.273 1.273 14 C 0.464 3.536 15 O -0.641 6.641 16 C -0.075 4.075 17 H 0.097 0.903 18 C -0.099 4.099 19 C -0.104 4.104 20 C -0.101 4.101 21 C -0.072 4.072 22 H 0.135 0.865 23 C 0.469 3.531 24 O -0.543 6.543 25 O -0.355 6.355 26 C 0.026 3.974 27 C -0.073 4.073 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.267 0.733 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.137 0.863 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -3.144 -14.157 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.013 4.013 4 C -0.012 4.012 5 N -0.158 5.158 6 C -0.450 4.450 7 H 0.111 0.889 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.802 3.198 11 H -0.180 1.180 12 H -0.216 1.216 13 H -0.199 1.199 14 C 0.255 3.745 15 O -0.530 6.530 16 C -0.096 4.096 17 H 0.115 0.885 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.091 4.091 22 H 0.152 0.848 23 C 0.314 3.686 24 O -0.432 6.432 25 O -0.271 6.271 26 C -0.067 4.067 27 C -0.111 4.111 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.429 -2.450 -13.883 14.305 hybrid contribution -0.498 0.248 0.774 0.954 sum -2.927 -2.201 -13.108 13.610 Atomic orbital electron populations 1.22893 0.80688 1.03418 1.00147 1.88065 1.20401 1.27564 1.95277 1.22817 0.94753 0.84641 0.99091 1.21357 0.90962 0.97602 0.91245 1.43492 1.56815 1.07661 1.07791 1.19458 1.35181 0.82202 1.08205 0.88922 1.26111 0.93843 1.03661 0.95904 1.69930 1.32910 1.37497 1.14096 0.85220 0.78213 0.78252 0.78088 1.17988 1.21591 1.19873 1.21255 0.78852 0.86372 0.88037 1.90483 1.58704 1.16338 1.87456 1.20932 0.99043 0.99338 0.90313 0.88472 1.21334 0.92473 1.00387 0.99533 1.21494 1.02521 0.98790 0.91295 1.21540 0.90420 1.00974 1.00931 1.21139 1.00412 0.99087 0.88478 0.84752 1.24094 0.74637 0.85435 0.84438 1.90668 1.41568 1.25807 1.85204 1.86499 1.74850 1.50001 1.15724 1.23559 0.99878 0.93668 0.89606 1.21074 1.00273 0.98049 0.91746 0.88564 0.93109 0.94383 0.91796 0.95513 0.88441 0.93239 0.92358 0.92037 0.93952 0.89382 0.89763 0.92300 0.87690 0.92327 0.84525 0.92293 0.93450 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.01 16 2 O -0.39 -16.78 10.42 -148.98 -1.55 -18.33 16 3 C 0.06 2.79 6.25 71.98 0.45 3.23 16 4 C 0.11 5.66 5.31 86.38 0.46 6.11 16 5 N -0.44 -22.56 2.46 -635.54 -1.56 -24.12 16 6 C -0.32 -16.03 7.80 84.04 0.66 -15.37 16 7 H 0.09 4.34 6.54 -2.91 -0.02 4.32 16 8 C 0.01 0.30 5.13 84.93 0.44 0.74 16 9 N -0.91 -48.50 11.27 21.66 0.24 -48.26 16 10 Si 0.98 39.47 29.57 68.60 2.03 41.50 16 11 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 12 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 14 C 0.46 23.22 6.68 87.66 0.59 23.81 16 15 O -0.64 -35.84 15.75 -3.06 -0.05 -35.89 16 16 C -0.08 -2.95 1.84 -11.54 -0.02 -2.97 16 17 H 0.10 3.61 6.54 -2.39 -0.02 3.59 16 18 C -0.10 -3.48 5.14 30.59 0.16 -3.32 16 19 C -0.10 -2.48 5.92 30.59 0.18 -2.30 16 20 C -0.10 -2.24 5.14 30.59 0.16 -2.09 16 21 C -0.07 -1.91 2.63 -11.54 -0.03 -1.94 16 22 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 23 C 0.47 13.25 7.26 71.24 0.52 13.76 16 24 O -0.54 -19.49 15.73 21.99 0.35 -19.14 16 25 O -0.35 -7.88 10.47 -51.39 -0.54 -8.41 16 26 C 0.03 0.42 10.56 113.37 1.20 1.62 16 27 C -0.07 -2.66 3.33 30.60 0.10 -2.56 16 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 5.25 5.59 -2.39 -0.01 5.24 16 34 H 0.05 2.59 7.50 -2.39 -0.02 2.58 16 35 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 36 H 0.06 2.45 7.62 -2.39 -0.02 2.43 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.73 8.11 -2.39 -0.02 1.71 16 42 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.06 1.00 8.13 -2.39 -0.02 0.99 16 45 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 46 H 0.05 2.11 7.82 -2.39 -0.02 2.09 16 Total: -1.00 -70.42 372.91 5.96 -64.46 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.96 Total: 27.46 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 6.09 Total: 20.74 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.32 Total: -72.38 kcal Atomic # 8 Polarization: -79.99 SS G_CDS: -1.79 Total: -81.78 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -70.42 5.96 -64.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.211 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds