Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00146 * 2 1 4 4 C 1.52996 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47133 * 65.00774 * 4 3 2 6 6 C 1.37096 * 119.99352 * 268.03044 * 5 4 3 7 7 H 1.08000 * 120.00411 * 51.52969 * 6 5 4 8 8 C 1.38955 * 119.99736 * 231.53059 * 6 5 4 9 9 N 1.31412 * 120.00065 * 19.13000 * 8 6 5 10 10 Si 1.86807 * 119.99856 * 199.13051 * 8 6 5 11 11 H 1.48496 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46891 * 120.00094 * 10 8 6 13 13 H 1.48502 * 109.46835 * 239.99805 * 10 8 6 14 14 C 1.34772 * 120.00373 * 88.02712 * 5 4 3 15 15 O 1.21289 * 120.00107 * 5.36077 * 14 5 4 16 16 C 1.50697 * 119.99775 * 185.36004 * 14 5 4 17 17 H 1.08993 * 109.47356 * 309.01925 * 16 14 5 18 18 C 1.53003 * 109.47142 * 69.02198 * 16 14 5 19 19 C 1.52997 * 109.46972 * 179.97438 * 18 16 14 20 20 C 1.53000 * 109.47590 * 300.00027 * 19 18 16 21 21 C 1.53000 * 109.47118 * 59.99627 * 20 19 18 22 22 H 1.09002 * 109.46833 * 60.00567 * 21 20 19 23 23 C 1.50698 * 109.47072 * 180.02562 * 21 20 19 24 24 O 1.20833 * 119.99809 * 120.00186 * 23 21 20 25 25 O 1.34227 * 120.00357 * 300.00204 * 23 21 20 26 26 C 1.45194 * 117.00167 * 179.97438 * 25 23 21 27 27 C 1.52997 * 109.47194 * 300.00616 * 21 20 19 28 28 H 1.08999 * 109.47121 * 59.99668 * 1 2 3 29 29 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46796 * 299.99426 * 1 2 3 31 31 H 1.09007 * 109.46557 * 60.00234 * 3 2 1 32 32 H 1.08999 * 109.47231 * 300.00818 * 3 2 1 33 33 H 1.08992 * 109.47394 * 304.99933 * 4 3 2 34 34 H 1.09000 * 109.46695 * 185.00017 * 4 3 2 35 35 H 0.97003 * 119.99865 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.46702 * 299.99797 * 18 16 14 37 37 H 1.09002 * 109.47189 * 59.99567 * 18 16 14 38 38 H 1.09005 * 109.47282 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47191 * 59.99968 * 19 18 16 40 40 H 1.09002 * 109.46805 * 300.00177 * 20 19 18 41 41 H 1.08999 * 109.47279 * 180.02562 * 20 19 18 42 42 H 1.08996 * 109.47483 * 300.00526 * 26 25 23 43 43 H 1.09005 * 109.47272 * 60.00546 * 26 25 23 44 44 H 1.08999 * 109.47384 * 179.97438 * 26 25 23 45 45 H 1.09005 * 109.47282 * 180.02562 * 27 21 20 46 46 H 1.09002 * 109.47191 * 299.99732 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5641 -1.2510 6 6 4.1367 -0.7956 -1.3226 7 1 3.3390 -1.4508 -1.0052 8 6 5.3254 -1.3309 -1.8037 9 7 6.4128 -0.5936 -1.8351 10 14 5.3778 -3.0985 -2.4056 11 1 4.0315 -3.7092 -2.2654 12 1 5.7870 -3.1234 -3.8329 13 1 6.3567 -3.8681 -1.5965 14 6 4.2252 1.3298 -2.3319 15 8 4.1781 2.5384 -2.2426 16 6 4.5615 0.6841 -3.6513 17 1 5.3636 -0.0398 -3.5077 18 6 3.3239 -0.0282 -4.2007 19 6 3.6652 -0.6831 -5.5406 20 6 4.1181 0.3903 -6.5324 21 6 5.3557 1.1027 -5.9830 22 1 6.1579 0.3788 -5.8397 23 6 5.8014 2.1604 -6.9596 24 8 5.8420 3.3189 -6.6186 25 8 6.1532 1.8156 -8.2082 26 6 6.5715 2.8867 -9.0947 27 6 5.0143 1.7576 -4.6431 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1765 0.0902 35 1 7.2425 -0.9671 -2.1713 36 1 3.0011 -0.7926 -3.4940 37 1 2.5218 0.6958 -4.3444 38 1 2.7836 -1.1910 -5.9319 39 1 4.4674 -1.4070 -5.3974 40 1 3.3159 1.1142 -6.6757 41 1 4.3608 -0.0763 -7.4871 42 1 5.7584 3.6038 -9.2070 43 1 7.4426 3.3882 -8.6730 44 1 6.8281 2.4721 -10.0696 45 1 5.8959 2.2655 -4.2519 46 1 4.2121 2.4815 -4.7864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -194.961182 kcal Electronic energy + Delta-G solvation = -28346.685667 eV Core-core repulsion = 24428.625833 eV Total energy + Delta-G solvation = -3918.059834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85006 -40.82847 -38.90561 -38.19144 -37.42451 -36.45981 -34.00562 -32.46011 -31.70909 -30.50775 -28.60414 -27.26458 -26.50384 -24.89871 -24.78746 -22.97248 -22.00810 -21.23862 -20.51072 -19.05907 -18.33434 -17.60850 -17.55994 -17.38095 -17.19958 -16.64946 -16.30239 -16.09746 -15.99265 -15.49405 -15.25251 -15.00878 -14.75275 -14.39388 -14.18536 -13.89177 -13.68821 -13.44255 -13.25773 -13.03364 -12.98582 -12.86360 -12.82383 -12.71627 -12.56374 -12.25096 -12.10147 -12.02252 -11.94261 -11.82879 -11.69949 -11.50395 -11.32028 -11.01609 -10.56743 -10.52283 -10.01367 -9.16912 -8.24892 -6.07889 1.10797 1.46838 1.53279 1.65414 1.69081 2.22770 2.39529 2.94753 3.06740 3.15093 3.57738 3.75532 3.83871 4.17458 4.21996 4.27353 4.29140 4.30922 4.33063 4.38154 4.45772 4.50256 4.55448 4.57342 4.60959 4.63642 4.68990 4.70816 4.78243 4.87156 4.97472 5.03068 5.09303 5.16144 5.24617 5.31413 5.35096 5.36418 5.59451 5.60177 5.67954 6.12932 6.36051 6.68867 6.82342 7.08232 7.73906 8.17693 8.81379 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.004895 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.704864 B = 5719.103858 C = 6495.486426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.067 3.933 4 C 0.105 3.895 5 N -0.453 5.453 6 C -0.329 4.329 7 H 0.086 0.914 8 C 0.016 3.984 9 N -0.894 5.894 10 Si 0.955 3.045 11 H -0.254 1.254 12 H -0.256 1.256 13 H -0.288 1.288 14 C 0.503 3.497 15 O -0.649 6.649 16 C -0.094 4.094 17 H 0.113 0.887 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.075 4.075 22 H 0.117 0.883 23 C 0.471 3.529 24 O -0.541 6.541 25 O -0.355 6.355 26 C 0.025 3.975 27 C -0.067 4.067 28 H 0.037 0.963 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.272 0.728 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.138 0.862 45 H 0.031 0.969 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -3.267 -10.398 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.010 4.010 4 C -0.019 4.019 5 N -0.172 5.172 6 C -0.457 4.457 7 H 0.104 0.896 8 C -0.186 4.186 9 N -0.532 5.532 10 Si 0.777 3.223 11 H -0.178 1.178 12 H -0.180 1.180 13 H -0.214 1.214 14 C 0.294 3.706 15 O -0.538 6.538 16 C -0.115 4.115 17 H 0.130 0.870 18 C -0.140 4.140 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.094 4.094 22 H 0.135 0.865 23 C 0.315 3.685 24 O -0.430 6.430 25 O -0.271 6.271 26 C -0.068 4.068 27 C -0.105 4.105 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.156 0.844 45 H 0.050 0.950 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.357 -2.516 -10.284 11.866 hybrid contribution 0.490 0.332 0.408 0.719 sum -4.867 -2.184 -9.876 11.225 Atomic orbital electron populations 1.22886 0.80342 1.03518 1.00241 1.87994 1.20727 1.27645 1.95355 1.22767 0.93763 0.84786 0.99706 1.21500 0.92860 0.98118 0.89383 1.43398 1.59866 1.07036 1.06871 1.19468 0.99562 0.80758 1.45863 0.89647 1.26227 0.93682 1.02341 0.96370 1.70146 1.00189 1.39747 1.43094 0.85475 0.79085 0.78496 0.79212 1.17782 1.18038 1.21389 1.20873 0.77052 0.85686 0.86970 1.90449 1.59808 1.16734 1.86851 1.21293 1.01509 0.98116 0.90609 0.86979 1.21417 0.95187 0.99549 0.97847 1.21549 1.02584 0.97241 0.93343 1.21536 0.94289 0.97984 0.99819 1.21136 1.01862 0.95176 0.91257 0.86531 1.24030 0.72678 0.89486 0.82265 1.90659 1.51059 1.22730 1.78597 1.86501 1.76530 1.41471 1.22599 1.23579 1.00083 0.89721 0.93369 1.20991 0.99998 0.96834 0.92690 0.94451 0.88502 0.92891 0.90945 0.95278 0.90928 0.92039 0.91854 0.90621 0.93535 0.88438 0.91584 0.91456 0.87833 0.92045 0.92483 0.84356 0.94995 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.40 -14.99 9.90 -148.98 -1.48 -16.47 16 3 C 0.07 2.58 6.27 71.98 0.45 3.03 16 4 C 0.11 4.80 5.82 86.38 0.50 5.30 16 5 N -0.45 -23.09 2.40 -635.56 -1.53 -24.62 16 6 C -0.33 -16.36 6.85 84.04 0.58 -15.79 16 7 H 0.09 4.28 7.46 -2.91 -0.02 4.26 16 8 C 0.02 0.79 3.41 84.93 0.29 1.08 16 9 N -0.89 -47.01 11.53 21.66 0.25 -46.76 16 10 Si 0.95 37.28 29.59 68.60 2.03 39.31 16 11 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 12 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 13 H -0.29 -11.49 7.11 99.48 0.71 -10.78 16 14 C 0.50 26.65 6.29 87.66 0.55 27.20 16 15 O -0.65 -38.05 15.56 -3.06 -0.05 -38.09 16 16 C -0.09 -4.26 1.63 -11.54 -0.02 -4.28 16 17 H 0.11 5.38 4.42 -2.39 -0.01 5.36 16 18 C -0.10 -3.82 5.06 30.59 0.15 -3.67 16 19 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 20 C -0.10 -2.60 5.14 30.59 0.16 -2.44 16 21 C -0.08 -2.48 2.63 -11.54 -0.03 -2.51 16 22 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 23 C 0.47 15.62 7.26 71.24 0.52 16.14 16 24 O -0.54 -21.87 15.73 21.94 0.35 -21.52 16 25 O -0.35 -9.28 10.47 -51.39 -0.54 -9.82 16 26 C 0.03 0.49 10.56 113.37 1.20 1.69 16 27 C -0.07 -2.89 3.11 30.59 0.10 -2.80 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 3.25 8.02 -2.39 -0.02 3.23 16 34 H 0.06 2.93 7.41 -2.39 -0.02 2.91 16 35 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 36 H 0.08 3.02 6.51 -2.39 -0.02 3.00 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.10 2.10 8.11 -2.39 -0.02 2.08 16 42 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 43 H 0.06 1.16 8.13 -2.38 -0.02 1.14 16 44 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.03 1.56 8.10 -2.38 -0.02 1.54 16 46 H 0.05 2.23 7.96 -2.39 -0.02 2.22 16 Total: -1.00 -70.02 369.60 5.86 -64.16 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.96 Total: 31.80 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 5.87 Total: 22.02 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.28 Total: -71.38 kcal Atomic # 8 Polarization: -84.19 SS G_CDS: -1.72 Total: -85.91 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -70.02 5.86 -64.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.805 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds