Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00146 * 2 1 4 4 C 1.52996 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47133 * 65.00774 * 4 3 2 6 6 C 1.37096 * 119.99352 * 268.03044 * 5 4 3 7 7 H 1.08000 * 120.00411 * 51.52969 * 6 5 4 8 8 C 1.38955 * 119.99736 * 231.53059 * 6 5 4 9 9 N 1.31412 * 120.00065 * 19.13000 * 8 6 5 10 10 Si 1.86807 * 119.99856 * 199.13051 * 8 6 5 11 11 H 1.48496 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46891 * 120.00094 * 10 8 6 13 13 H 1.48502 * 109.46835 * 239.99805 * 10 8 6 14 14 C 1.34772 * 120.00373 * 88.02712 * 5 4 3 15 15 O 1.21289 * 120.00107 * 5.36077 * 14 5 4 16 16 C 1.50697 * 119.99775 * 185.36004 * 14 5 4 17 17 H 1.08993 * 109.47356 * 309.01925 * 16 14 5 18 18 C 1.53003 * 109.47142 * 69.02198 * 16 14 5 19 19 C 1.52997 * 109.46972 * 179.97438 * 18 16 14 20 20 C 1.53000 * 109.47590 * 300.00027 * 19 18 16 21 21 C 1.53000 * 109.47118 * 59.99627 * 20 19 18 22 22 H 1.09002 * 109.46833 * 60.00567 * 21 20 19 23 23 C 1.50698 * 109.47072 * 180.02562 * 21 20 19 24 24 O 1.20833 * 119.99809 * 120.00186 * 23 21 20 25 25 O 1.34227 * 120.00357 * 300.00204 * 23 21 20 26 26 C 1.45194 * 117.00167 * 179.97438 * 25 23 21 27 27 C 1.52997 * 109.47194 * 300.00616 * 21 20 19 28 28 H 1.08999 * 109.47121 * 59.99668 * 1 2 3 29 29 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46796 * 299.99426 * 1 2 3 31 31 H 1.09007 * 109.46557 * 60.00234 * 3 2 1 32 32 H 1.08999 * 109.47231 * 300.00818 * 3 2 1 33 33 H 1.08992 * 109.47394 * 304.99933 * 4 3 2 34 34 H 1.09000 * 109.46695 * 185.00017 * 4 3 2 35 35 H 0.97003 * 119.99865 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.46702 * 299.99797 * 18 16 14 37 37 H 1.09002 * 109.47189 * 59.99567 * 18 16 14 38 38 H 1.09005 * 109.47282 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47191 * 59.99968 * 19 18 16 40 40 H 1.09002 * 109.46805 * 300.00177 * 20 19 18 41 41 H 1.08999 * 109.47279 * 180.02562 * 20 19 18 42 42 H 1.08996 * 109.47483 * 300.00526 * 26 25 23 43 43 H 1.09005 * 109.47272 * 60.00546 * 26 25 23 44 44 H 1.08999 * 109.47384 * 179.97438 * 26 25 23 45 45 H 1.09005 * 109.47282 * 180.02562 * 27 21 20 46 46 H 1.09002 * 109.47191 * 299.99732 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.1367 -0.7956 -1.3226 7 1 3.3390 -1.4508 -1.0052 8 6 5.3254 -1.3309 -1.8037 9 7 6.4128 -0.5936 -1.8351 10 14 5.3778 -3.0985 -2.4056 11 1 4.0315 -3.7092 -2.2654 12 1 5.7870 -3.1234 -3.8329 13 1 6.3567 -3.8681 -1.5965 14 6 4.2252 1.3298 -2.3319 15 8 4.1781 2.5384 -2.2426 16 6 4.5615 0.6841 -3.6513 17 1 5.3636 -0.0398 -3.5077 18 6 3.3239 -0.0282 -4.2007 19 6 3.6652 -0.6831 -5.5406 20 6 4.1181 0.3903 -6.5324 21 6 5.3557 1.1027 -5.9830 22 1 6.1579 0.3788 -5.8397 23 6 5.8014 2.1604 -6.9596 24 8 5.8420 3.3189 -6.6186 25 8 6.1532 1.8156 -8.2082 26 6 6.5715 2.8867 -9.0947 27 6 5.0143 1.7576 -4.6431 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1765 0.0902 35 1 7.2425 -0.9671 -2.1713 36 1 3.0011 -0.7926 -3.4940 37 1 2.5218 0.6958 -4.3444 38 1 2.7836 -1.1910 -5.9319 39 1 4.4674 -1.4070 -5.3974 40 1 3.3159 1.1142 -6.6757 41 1 4.3608 -0.0763 -7.4871 42 1 5.7584 3.6038 -9.2070 43 1 7.4426 3.3882 -8.6730 44 1 6.8281 2.4721 -10.0696 45 1 5.8959 2.2655 -4.2519 46 1 4.2121 2.4815 -4.7864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -176.511287 kcal Electronic energy + Delta-G solvation = -28345.885620 eV Core-core repulsion = 24428.625833 eV Total energy + Delta-G solvation = -3917.259787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49391 -39.08212 -37.46021 -36.70398 -36.07288 -34.51927 -32.20742 -30.94901 -30.17230 -28.88138 -27.60555 -25.91813 -24.65720 -23.49841 -23.22396 -21.41388 -20.63461 -19.59933 -18.86593 -17.52026 -16.87173 -16.25533 -16.01877 -15.95566 -15.64779 -14.92249 -14.77468 -14.56152 -14.37316 -13.99304 -13.78141 -13.62862 -13.39335 -12.90487 -12.74044 -12.40539 -12.16226 -12.08689 -11.95576 -11.63199 -11.32061 -11.24175 -11.18297 -11.11521 -10.92454 -10.72951 -10.67971 -10.59644 -10.48186 -10.33856 -10.24462 -10.05423 -9.76956 -9.53983 -9.14516 -8.64993 -8.09612 -7.23896 -6.36355 -4.11959 2.43236 2.87159 3.11379 3.23073 3.27291 4.07961 4.18757 4.39609 4.81560 4.86662 4.97167 5.07675 5.09975 5.17232 5.21008 5.41911 5.56451 5.60647 5.64741 5.66803 5.80941 5.84633 5.89064 5.93617 5.96628 6.02247 6.07206 6.14937 6.20899 6.33422 6.47145 6.50774 6.52819 6.64997 6.73860 6.79415 6.90090 6.97151 7.19752 7.36827 7.55592 7.72084 7.96599 8.04656 8.76828 8.98878 9.68483 10.10258 10.68787 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.004895 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.704864 B = 5719.103858 C = 6495.486426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.449 5.449 6 C -0.319 4.319 7 H 0.090 0.910 8 C 0.046 3.954 9 N -0.860 5.860 10 Si 0.897 3.103 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.282 1.282 14 C 0.522 3.478 15 O -0.612 6.612 16 C -0.099 4.099 17 H 0.125 0.875 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.078 4.078 22 H 0.107 0.893 23 C 0.464 3.536 24 O -0.503 6.503 25 O -0.362 6.362 26 C 0.034 3.966 27 C -0.078 4.078 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.269 0.731 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -0.996 -8.295 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.025 4.025 4 C -0.010 4.010 5 N -0.168 5.168 6 C -0.447 4.447 7 H 0.107 0.893 8 C -0.159 4.159 9 N -0.496 5.496 10 Si 0.722 3.278 11 H -0.187 1.187 12 H -0.200 1.200 13 H -0.208 1.208 14 C 0.313 3.687 15 O -0.498 6.498 16 C -0.120 4.120 17 H 0.142 0.858 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.097 4.097 22 H 0.125 0.875 23 C 0.307 3.693 24 O -0.389 6.389 25 O -0.279 6.279 26 C -0.060 4.060 27 C -0.116 4.116 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.315 -0.216 -8.177 9.248 hybrid contribution 0.168 -0.425 -0.321 0.559 sum -4.147 -0.641 -8.498 9.477 Atomic orbital electron populations 1.22645 0.83002 1.01864 0.99010 1.88057 1.17835 1.27935 1.95123 1.23050 0.96122 0.84332 0.98986 1.21376 0.90339 0.99130 0.90169 1.43188 1.60566 1.06707 1.06368 1.19385 0.99311 0.80915 1.45126 0.89289 1.25554 0.94577 0.98669 0.97143 1.70045 0.99497 1.37686 1.42419 0.86345 0.78950 0.83478 0.78981 1.18736 1.19984 1.20810 1.20160 0.77117 0.85865 0.85563 1.90495 1.57905 1.15238 1.86139 1.21335 1.00494 0.98286 0.91840 0.85818 1.21468 0.96925 1.00193 0.95960 1.21554 1.01071 0.97243 0.95481 1.21522 0.95727 0.98330 0.98837 1.21214 1.00065 0.95199 0.93208 0.87509 1.24135 0.73416 0.90332 0.81406 1.90665 1.49263 1.21244 1.77725 1.86530 1.77200 1.40440 1.23732 1.23199 1.00238 0.89971 0.92576 1.21208 1.02458 0.97446 0.90471 0.94784 0.90308 0.95090 0.94167 0.93677 0.90820 0.90601 0.92085 0.89344 0.93222 0.91769 0.91698 0.91684 0.91241 0.92135 0.92104 0.88451 0.91268 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -7.10 9.90 -35.23 -0.35 -7.45 16 3 C 0.05 1.01 6.27 37.16 0.23 1.24 16 4 C 0.11 2.51 5.82 -4.04 -0.02 2.48 16 5 N -0.45 -11.05 2.40 -114.82 -0.28 -11.32 16 6 C -0.32 -7.84 6.85 -14.93 -0.10 -7.95 16 7 H 0.09 2.22 7.46 -52.49 -0.39 1.83 16 8 C 0.05 1.10 3.41 -17.47 -0.06 1.04 16 9 N -0.86 -22.21 11.53 55.50 0.64 -21.57 16 10 Si 0.90 18.70 29.59 -169.99 -5.03 13.67 16 11 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 C 0.52 13.24 6.29 -10.99 -0.07 13.17 16 15 O -0.61 -16.90 15.56 5.55 0.09 -16.81 16 16 C -0.10 -2.18 1.63 -91.77 -0.15 -2.33 16 17 H 0.12 2.92 4.42 -51.93 -0.23 2.69 16 18 C -0.11 -2.05 5.06 -26.73 -0.14 -2.18 16 19 C -0.12 -1.80 5.92 -26.73 -0.16 -1.96 16 20 C -0.11 -1.56 5.14 -26.73 -0.14 -1.69 16 21 C -0.08 -1.32 2.63 -91.77 -0.24 -1.56 16 22 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 23 C 0.46 7.87 7.26 36.00 0.26 8.13 16 24 O -0.50 -9.97 15.73 -18.76 -0.29 -10.27 16 25 O -0.36 -5.17 10.47 -39.25 -0.41 -5.58 16 26 C 0.03 0.37 10.56 101.05 1.07 1.44 16 27 C -0.08 -1.62 3.11 -26.73 -0.08 -1.70 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.59 8.02 -51.93 -0.42 1.18 16 34 H 0.08 1.70 7.41 -51.93 -0.38 1.32 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.09 1.79 6.51 -51.93 -0.34 1.45 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 46 H 0.07 1.48 7.96 -51.93 -0.41 1.06 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -30.76 369.60 -6.20 -36.95 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.65 Total: 7.10 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 1.51 Total: 9.71 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.36 Total: -32.89 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.97 Total: -40.11 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.76 -6.20 -36.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.557 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds