Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00248 * 2 1 4 4 C 1.52998 * 109.47459 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47187 * 64.99726 * 4 3 2 6 6 C 1.37098 * 119.99914 * 90.00002 * 5 4 3 7 7 H 1.07996 * 119.99921 * 309.30117 * 6 5 4 8 8 C 1.38953 * 119.99804 * 129.29964 * 6 5 4 9 9 N 1.31411 * 119.99803 * 169.74349 * 8 6 5 10 10 Si 1.86797 * 120.00097 * 349.74371 * 8 6 5 11 11 H 1.48501 * 109.47084 * 268.62704 * 10 8 6 12 12 H 1.48503 * 109.47463 * 28.62440 * 10 8 6 13 13 H 1.48495 * 109.47167 * 148.62603 * 10 8 6 14 14 C 1.34776 * 120.00237 * 270.00160 * 5 4 3 15 15 O 1.21294 * 119.99697 * 353.69335 * 14 5 4 16 16 C 1.50700 * 120.00260 * 173.69070 * 14 5 4 17 17 H 1.08998 * 109.47177 * 59.04962 * 16 14 5 18 18 C 1.53004 * 109.46910 * 299.05386 * 16 14 5 19 19 C 1.53003 * 109.46885 * 299.99408 * 18 16 14 20 20 C 1.53000 * 109.47604 * 300.00332 * 19 18 16 21 21 C 1.52999 * 109.46775 * 59.99870 * 20 19 18 22 22 H 1.09006 * 109.47592 * 60.00337 * 21 20 19 23 23 C 1.50705 * 109.46841 * 179.97438 * 21 20 19 24 24 O 1.20827 * 119.99707 * 120.00159 * 23 21 20 25 25 O 1.34229 * 120.00206 * 300.00273 * 23 21 20 26 26 C 1.45196 * 116.99813 * 179.97438 * 25 23 21 27 27 C 1.52998 * 109.47426 * 299.99963 * 21 20 19 28 28 H 1.08995 * 109.47437 * 59.99400 * 1 2 3 29 29 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46757 * 299.99665 * 1 2 3 31 31 H 1.08996 * 109.47250 * 60.00184 * 3 2 1 32 32 H 1.08997 * 109.47057 * 300.00368 * 3 2 1 33 33 H 1.09002 * 109.47296 * 305.00289 * 4 3 2 34 34 H 1.09000 * 109.47482 * 185.00136 * 4 3 2 35 35 H 0.97002 * 120.00017 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47365 * 59.99993 * 18 16 14 37 37 H 1.09000 * 109.46713 * 179.97438 * 18 16 14 38 38 H 1.09000 * 109.46994 * 60.00724 * 19 18 16 39 39 H 1.09004 * 109.46762 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47321 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.46551 * 300.00238 * 20 19 18 42 42 H 1.08993 * 109.47148 * 299.99627 * 26 25 23 43 43 H 1.09005 * 109.46991 * 60.00248 * 26 25 23 44 44 H 1.09006 * 109.46835 * 179.97438 * 26 25 23 45 45 H 1.09005 * 109.47483 * 300.00415 * 27 21 20 46 46 H 1.08999 * 109.47414 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2664 1.3469 -2.3402 7 1 3.5595 2.0923 -2.6736 8 6 5.4706 1.1811 -3.0135 9 7 5.6670 1.7811 -4.1660 10 14 6.8101 0.1052 -2.2803 11 1 7.7115 0.9380 -1.4440 12 1 6.1918 -0.9517 -1.4402 13 1 7.5920 -0.5258 -3.3737 14 6 4.0949 -0.7755 -1.3356 15 8 3.9492 -1.4597 -0.3446 16 6 4.4090 -1.4237 -2.6593 17 1 5.3561 -1.0385 -3.0368 18 6 3.2949 -1.1073 -3.6592 19 6 1.9653 -1.6481 -3.1293 20 6 2.0687 -3.1632 -2.9434 21 6 3.1827 -3.4796 -1.9436 22 1 2.9556 -3.0108 -0.9861 23 6 3.2841 -4.9720 -1.7600 24 8 4.3142 -5.5447 -2.0260 25 8 2.2300 -5.6649 -1.3011 26 6 2.3993 -7.0990 -1.1498 27 6 4.5123 -2.9389 -2.4734 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1765 0.0889 35 1 6.5075 1.6651 -4.6361 36 1 3.2213 -0.0279 -3.7916 37 1 3.5224 -1.5758 -4.6167 38 1 1.7381 -1.1792 -2.1718 39 1 1.1716 -1.4222 -3.8414 40 1 1.1216 -3.5484 -2.5655 41 1 2.2959 -3.6320 -3.9009 42 1 2.6414 -7.5403 -2.1165 43 1 3.2086 -7.2971 -0.4469 44 1 1.4750 -7.5360 -0.7717 45 1 4.7395 -3.4077 -3.4309 46 1 5.3059 -3.1638 -1.7609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -171.192515 kcal Electronic energy + Delta-G solvation = -29404.236218 eV Core-core repulsion = 25487.207071 eV Total energy + Delta-G solvation = -3917.029147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10124 -41.13394 -38.80581 -37.98981 -37.35087 -36.57825 -34.12845 -32.69548 -31.83572 -30.63115 -28.58604 -27.13507 -26.46409 -25.04314 -24.75913 -23.10479 -22.13020 -21.38089 -20.71534 -18.87748 -18.64637 -17.90556 -17.44562 -17.35737 -17.15415 -16.91637 -16.34252 -16.06161 -15.88813 -15.69687 -15.21512 -14.99103 -14.84102 -14.51557 -14.10621 -14.03970 -13.91204 -13.48603 -13.36366 -13.32820 -12.97621 -12.88723 -12.83784 -12.61513 -12.44595 -12.33845 -12.05275 -11.86927 -11.82406 -11.76988 -11.72758 -11.54884 -11.13039 -10.95341 -10.76570 -10.41970 -10.12482 -9.37152 -8.44623 -6.17972 1.12824 1.14744 1.25706 1.35691 1.75450 2.05589 2.19088 2.75136 2.95200 3.14888 3.58888 3.77233 3.80147 4.08029 4.24385 4.29641 4.31248 4.32377 4.34866 4.39469 4.43087 4.47623 4.55045 4.60037 4.63868 4.66166 4.67674 4.70469 4.75085 4.82636 4.93998 5.00196 5.04211 5.12235 5.19205 5.23143 5.34363 5.35525 5.59505 5.66128 5.81039 5.91688 6.46948 6.55269 6.70658 7.06883 7.47520 7.96155 8.67246 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.006760 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.128466 B = 4141.122313 C = 5336.150433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.059 3.941 4 C 0.104 3.896 5 N -0.483 5.483 6 C -0.319 4.319 7 H 0.083 0.917 8 C 0.052 3.948 9 N -0.892 5.892 10 Si 0.892 3.108 11 H -0.291 1.291 12 H -0.259 1.259 13 H -0.276 1.276 14 C 0.516 3.484 15 O -0.594 6.594 16 C -0.093 4.093 17 H 0.058 0.942 18 C -0.105 4.105 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.085 4.085 22 H 0.125 0.875 23 C 0.474 3.526 24 O -0.542 6.542 25 O -0.359 6.359 26 C 0.025 3.975 27 C -0.079 4.079 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.277 0.723 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.136 0.864 45 H 0.076 0.924 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 -7.784 3.585 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.019 4.019 4 C -0.019 4.019 5 N -0.205 5.205 6 C -0.447 4.447 7 H 0.101 0.899 8 C -0.152 4.152 9 N -0.529 5.529 10 Si 0.721 3.279 11 H -0.219 1.219 12 H -0.184 1.184 13 H -0.202 1.202 14 C 0.306 3.694 15 O -0.479 6.479 16 C -0.114 4.114 17 H 0.076 0.924 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.133 4.133 21 C -0.104 4.104 22 H 0.142 0.858 23 C 0.319 3.681 24 O -0.432 6.432 25 O -0.275 6.275 26 C -0.067 4.067 27 C -0.117 4.117 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.154 0.846 45 H 0.094 0.906 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.590 -8.424 3.847 14.068 hybrid contribution 1.410 -0.090 0.135 1.420 sum -9.179 -8.514 3.981 13.138 Atomic orbital electron populations 1.22826 0.80616 1.03061 1.00299 1.88050 1.20407 1.27949 1.95326 1.22855 0.93577 0.84941 1.00526 1.21665 0.93548 0.98991 0.87707 1.43620 1.61924 1.03931 1.11035 1.18640 1.01863 1.18717 1.05501 0.89944 1.25827 0.97832 0.96201 0.95348 1.69673 1.26328 1.43125 1.13799 0.86876 0.81096 0.80446 0.79514 1.21853 1.18440 1.20163 1.20282 0.76802 0.82669 0.89604 1.90422 1.55454 1.63122 1.38865 1.21344 1.00118 0.94581 0.95365 0.92446 1.21493 0.93197 1.03386 0.96215 1.21514 0.97010 0.94337 1.02010 1.21484 0.96933 0.97236 0.97687 1.21340 0.98147 0.86184 1.04688 0.85782 1.24091 0.80830 0.91362 0.71810 1.90595 1.31630 1.72174 1.48844 1.86517 1.40320 1.24167 1.76536 1.23575 1.05097 0.75563 1.02514 1.21157 0.96052 0.93567 1.00886 0.93974 0.89371 0.93133 0.90854 0.93561 0.91899 0.88485 0.91271 0.89941 0.91535 0.91970 0.89645 0.89227 0.90875 0.91702 0.92533 0.84609 0.90573 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -13.78 8.81 -148.74 -1.31 -15.09 16 3 C 0.06 1.89 6.28 71.98 0.45 2.34 16 4 C 0.10 3.99 5.86 86.38 0.51 4.49 16 5 N -0.48 -21.74 2.04 -635.53 -1.30 -23.03 16 6 C -0.32 -15.49 7.26 84.04 0.61 -14.88 16 7 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 8 C 0.05 2.65 4.37 84.93 0.37 3.02 16 9 N -0.89 -47.17 13.96 21.66 0.30 -46.87 16 10 Si 0.89 42.82 24.36 68.60 1.67 44.49 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.26 -12.89 4.50 99.48 0.45 -12.44 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 C 0.52 23.76 2.38 87.66 0.21 23.97 16 15 O -0.59 -29.16 12.73 -2.84 -0.04 -29.19 16 16 C -0.09 -4.05 1.28 -11.54 -0.01 -4.07 16 17 H 0.06 2.70 2.55 -2.39 -0.01 2.70 16 18 C -0.11 -4.06 5.14 30.60 0.16 -3.90 16 19 C -0.11 -3.61 5.70 30.60 0.17 -3.44 16 20 C -0.10 -2.84 5.14 30.59 0.16 -2.68 16 21 C -0.08 -3.07 2.33 -11.54 -0.03 -3.10 16 22 H 0.12 5.13 5.48 -2.38 -0.01 5.12 16 23 C 0.47 16.51 7.26 71.24 0.52 17.03 16 24 O -0.54 -21.30 15.73 21.96 0.35 -20.95 16 25 O -0.36 -10.37 10.47 -51.41 -0.54 -10.90 16 26 C 0.03 0.52 10.56 113.37 1.20 1.72 16 27 C -0.08 -3.19 3.66 30.59 0.11 -3.08 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 2.54 7.35 -2.39 -0.02 2.52 16 34 H 0.10 3.40 8.04 -2.39 -0.02 3.38 16 35 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.08 3.62 5.69 -2.39 -0.01 3.60 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 2.27 6.24 -2.39 -0.01 2.26 16 39 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.09 2.28 8.11 -2.39 -0.02 2.26 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 43 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 44 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.08 2.87 8.10 -2.38 -0.02 2.85 16 46 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 Total: -1.00 -63.66 350.58 5.52 -58.14 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.71 Total: 24.03 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 5.67 Total: 19.38 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -0.99 Total: -69.90 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -1.54 Total: -76.14 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.67 Total: 44.49 kcal Total: -63.66 5.52 -58.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.052 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds