Wall clock time and date at job start Fri Apr 10 2020 18:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00248 * 2 1 4 4 C 1.52998 * 109.47459 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47187 * 64.99726 * 4 3 2 6 6 C 1.37098 * 119.99914 * 90.00002 * 5 4 3 7 7 H 1.07996 * 119.99921 * 309.30117 * 6 5 4 8 8 C 1.38953 * 119.99804 * 129.29964 * 6 5 4 9 9 N 1.31411 * 119.99803 * 169.74349 * 8 6 5 10 10 Si 1.86797 * 120.00097 * 349.74371 * 8 6 5 11 11 H 1.48501 * 109.47084 * 268.62704 * 10 8 6 12 12 H 1.48503 * 109.47463 * 28.62440 * 10 8 6 13 13 H 1.48495 * 109.47167 * 148.62603 * 10 8 6 14 14 C 1.34776 * 120.00237 * 270.00160 * 5 4 3 15 15 O 1.21294 * 119.99697 * 353.69335 * 14 5 4 16 16 C 1.50700 * 120.00260 * 173.69070 * 14 5 4 17 17 H 1.08998 * 109.47177 * 59.04962 * 16 14 5 18 18 C 1.53004 * 109.46910 * 299.05386 * 16 14 5 19 19 C 1.53003 * 109.46885 * 299.99408 * 18 16 14 20 20 C 1.53000 * 109.47604 * 300.00332 * 19 18 16 21 21 C 1.52999 * 109.46775 * 59.99870 * 20 19 18 22 22 H 1.09006 * 109.47592 * 60.00337 * 21 20 19 23 23 C 1.50705 * 109.46841 * 179.97438 * 21 20 19 24 24 O 1.20827 * 119.99707 * 120.00159 * 23 21 20 25 25 O 1.34229 * 120.00206 * 300.00273 * 23 21 20 26 26 C 1.45196 * 116.99813 * 179.97438 * 25 23 21 27 27 C 1.52998 * 109.47426 * 299.99963 * 21 20 19 28 28 H 1.08995 * 109.47437 * 59.99400 * 1 2 3 29 29 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46757 * 299.99665 * 1 2 3 31 31 H 1.08996 * 109.47250 * 60.00184 * 3 2 1 32 32 H 1.08997 * 109.47057 * 300.00368 * 3 2 1 33 33 H 1.09002 * 109.47296 * 305.00289 * 4 3 2 34 34 H 1.09000 * 109.47482 * 185.00136 * 4 3 2 35 35 H 0.97002 * 120.00017 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47365 * 59.99993 * 18 16 14 37 37 H 1.09000 * 109.46713 * 179.97438 * 18 16 14 38 38 H 1.09000 * 109.46994 * 60.00724 * 19 18 16 39 39 H 1.09004 * 109.46762 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47321 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.46551 * 300.00238 * 20 19 18 42 42 H 1.08993 * 109.47148 * 299.99627 * 26 25 23 43 43 H 1.09005 * 109.46991 * 60.00248 * 26 25 23 44 44 H 1.09006 * 109.46835 * 179.97438 * 26 25 23 45 45 H 1.09005 * 109.47483 * 300.00415 * 27 21 20 46 46 H 1.08999 * 109.47414 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2664 1.3469 -2.3402 7 1 3.5595 2.0923 -2.6736 8 6 5.4706 1.1811 -3.0135 9 7 5.6670 1.7811 -4.1660 10 14 6.8101 0.1052 -2.2803 11 1 7.7115 0.9380 -1.4440 12 1 6.1918 -0.9517 -1.4402 13 1 7.5920 -0.5258 -3.3737 14 6 4.0949 -0.7755 -1.3356 15 8 3.9492 -1.4597 -0.3446 16 6 4.4090 -1.4237 -2.6593 17 1 5.3561 -1.0385 -3.0368 18 6 3.2949 -1.1073 -3.6592 19 6 1.9653 -1.6481 -3.1293 20 6 2.0687 -3.1632 -2.9434 21 6 3.1827 -3.4796 -1.9436 22 1 2.9556 -3.0108 -0.9861 23 6 3.2841 -4.9720 -1.7600 24 8 4.3142 -5.5447 -2.0260 25 8 2.2300 -5.6649 -1.3011 26 6 2.3993 -7.0990 -1.1498 27 6 4.5123 -2.9389 -2.4734 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1765 0.0889 35 1 6.5075 1.6651 -4.6361 36 1 3.2213 -0.0279 -3.7916 37 1 3.5224 -1.5758 -4.6167 38 1 1.7381 -1.1792 -2.1718 39 1 1.1716 -1.4222 -3.8414 40 1 1.1216 -3.5484 -2.5655 41 1 2.2959 -3.6320 -3.9009 42 1 2.6414 -7.5403 -2.1165 43 1 3.2086 -7.2971 -0.4469 44 1 1.4750 -7.5360 -0.7717 45 1 4.7395 -3.4077 -3.4309 46 1 5.3059 -3.1638 -1.7609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:24 Heat of formation + Delta-G solvation = -153.284966 kcal Electronic energy + Delta-G solvation = -29403.459689 eV Core-core repulsion = 25487.207071 eV Total energy + Delta-G solvation = -3916.252618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59617 -39.57551 -37.45193 -36.56945 -35.93553 -34.74726 -32.31841 -31.10897 -30.32723 -29.14475 -27.53844 -25.94523 -24.60030 -23.55124 -23.30448 -21.62499 -20.67185 -19.86778 -18.95271 -17.29205 -17.07519 -16.48030 -16.10436 -15.96743 -15.72117 -15.25848 -14.92750 -14.53232 -14.38259 -14.04745 -13.67114 -13.61710 -13.21025 -13.06499 -12.66139 -12.39663 -12.34205 -12.19228 -12.03267 -11.86986 -11.65589 -11.42258 -11.28122 -11.12832 -10.67108 -10.64261 -10.57370 -10.53267 -10.48760 -10.21675 -10.07738 -9.97910 -9.54525 -9.27756 -9.16186 -8.94992 -8.33503 -7.55171 -6.46377 -4.22128 2.54031 2.97934 3.07377 3.20027 3.31024 3.89195 4.10902 4.29711 4.49756 4.91842 4.98565 5.14411 5.19295 5.21853 5.27281 5.48368 5.52266 5.60657 5.69100 5.72980 5.79102 5.82990 5.84681 5.90662 5.93082 5.99398 6.03721 6.08250 6.17106 6.23306 6.35220 6.49822 6.53827 6.61123 6.62703 6.69636 6.79000 6.83998 7.04806 7.30582 7.63989 7.73218 7.78621 8.05446 8.47176 9.00675 9.32535 9.79036 10.62146 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.006760 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.128466 B = 4141.122313 C = 5336.150433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.051 3.949 4 C 0.112 3.888 5 N -0.476 5.476 6 C -0.339 4.339 7 H 0.098 0.902 8 C 0.073 3.927 9 N -0.864 5.864 10 Si 0.857 3.143 11 H -0.284 1.284 12 H -0.246 1.246 13 H -0.278 1.278 14 C 0.516 3.484 15 O -0.578 6.578 16 C -0.089 4.089 17 H 0.077 0.923 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.088 4.088 22 H 0.146 0.854 23 C 0.469 3.531 24 O -0.517 6.517 25 O -0.359 6.359 26 C 0.034 3.966 27 C -0.082 4.082 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.275 0.725 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 -6.765 3.423 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.027 4.027 4 C -0.012 4.012 5 N -0.198 5.198 6 C -0.467 4.467 7 H 0.115 0.885 8 C -0.134 4.134 9 N -0.500 5.500 10 Si 0.684 3.316 11 H -0.211 1.211 12 H -0.171 1.171 13 H -0.204 1.204 14 C 0.306 3.694 15 O -0.462 6.462 16 C -0.109 4.109 17 H 0.094 0.906 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.107 4.107 22 H 0.164 0.836 23 C 0.313 3.687 24 O -0.405 6.405 25 O -0.276 6.276 26 C -0.060 4.060 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.084 0.916 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.542 -7.409 3.668 11.888 hybrid contribution 0.862 -0.352 0.104 0.937 sum -7.680 -7.762 3.773 11.553 Atomic orbital electron populations 1.22651 0.82863 1.01973 0.99041 1.88097 1.17877 1.27494 1.95059 1.22984 0.95670 0.84810 0.99248 1.21458 0.91251 0.98874 0.89623 1.43511 1.61912 1.03990 1.10400 1.18832 1.02742 1.19771 1.05332 0.88498 1.25611 0.96943 0.95663 0.95215 1.69639 1.25789 1.41577 1.12955 0.87400 0.82226 0.81672 0.80257 1.21127 1.17057 1.20394 1.20092 0.77290 0.82601 0.89389 1.90431 1.54735 1.62811 1.38181 1.21320 1.00305 0.93836 0.95463 0.90564 1.21561 0.92384 1.04820 0.95999 1.21591 0.97880 0.93754 1.02437 1.21497 0.96946 0.98084 0.97632 1.21509 0.98418 0.85624 1.05113 0.83645 1.24313 0.80722 0.91507 0.72149 1.90605 1.30646 1.71693 1.47537 1.86550 1.41667 1.22020 1.77385 1.23183 1.02958 0.77918 1.01945 1.21228 0.95498 0.94284 1.00958 0.94655 0.90286 0.95074 0.94044 0.93124 0.90891 0.89741 0.91432 0.87390 0.92906 0.90171 0.92292 0.91483 0.92417 0.92271 0.92210 0.88506 0.91620 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.60 8.81 -35.48 -0.31 -6.91 16 3 C 0.05 0.86 6.28 37.16 0.23 1.09 16 4 C 0.11 2.17 5.86 -4.04 -0.02 2.15 16 5 N -0.48 -10.69 2.04 -114.81 -0.23 -10.92 16 6 C -0.34 -8.18 7.26 -14.93 -0.11 -8.29 16 7 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 8 C 0.07 1.83 4.37 -17.47 -0.08 1.75 16 9 N -0.86 -22.68 13.96 55.50 0.77 -21.90 16 10 Si 0.86 20.44 24.36 -169.99 -4.14 16.30 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.25 -6.00 4.50 56.52 0.25 -5.75 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.52 11.82 2.38 -10.99 -0.03 11.79 16 15 O -0.58 -14.04 12.73 5.30 0.07 -13.97 16 16 C -0.09 -1.92 1.28 -91.77 -0.12 -2.04 16 17 H 0.08 1.77 2.55 -51.93 -0.13 1.64 16 18 C -0.11 -2.17 5.14 -26.73 -0.14 -2.30 16 19 C -0.12 -2.05 5.70 -26.73 -0.15 -2.20 16 20 C -0.10 -1.67 5.14 -26.73 -0.14 -1.81 16 21 C -0.09 -1.64 2.33 -91.77 -0.21 -1.85 16 22 H 0.15 3.02 5.48 -51.93 -0.28 2.74 16 23 C 0.47 8.47 7.26 36.01 0.26 8.73 16 24 O -0.52 -10.34 15.73 -18.75 -0.30 -10.63 16 25 O -0.36 -5.60 10.47 -39.26 -0.41 -6.01 16 26 C 0.03 0.39 10.56 101.05 1.07 1.46 16 27 C -0.08 -1.66 3.66 -26.73 -0.10 -1.76 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.47 7.35 -51.93 -0.38 1.09 16 34 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 35 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.11 2.38 5.69 -51.93 -0.30 2.08 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.52 6.24 -51.93 -0.32 1.20 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 43 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 46 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -29.39 350.58 -5.14 -34.52 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.45 Total: 5.98 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 1.58 Total: 8.26 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.54 Total: -32.82 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.95 Total: -37.53 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.14 Total: 16.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.39 -5.14 -34.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.762 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds