Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 C 1.52999 * 109.46666 * 240.00209 * 2 1 3 5 5 O 1.45199 * 109.47076 * 120.00058 * 2 1 3 6 6 C 1.34639 * 116.99961 * 60.00228 * 5 2 1 7 7 O 1.21515 * 119.99765 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99965 * 179.97438 * 6 5 2 9 9 N 1.40094 * 120.00351 * 359.97438 * 8 6 5 10 10 C 1.46768 * 124.35250 * 104.99636 * 9 8 6 11 11 C 1.54480 * 105.55098 * 163.02952 * 10 9 8 12 12 H 1.08997 * 110.96887 * 267.25550 * 11 10 9 13 13 C 1.50698 * 110.96920 * 143.49338 * 11 10 9 14 14 O 1.21294 * 120.00198 * 359.97438 * 13 11 10 15 15 N 1.34781 * 119.99776 * 179.97438 * 13 11 10 16 16 C 1.37095 * 119.99553 * 179.97438 * 15 13 11 17 17 H 1.07996 * 120.00345 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99716 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46733 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47253 * 119.99771 * 20 18 16 23 23 H 1.48506 * 109.46738 * 240.00131 * 20 18 16 24 24 C 1.54633 * 101.76342 * 25.37218 * 11 10 9 25 25 C 1.34570 * 124.43362 * 284.92794 * 9 8 6 26 26 O 1.21271 * 124.91608 * 0.44908 * 25 9 8 27 27 H 1.09002 * 109.46651 * 299.99912 * 1 2 3 28 28 H 1.08997 * 109.46950 * 59.99748 * 1 2 3 29 29 H 1.08992 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47064 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47456 * 300.00474 * 3 2 1 32 32 H 1.08994 * 109.47167 * 60.00089 * 3 2 1 33 33 H 1.09004 * 109.47075 * 299.99552 * 4 2 1 34 34 H 1.08997 * 109.47401 * 60.00319 * 4 2 1 35 35 H 1.09006 * 109.47146 * 180.02562 * 4 2 1 36 36 H 0.97009 * 119.99979 * 179.97438 * 8 6 5 37 37 H 1.09002 * 110.24468 * 43.98456 * 10 9 8 38 38 H 1.09002 * 110.24463 * 282.07214 * 10 9 8 39 39 H 0.96997 * 120.00244 * 0.02562 * 15 13 11 40 40 H 0.96998 * 119.99969 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.48603 * 93.88148 * 24 11 10 42 42 H 1.08998 * 110.48250 * 216.39069 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0681 -2.6657 2.4165 9 7 2.8771 -2.0467 3.3782 10 6 2.4074 -1.6088 4.6980 11 6 3.6833 -1.4025 5.5442 12 1 3.9323 -2.3058 6.1011 13 6 3.5306 -0.2245 6.4716 14 8 2.4995 0.4143 6.4761 15 7 4.5399 0.1192 7.2961 16 6 4.4012 1.1911 8.1395 17 1 3.4831 1.7599 8.1434 18 6 5.4419 1.5458 8.9892 19 7 6.5592 0.8540 8.9840 20 14 5.2527 3.0059 10.1388 21 1 3.9102 3.6124 9.9518 22 1 5.3996 2.5513 11.5448 23 1 6.2983 4.0153 9.8330 24 6 4.7416 -1.1151 4.4540 25 6 4.1853 -1.7776 3.2130 26 8 4.8246 -2.0282 2.2134 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.8072 -3.5935 2.5268 37 1 1.7766 -2.3757 5.1474 38 1 1.8571 -0.6719 4.6107 39 1 5.3646 -0.3914 7.2923 40 1 7.2855 1.1014 9.5774 41 1 4.8472 -0.0414 4.2985 42 1 5.7001 -1.5562 4.7273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494140955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -119.003982 kcal Electronic energy + Delta-G solvation = -26967.270581 eV Core-core repulsion = 22948.964155 eV Total energy + Delta-G solvation = -4018.306426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10328 -40.24949 -38.29033 -37.32273 -36.28088 -34.75195 -34.08719 -33.71798 -31.42396 -29.69921 -27.60879 -27.51568 -27.50335 -25.34053 -23.40415 -22.63582 -21.13442 -19.53567 -19.19032 -18.19140 -18.05403 -17.86764 -16.69729 -16.38212 -16.27750 -15.35247 -15.25439 -14.93590 -14.44597 -14.39564 -14.22206 -14.09289 -13.78302 -13.57632 -13.17077 -12.66464 -12.59020 -12.50045 -12.39831 -12.05351 -12.01819 -11.70993 -11.68569 -11.52378 -11.36619 -11.19822 -11.09765 -10.53473 -10.46576 -10.43611 -10.34691 -10.26152 -9.67718 -9.63362 -8.95691 -8.59402 -8.13579 -6.55907 -3.97391 1.47421 2.48953 2.63000 2.67050 3.07099 3.20750 3.26956 3.63048 4.03164 4.35531 4.43167 4.54868 4.59504 4.64443 4.77108 4.77797 5.08993 5.17477 5.31704 5.35395 5.40408 5.46656 5.59127 5.61509 5.68313 5.71697 5.73744 5.89072 5.93447 6.10629 6.12387 6.14380 6.19413 6.27302 6.60213 6.74150 7.10394 7.42869 7.89280 7.94356 8.40880 8.42663 9.01769 9.35676 9.84365 10.60915 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.003179 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.943214 B = 8805.940521 C = 9260.918987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.133 3.867 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.346 6.346 6 C 0.667 3.333 7 O -0.561 6.561 8 N -0.483 5.483 9 N -0.425 5.425 10 C 0.123 3.877 11 C -0.107 4.107 12 H 0.108 0.892 13 C 0.445 3.555 14 O -0.590 6.590 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.930 3.070 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.280 1.280 24 C -0.132 4.132 25 C 0.530 3.470 26 O -0.519 6.519 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.438 0.562 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.118 0.882 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 -4.633 -12.772 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.097 3.903 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.260 6.260 6 C 0.421 3.579 7 O -0.448 6.448 8 N -0.240 5.240 9 N -0.255 5.255 10 C 0.001 3.999 11 C -0.130 4.130 12 H 0.126 0.874 13 C 0.230 3.770 14 O -0.476 6.476 15 N -0.183 5.183 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.176 4.176 19 N -0.535 5.535 20 Si 0.757 3.243 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.174 4.174 25 C 0.318 3.682 26 O -0.393 6.393 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.285 0.715 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.228 0.772 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.781 -4.260 -13.637 15.814 hybrid contribution 0.324 -0.101 0.700 0.778 sum -6.457 -4.361 -12.937 15.102 Atomic orbital electron populations 1.22522 0.93925 1.04855 1.02738 1.22151 0.94333 0.91843 0.81995 1.21858 1.02554 0.92261 1.03206 1.22510 1.01946 1.03144 0.96390 1.86421 1.70710 1.22728 1.46111 1.18163 0.77509 0.81216 0.80986 1.90970 1.41372 1.70728 1.41718 1.43593 1.51308 1.12396 1.16726 1.47785 1.06028 1.60165 1.11535 1.22265 0.96866 1.02190 0.78581 1.22084 0.94326 1.00891 0.95732 0.87350 1.19208 0.85721 0.87201 0.84872 1.90548 1.29277 1.55988 1.71752 1.41834 1.14821 1.28239 1.33420 1.19788 1.02303 1.06392 1.14889 0.87599 1.25304 0.94872 0.99088 0.98374 1.69608 1.04878 1.40011 1.38976 0.85789 0.78689 0.80454 0.79373 1.19109 1.20647 1.20625 1.22295 0.99889 1.03856 0.91330 1.21445 0.80130 0.77176 0.89416 1.90721 1.62490 1.53610 1.32456 0.91880 0.91035 0.89596 0.91305 0.90120 0.91157 0.89633 0.91095 0.91909 0.71523 0.89681 0.88154 0.77161 0.91645 0.86387 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.37 37.16 0.31 -1.72 16 2 C 0.13 1.65 1.13 -90.62 -0.10 1.55 16 3 C -0.14 -1.47 8.85 37.15 0.33 -1.14 16 4 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 5 O -0.35 -5.30 9.39 -40.32 -0.38 -5.68 16 6 C 0.67 10.00 8.05 54.05 0.44 10.44 16 7 O -0.56 -8.71 12.72 -19.28 -0.25 -8.96 16 8 N -0.48 -6.39 6.18 27.59 0.17 -6.22 16 9 N -0.43 -5.95 3.32 -59.16 -0.20 -6.15 16 10 C 0.12 1.68 6.96 -3.12 -0.02 1.66 16 11 C -0.11 -1.56 3.54 -90.14 -0.32 -1.88 16 12 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.45 9.06 7.01 -10.98 -0.08 8.99 16 14 O -0.59 -14.13 15.08 5.55 0.08 -14.05 16 15 N -0.55 -12.35 5.29 -10.96 -0.06 -12.40 16 16 C -0.30 -7.78 9.68 -14.93 -0.14 -7.92 16 17 H 0.11 2.86 7.16 -52.49 -0.38 2.48 16 18 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 19 N -0.89 -22.66 13.05 55.50 0.72 -21.93 16 20 Si 0.93 19.73 29.55 -169.99 -5.02 14.71 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.13 -1.85 6.41 -26.74 -0.17 -2.02 16 25 C 0.53 8.28 8.00 -10.79 -0.09 8.20 16 26 O -0.52 -9.73 17.95 5.56 0.10 -9.63 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.14 5.88 -51.93 -0.31 0.84 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.44 4.50 8.93 -182.59 -1.63 2.87 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.61 6.96 -51.93 -0.36 1.25 16 39 H 0.39 8.44 7.90 -40.82 -0.32 8.12 16 40 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 41 H 0.12 1.78 7.89 -51.93 -0.41 1.37 16 42 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -31.89 356.06 -6.16 -38.05 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.07 Total: 12.01 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 0.37 Total: 14.88 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.64 Total: -46.70 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.44 Total: -38.31 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.89 -6.16 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494140955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.950 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds