Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00525 * 2 1 4 4 C 1.52992 * 109.47335 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47315 * 67.07044 * 4 3 2 6 6 C 1.37102 * 119.99659 * 94.37250 * 5 4 3 7 7 H 1.08004 * 119.99597 * 221.49053 * 6 5 4 8 8 C 1.38936 * 120.00438 * 41.48932 * 6 5 4 9 9 N 1.31417 * 120.00429 * 212.41705 * 8 6 5 10 10 Si 1.86802 * 120.00105 * 32.14257 * 8 6 5 11 11 H 1.48499 * 109.47215 * 88.35402 * 10 8 6 12 12 H 1.48493 * 109.47594 * 208.35424 * 10 8 6 13 13 H 1.48501 * 109.47030 * 328.35577 * 10 8 6 14 14 C 1.34777 * 120.00253 * 274.36831 * 5 4 3 15 15 O 1.21294 * 119.99978 * 355.00637 * 14 5 4 16 16 C 1.50699 * 119.99982 * 175.00458 * 14 5 4 17 17 H 1.08995 * 109.47013 * 306.76944 * 16 14 5 18 18 C 1.52998 * 109.46829 * 66.77347 * 16 14 5 19 19 C 1.53001 * 109.47422 * 59.99800 * 18 16 14 20 20 C 1.53001 * 109.46812 * 60.00133 * 19 18 16 21 21 C 1.53001 * 109.46916 * 299.99748 * 20 19 18 22 22 H 1.09006 * 109.47321 * 300.00429 * 21 20 19 23 23 C 1.50704 * 109.47274 * 180.02562 * 21 20 19 24 24 O 1.20821 * 119.99910 * 240.00387 * 23 21 20 25 25 O 1.34231 * 119.99971 * 59.99446 * 23 21 20 26 26 C 1.45199 * 116.99650 * 180.02562 * 25 23 21 27 27 C 1.52999 * 109.47005 * 186.77128 * 16 14 5 28 28 H 1.09008 * 109.46506 * 300.00027 * 1 2 3 29 29 H 1.08996 * 109.47232 * 59.99799 * 1 2 3 30 30 H 1.08991 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46696 * 59.99932 * 3 2 1 32 32 H 1.09002 * 109.46732 * 300.00556 * 3 2 1 33 33 H 1.09004 * 109.47250 * 307.07516 * 4 3 2 34 34 H 1.08995 * 109.47484 * 187.07374 * 4 3 2 35 35 H 0.96999 * 120.00004 * 179.72117 * 9 8 6 36 36 H 1.09006 * 109.46971 * 179.97438 * 18 16 14 37 37 H 1.08997 * 109.46913 * 299.99563 * 18 16 14 38 38 H 1.08997 * 109.46916 * 299.99908 * 19 18 16 39 39 H 1.09000 * 109.47050 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.46659 * 180.02562 * 20 19 18 41 41 H 1.08995 * 109.47570 * 59.99621 * 20 19 18 42 42 H 1.09007 * 109.47119 * 60.00558 * 26 25 23 43 43 H 1.09003 * 109.47156 * 180.02562 * 26 25 23 44 44 H 1.09001 * 109.47327 * 300.00243 * 26 25 23 45 45 H 1.09000 * 109.47060 * 59.99905 * 27 16 14 46 46 H 1.08997 * 109.47200 * 180.02562 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9793 0.6097 -1.2730 6 6 4.3589 1.4328 -2.3017 7 1 4.0578 1.2062 -3.3138 8 6 5.1309 2.5584 -2.0421 9 7 4.9878 3.6375 -2.7783 10 14 6.3670 2.5406 -0.6416 11 1 7.6685 2.0247 -1.1367 12 1 6.5467 3.9201 -0.1223 13 1 5.8685 1.6628 0.4474 14 6 4.0145 -0.7281 -1.4324 15 8 3.7661 -1.4572 -0.4953 16 6 4.3623 -1.3182 -2.7747 17 1 3.7132 -0.8906 -3.5387 18 6 5.8212 -1.0006 -3.1087 19 6 6.7324 -1.6008 -2.0362 20 6 6.5379 -3.1178 -1.9924 21 6 5.0789 -3.4353 -1.6582 22 1 4.8273 -3.0085 -0.6873 23 6 4.8874 -4.9295 -1.6145 24 8 4.1027 -5.4602 -2.3644 25 8 5.5886 -5.6708 -0.7424 26 6 5.3533 -7.1035 -0.7565 27 6 4.1678 -2.8351 -2.7308 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8491 0.5381 0.8190 34 1 3.9783 2.1724 0.1259 35 1 5.5239 4.4247 -2.5945 36 1 6.0730 -1.4278 -4.0795 37 1 5.9598 0.0801 -3.1400 38 1 6.4808 -1.1740 -1.0653 39 1 7.7718 -1.3749 -2.2744 40 1 7.1867 -3.5453 -1.2279 41 1 6.7894 -3.5446 -2.9632 42 1 5.5964 -7.5020 -1.7415 43 1 5.9815 -7.5823 -0.0053 44 1 4.3050 -7.3018 -0.5329 45 1 3.1284 -3.0614 -2.4927 46 1 4.4198 -3.2620 -3.7015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = -166.920772 kcal Electronic energy + Delta-G solvation = -28671.071834 eV Core-core repulsion = 24754.227923 eV Total energy + Delta-G solvation = -3916.843911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55338 -39.41413 -37.48595 -36.51275 -35.95136 -34.77331 -32.05617 -31.32957 -30.35300 -29.09009 -27.55864 -25.86462 -24.92422 -23.46769 -23.24325 -21.69440 -20.67514 -19.90440 -18.62908 -17.35128 -16.67092 -16.51075 -16.16598 -15.97826 -15.68783 -15.38503 -14.79075 -14.59530 -14.49470 -13.91236 -13.86105 -13.60597 -13.24291 -12.90274 -12.68998 -12.50334 -12.29953 -12.13364 -11.98828 -11.89761 -11.64317 -11.44893 -11.30317 -11.15317 -10.96828 -10.66159 -10.58670 -10.56003 -10.42222 -10.32916 -10.18540 -9.91814 -9.66147 -9.58773 -9.13099 -9.01993 -8.26174 -7.63559 -6.58595 -4.06430 2.52115 2.97624 3.07957 3.20918 3.28406 3.83710 4.11570 4.37424 4.43975 4.85691 4.95035 5.12613 5.15875 5.20135 5.26163 5.45660 5.58844 5.65472 5.66799 5.68630 5.74442 5.85909 5.91145 5.94574 5.96238 6.00063 6.01156 6.05334 6.13635 6.26858 6.33528 6.44948 6.47057 6.57242 6.62946 6.67211 6.74458 6.77844 6.94350 7.11916 7.37664 7.76104 8.03224 8.11850 8.27527 8.97846 9.41429 9.80869 10.52155 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.005472 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.632277 B = 5115.902049 C = 6315.787996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.463 5.463 6 C -0.350 4.350 7 H 0.099 0.901 8 C 0.078 3.922 9 N -0.844 5.844 10 Si 0.844 3.156 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.255 1.255 14 C 0.498 3.502 15 O -0.577 6.577 16 C -0.086 4.086 17 H 0.091 0.909 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.094 4.094 22 H 0.150 0.850 23 C 0.469 3.531 24 O -0.518 6.518 25 O -0.360 6.360 26 C 0.034 3.966 27 C -0.076 4.076 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.274 0.726 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -9.276 2.870 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.184 5.184 6 C -0.476 4.476 7 H 0.117 0.883 8 C -0.131 4.131 9 N -0.477 5.477 10 Si 0.669 3.331 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.179 1.179 14 C 0.288 3.712 15 O -0.461 6.461 16 C -0.107 4.107 17 H 0.109 0.891 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.112 4.112 22 H 0.167 0.833 23 C 0.313 3.687 24 O -0.406 6.406 25 O -0.277 6.277 26 C -0.060 4.060 27 C -0.114 4.114 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.406 -9.760 3.061 10.237 hybrid contribution 0.326 0.359 0.498 0.695 sum 0.732 -9.402 3.559 10.079 Atomic orbital electron populations 1.22633 0.83016 1.01794 0.98995 1.88132 1.17768 1.27436 1.95133 1.23018 0.95550 0.84799 0.99547 1.21603 0.91135 0.98751 0.89025 1.43517 1.58164 1.04217 1.12508 1.18841 1.33453 1.05843 0.89498 0.88309 1.25312 0.96746 0.94381 0.96668 1.69949 1.36127 1.01091 1.40520 0.87436 0.83760 0.77930 0.83990 1.19791 1.21123 1.17887 1.20278 0.78808 0.82509 0.89606 1.90407 1.53427 1.59523 1.42719 1.20992 0.98670 0.94011 0.97001 0.89134 1.21628 0.92289 1.04244 0.97235 1.21522 0.99523 0.93827 1.00563 1.21497 0.93741 0.97643 1.01344 1.21634 0.97865 0.85264 1.06478 0.83309 1.24326 0.76765 0.91307 0.76273 1.90600 1.35184 1.74231 1.40545 1.86554 1.62786 1.20809 1.57559 1.23182 1.02283 0.77886 1.02630 1.21181 0.99386 0.93979 0.96879 0.95094 0.94741 0.90442 0.94165 0.92601 0.90968 0.90316 0.91557 0.92493 0.87877 0.91592 0.91984 0.91458 0.92247 0.92279 0.88534 0.92187 0.91244 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.37 9.28 -46.94 -0.44 -7.81 16 3 C 0.05 0.94 6.27 37.15 0.23 1.17 16 4 C 0.12 2.52 4.12 -4.04 -0.02 2.51 16 5 N -0.46 -10.41 2.07 -114.81 -0.24 -10.65 16 6 C -0.35 -8.31 6.70 -14.94 -0.10 -8.41 16 7 H 0.10 2.49 7.13 -52.48 -0.37 2.11 16 8 C 0.08 1.89 5.01 -17.47 -0.09 1.80 16 9 N -0.84 -21.66 13.96 55.49 0.77 -20.89 16 10 Si 0.84 18.59 26.57 -169.99 -4.52 14.07 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.25 -5.55 5.82 56.52 0.33 -5.22 16 14 C 0.50 10.85 5.12 -10.99 -0.06 10.79 16 15 O -0.58 -13.42 12.12 -6.16 -0.07 -13.50 16 16 C -0.09 -1.62 2.25 -91.77 -0.21 -1.83 16 17 H 0.09 1.73 7.49 -51.93 -0.39 1.34 16 18 C -0.12 -2.05 5.25 -26.73 -0.14 -2.19 16 19 C -0.12 -1.95 5.70 -26.73 -0.15 -2.10 16 20 C -0.10 -1.60 5.14 -26.73 -0.14 -1.73 16 21 C -0.09 -1.63 2.34 -91.77 -0.21 -1.84 16 22 H 0.15 2.94 5.27 -51.93 -0.27 2.66 16 23 C 0.47 8.04 7.26 36.01 0.26 8.30 16 24 O -0.52 -9.79 15.73 -18.75 -0.29 -10.09 16 25 O -0.36 -5.44 10.47 -39.26 -0.41 -5.85 16 26 C 0.03 0.38 10.56 101.05 1.07 1.45 16 27 C -0.08 -1.36 3.71 -26.73 -0.10 -1.46 16 28 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.57 7.49 -51.93 -0.39 1.18 16 34 H 0.08 1.65 4.94 -51.93 -0.26 1.40 16 35 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 2.05 5.80 -51.93 -0.30 1.75 16 38 H 0.07 1.25 7.22 -51.93 -0.37 0.87 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 46 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -28.62 358.17 -5.81 -34.43 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.48 Total: 6.82 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 1.46 Total: 8.06 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.54 Total: -31.54 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.22 Total: -37.25 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.52 Total: 14.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.62 -5.81 -34.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.488 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds