Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00525 * 2 1 4 4 C 1.52992 * 109.47335 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47315 * 67.07044 * 4 3 2 6 6 C 1.37102 * 119.99659 * 94.37250 * 5 4 3 7 7 H 1.08004 * 119.99597 * 221.49053 * 6 5 4 8 8 C 1.38936 * 120.00438 * 41.48932 * 6 5 4 9 9 N 1.31417 * 120.00429 * 212.41705 * 8 6 5 10 10 Si 1.86802 * 120.00105 * 32.14257 * 8 6 5 11 11 H 1.48499 * 109.47215 * 88.35402 * 10 8 6 12 12 H 1.48493 * 109.47594 * 208.35424 * 10 8 6 13 13 H 1.48501 * 109.47030 * 328.35577 * 10 8 6 14 14 C 1.34777 * 120.00253 * 274.36831 * 5 4 3 15 15 O 1.21294 * 119.99978 * 355.00637 * 14 5 4 16 16 C 1.50699 * 119.99982 * 175.00458 * 14 5 4 17 17 H 1.08995 * 109.47013 * 306.76944 * 16 14 5 18 18 C 1.52998 * 109.46829 * 66.77347 * 16 14 5 19 19 C 1.53001 * 109.47422 * 59.99800 * 18 16 14 20 20 C 1.53001 * 109.46812 * 60.00133 * 19 18 16 21 21 C 1.53001 * 109.46916 * 299.99748 * 20 19 18 22 22 H 1.09006 * 109.47321 * 300.00429 * 21 20 19 23 23 C 1.50704 * 109.47274 * 180.02562 * 21 20 19 24 24 O 1.20821 * 119.99910 * 240.00387 * 23 21 20 25 25 O 1.34231 * 119.99971 * 59.99446 * 23 21 20 26 26 C 1.45199 * 116.99650 * 180.02562 * 25 23 21 27 27 C 1.52999 * 109.47005 * 186.77128 * 16 14 5 28 28 H 1.09008 * 109.46506 * 300.00027 * 1 2 3 29 29 H 1.08996 * 109.47232 * 59.99799 * 1 2 3 30 30 H 1.08991 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46696 * 59.99932 * 3 2 1 32 32 H 1.09002 * 109.46732 * 300.00556 * 3 2 1 33 33 H 1.09004 * 109.47250 * 307.07516 * 4 3 2 34 34 H 1.08995 * 109.47484 * 187.07374 * 4 3 2 35 35 H 0.96999 * 120.00004 * 179.72117 * 9 8 6 36 36 H 1.09006 * 109.46971 * 179.97438 * 18 16 14 37 37 H 1.08997 * 109.46913 * 299.99563 * 18 16 14 38 38 H 1.08997 * 109.46916 * 299.99908 * 19 18 16 39 39 H 1.09000 * 109.47050 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.46659 * 180.02562 * 20 19 18 41 41 H 1.08995 * 109.47570 * 59.99621 * 20 19 18 42 42 H 1.09007 * 109.47119 * 60.00558 * 26 25 23 43 43 H 1.09003 * 109.47156 * 180.02562 * 26 25 23 44 44 H 1.09001 * 109.47327 * 300.00243 * 26 25 23 45 45 H 1.09000 * 109.47060 * 59.99905 * 27 16 14 46 46 H 1.08997 * 109.47200 * 180.02562 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9793 0.6097 -1.2730 6 6 4.3589 1.4328 -2.3017 7 1 4.0578 1.2062 -3.3138 8 6 5.1309 2.5584 -2.0421 9 7 4.9878 3.6375 -2.7783 10 14 6.3670 2.5406 -0.6416 11 1 7.6685 2.0247 -1.1367 12 1 6.5467 3.9201 -0.1223 13 1 5.8685 1.6628 0.4474 14 6 4.0145 -0.7281 -1.4324 15 8 3.7661 -1.4572 -0.4953 16 6 4.3623 -1.3182 -2.7747 17 1 3.7132 -0.8906 -3.5387 18 6 5.8212 -1.0006 -3.1087 19 6 6.7324 -1.6008 -2.0362 20 6 6.5379 -3.1178 -1.9924 21 6 5.0789 -3.4353 -1.6582 22 1 4.8273 -3.0085 -0.6873 23 6 4.8874 -4.9295 -1.6145 24 8 4.1027 -5.4602 -2.3644 25 8 5.5886 -5.6708 -0.7424 26 6 5.3533 -7.1035 -0.7565 27 6 4.1678 -2.8351 -2.7308 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8491 0.5381 0.8190 34 1 3.9783 2.1724 0.1259 35 1 5.5239 4.4247 -2.5945 36 1 6.0730 -1.4278 -4.0795 37 1 5.9598 0.0801 -3.1400 38 1 6.4808 -1.1740 -1.0653 39 1 7.7718 -1.3749 -2.2744 40 1 7.1867 -3.5453 -1.2279 41 1 6.7894 -3.5446 -2.9632 42 1 5.5964 -7.5020 -1.7415 43 1 5.9815 -7.5823 -0.0053 44 1 4.3050 -7.3018 -0.5329 45 1 3.1284 -3.0614 -2.4927 46 1 4.4198 -3.2620 -3.7015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = -182.806469 kcal Electronic energy + Delta-G solvation = -28671.760689 eV Core-core repulsion = 24754.227923 eV Total energy + Delta-G solvation = -3917.532766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93888 -40.94989 -38.95548 -37.93642 -37.31396 -36.54765 -33.91882 -32.76722 -31.75570 -30.64004 -28.56243 -27.19956 -26.76788 -24.81601 -24.74377 -23.17819 -22.08526 -21.33456 -20.35129 -18.78300 -18.21006 -17.91751 -17.56394 -17.34141 -17.31047 -16.96836 -16.32543 -16.09358 -15.90832 -15.51751 -15.32792 -14.88588 -14.71867 -14.30810 -14.28864 -14.04209 -13.62729 -13.53312 -13.48003 -13.23447 -12.96432 -12.85943 -12.82447 -12.69214 -12.62862 -12.26835 -12.03619 -11.92591 -11.81418 -11.78636 -11.69993 -11.52800 -11.10894 -10.99056 -10.83521 -10.53091 -10.00831 -9.43689 -8.48228 -5.96340 1.19223 1.30122 1.41969 1.50004 1.80927 2.10830 2.28796 2.67922 2.98328 3.08718 3.65849 3.83179 3.88945 4.16960 4.23936 4.29051 4.30283 4.32715 4.33325 4.36558 4.40943 4.50824 4.53951 4.54284 4.58545 4.60501 4.67361 4.68759 4.80749 4.81191 4.84561 4.97848 5.07977 5.08905 5.23208 5.27078 5.37854 5.38672 5.53609 5.56169 5.65308 6.22405 6.34046 6.44544 6.75280 7.10887 7.60857 8.02659 8.66152 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.005472 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.632277 B = 5115.902049 C = 6315.787996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.055 3.945 4 C 0.113 3.887 5 N -0.472 5.472 6 C -0.338 4.338 7 H 0.078 0.922 8 C 0.051 3.949 9 N -0.879 5.879 10 Si 0.890 3.110 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.254 1.254 14 C 0.495 3.505 15 O -0.592 6.592 16 C -0.084 4.084 17 H 0.084 0.916 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.093 4.093 22 H 0.125 0.875 23 C 0.474 3.526 24 O -0.540 6.540 25 O -0.364 6.364 26 C 0.026 3.974 27 C -0.068 4.068 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.278 0.722 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.132 0.868 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -10.582 3.383 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.193 5.193 6 C -0.465 4.465 7 H 0.096 0.904 8 C -0.155 4.155 9 N -0.515 5.515 10 Si 0.714 3.286 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.178 1.178 14 C 0.286 3.714 15 O -0.477 6.477 16 C -0.105 4.105 17 H 0.102 0.898 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.133 4.133 21 C -0.112 4.112 22 H 0.142 0.858 23 C 0.319 3.681 24 O -0.430 6.430 25 O -0.280 6.280 26 C -0.067 4.067 27 C -0.106 4.106 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.151 0.849 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.317 -11.076 3.594 11.719 hybrid contribution -0.033 0.663 0.371 0.761 sum 1.283 -10.413 3.966 11.216 Atomic orbital electron populations 1.22834 0.80667 1.02977 1.00372 1.88075 1.20443 1.27841 1.95391 1.22900 0.94102 0.84867 1.00359 1.21666 0.92855 0.98348 0.88193 1.43618 1.58610 1.04474 1.12626 1.18620 1.33080 1.05690 0.89066 0.90407 1.25653 0.97549 0.94019 0.98306 1.69989 1.37311 1.01770 1.42409 0.86716 0.82044 0.77817 0.82021 1.19607 1.20905 1.17812 1.20743 0.78016 0.82190 0.90457 1.90405 1.53895 1.59753 1.43645 1.21005 0.99663 0.94668 0.95148 0.89761 1.21576 0.91408 1.02909 0.99053 1.21499 1.00388 0.94680 0.98630 1.21464 0.92363 0.96564 1.02950 1.21490 0.99145 0.85702 1.04817 0.85775 1.24149 0.76476 0.91276 0.76211 1.90590 1.36133 1.74663 1.41624 1.86525 1.62092 1.22840 1.56565 1.23553 1.03132 0.75671 1.04352 1.21084 0.98452 0.93092 0.98020 0.92717 0.94265 0.89445 0.91114 0.93861 0.91760 0.90362 0.91242 0.89830 0.90334 0.94308 0.89825 0.89958 0.90221 0.91626 0.84947 0.92456 0.93338 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -15.90 9.28 -137.79 -1.28 -17.18 16 3 C 0.06 2.10 6.27 71.98 0.45 2.56 16 4 C 0.11 4.81 4.12 86.38 0.36 5.17 16 5 N -0.47 -21.48 2.07 -635.55 -1.32 -22.79 16 6 C -0.34 -16.31 6.70 84.04 0.56 -15.74 16 7 H 0.08 4.05 7.13 -2.91 -0.02 4.03 16 8 C 0.05 2.49 5.01 84.92 0.43 2.91 16 9 N -0.88 -45.62 13.96 21.66 0.30 -45.31 16 10 Si 0.89 38.26 26.57 68.60 1.82 40.08 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.25 -10.81 5.82 99.48 0.58 -10.23 16 14 C 0.50 21.84 5.12 87.66 0.45 22.29 16 15 O -0.59 -27.96 12.12 8.12 0.10 -27.87 16 16 C -0.08 -3.18 2.25 -11.54 -0.03 -3.21 16 17 H 0.08 3.28 7.49 -2.39 -0.02 3.26 16 18 C -0.11 -3.83 5.25 30.59 0.16 -3.67 16 19 C -0.11 -3.63 5.70 30.60 0.17 -3.45 16 20 C -0.10 -2.70 5.14 30.59 0.16 -2.54 16 21 C -0.09 -3.13 2.34 -11.54 -0.03 -3.16 16 22 H 0.12 4.91 5.27 -2.38 -0.01 4.90 16 23 C 0.47 15.60 7.26 71.24 0.52 16.12 16 24 O -0.54 -19.86 15.73 21.98 0.35 -19.51 16 25 O -0.36 -10.26 10.47 -51.43 -0.54 -10.80 16 26 C 0.03 0.52 10.56 113.37 1.20 1.71 16 27 C -0.07 -2.41 3.71 30.59 0.11 -2.30 16 28 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.81 7.49 -2.38 -0.02 2.80 16 34 H 0.08 3.28 4.94 -2.39 -0.01 3.27 16 35 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 36 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.08 3.11 5.80 -2.39 -0.01 3.10 16 38 H 0.04 1.43 7.22 -2.39 -0.02 1.42 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.09 8.11 -2.39 -0.02 2.07 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.06 1.23 8.13 -2.38 -0.02 1.22 16 43 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 45 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 46 H 0.08 2.55 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -61.69 358.17 6.03 -55.66 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.84 Total: 28.97 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.76 Total: 18.75 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -1.01 Total: -68.11 kcal Atomic # 8 Polarization: -73.98 SS G_CDS: -1.37 Total: -75.35 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.82 Total: 40.08 kcal Total: -61.69 6.03 -55.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.147 kcal (2) G-P(sol) polarization free energy of solvation -61.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds