Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 C 1.52999 * 109.46666 * 240.00209 * 2 1 3 5 5 O 1.45199 * 109.47076 * 120.00058 * 2 1 3 6 6 C 1.34639 * 116.99961 * 60.00228 * 5 2 1 7 7 O 1.21515 * 119.99765 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99965 * 179.97438 * 6 5 2 9 9 N 1.40094 * 120.00351 * 359.97438 * 8 6 5 10 10 C 1.46768 * 124.35250 * 104.99636 * 9 8 6 11 11 C 1.54480 * 105.55098 * 163.02952 * 10 9 8 12 12 H 1.08997 * 110.96887 * 267.25550 * 11 10 9 13 13 C 1.50698 * 110.96920 * 143.49338 * 11 10 9 14 14 O 1.21294 * 120.00198 * 359.97438 * 13 11 10 15 15 N 1.34781 * 119.99776 * 179.97438 * 13 11 10 16 16 C 1.37095 * 119.99553 * 179.97438 * 15 13 11 17 17 H 1.07996 * 120.00345 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99716 * 180.02562 * 16 15 13 19 19 N 1.31412 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46733 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47253 * 119.99771 * 20 18 16 23 23 H 1.48506 * 109.46738 * 240.00131 * 20 18 16 24 24 C 1.54633 * 101.76342 * 25.37218 * 11 10 9 25 25 C 1.34570 * 124.43362 * 284.92794 * 9 8 6 26 26 O 1.21271 * 124.91608 * 0.44908 * 25 9 8 27 27 H 1.09002 * 109.46651 * 299.99912 * 1 2 3 28 28 H 1.08997 * 109.46950 * 59.99748 * 1 2 3 29 29 H 1.08992 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47064 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47456 * 300.00474 * 3 2 1 32 32 H 1.08994 * 109.47167 * 60.00089 * 3 2 1 33 33 H 1.09004 * 109.47075 * 299.99552 * 4 2 1 34 34 H 1.08997 * 109.47401 * 60.00319 * 4 2 1 35 35 H 1.09006 * 109.47146 * 180.02562 * 4 2 1 36 36 H 0.97009 * 119.99979 * 179.97438 * 8 6 5 37 37 H 1.09002 * 110.24468 * 43.98456 * 10 9 8 38 38 H 1.09002 * 110.24463 * 282.07214 * 10 9 8 39 39 H 0.96997 * 120.00244 * 0.02562 * 15 13 11 40 40 H 0.96998 * 119.99969 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.48603 * 93.88148 * 24 11 10 42 42 H 1.08998 * 110.48250 * 216.39069 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0681 -2.6657 2.4165 9 7 2.8771 -2.0467 3.3782 10 6 2.4074 -1.6088 4.6980 11 6 3.6833 -1.4025 5.5442 12 1 3.9323 -2.3058 6.1011 13 6 3.5306 -0.2245 6.4716 14 8 2.4995 0.4143 6.4761 15 7 4.5399 0.1192 7.2961 16 6 4.4012 1.1911 8.1395 17 1 3.4831 1.7599 8.1434 18 6 5.4419 1.5458 8.9892 19 7 6.5592 0.8540 8.9840 20 14 5.2527 3.0059 10.1388 21 1 3.9102 3.6124 9.9518 22 1 5.3996 2.5513 11.5448 23 1 6.2983 4.0153 9.8330 24 6 4.7416 -1.1151 4.4540 25 6 4.1853 -1.7776 3.2130 26 8 4.8246 -2.0282 2.2134 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.8072 -3.5935 2.5268 37 1 1.7766 -2.3757 5.1474 38 1 1.8571 -0.6719 4.6107 39 1 5.3646 -0.3914 7.2923 40 1 7.2855 1.1014 9.5774 41 1 4.8472 -0.0414 4.2985 42 1 5.7001 -1.5562 4.7273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494140955.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -142.333598 kcal Electronic energy + Delta-G solvation = -26968.282229 eV Core-core repulsion = 22948.964155 eV Total energy + Delta-G solvation = -4019.318074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.25965 -41.47717 -39.91223 -38.42358 -37.58046 -36.10395 -35.75001 -34.78370 -33.24412 -30.95372 -28.83908 -28.41317 -28.37165 -27.10592 -24.54870 -24.02476 -22.26284 -20.84588 -20.55146 -19.83713 -19.29890 -19.15132 -18.06417 -17.48267 -17.41207 -16.85752 -16.42616 -16.36855 -15.94651 -15.71392 -15.56787 -15.41219 -15.07096 -14.62231 -14.56117 -14.08490 -13.96285 -13.46477 -13.43354 -13.28604 -12.98434 -12.95165 -12.92218 -12.68381 -12.56469 -12.52020 -12.38947 -12.31098 -12.07222 -11.70582 -11.49473 -11.48915 -11.36164 -10.85810 -10.32119 -10.13281 -9.98646 -8.44155 -5.91886 0.37338 1.26965 1.39468 1.46438 1.47825 1.59139 1.60788 2.00253 2.32124 2.96139 3.18457 3.26841 3.39178 3.57394 3.66979 3.73370 3.87727 3.93172 4.04915 4.41316 4.50345 4.52808 4.56909 4.61347 4.70740 4.71336 4.79544 4.80877 4.82190 4.97766 5.02157 5.21068 5.22549 5.25652 5.46841 5.55214 5.62169 5.92570 6.02438 6.59950 6.76760 7.14686 7.27613 7.57384 8.10524 8.72538 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.003179 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.943214 B = 8805.940521 C = 9260.918987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 C -0.138 4.138 4 C -0.176 4.176 5 O -0.367 6.367 6 C 0.660 3.340 7 O -0.570 6.570 8 N -0.476 5.476 9 N -0.418 5.418 10 C 0.128 3.872 11 C -0.093 4.093 12 H 0.147 0.853 13 C 0.452 3.548 14 O -0.626 6.626 15 N -0.559 5.559 16 C -0.331 4.331 17 H 0.083 0.917 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 0.987 3.013 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.531 3.469 26 O -0.552 6.552 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.451 0.549 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.278 0.722 41 H 0.106 0.894 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 -4.929 -13.004 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.083 3.917 3 C -0.195 4.195 4 C -0.233 4.233 5 O -0.281 6.281 6 C 0.414 3.586 7 O -0.457 6.457 8 N -0.235 5.235 9 N -0.246 5.246 10 C 0.007 3.993 11 C -0.115 4.115 12 H 0.165 0.835 13 C 0.239 3.761 14 O -0.514 6.514 15 N -0.194 5.194 16 C -0.461 4.461 17 H 0.101 0.899 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.811 3.189 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.166 4.166 25 C 0.320 3.680 26 O -0.428 6.428 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.301 0.699 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.937 -4.582 -13.860 16.162 hybrid contribution 0.291 -0.003 0.692 0.751 sum -6.646 -4.584 -13.168 15.446 Atomic orbital electron populations 1.22462 0.92973 1.04017 1.03888 1.22550 0.95243 0.92558 0.81371 1.21895 1.01971 0.91222 1.04402 1.22454 1.01191 1.02340 0.97356 1.86416 1.71147 1.22932 1.47589 1.18345 0.77597 0.81329 0.81293 1.90964 1.41799 1.70926 1.42059 1.43633 1.50808 1.12909 1.16199 1.47709 1.05660 1.59649 1.11596 1.22231 0.96528 1.02268 0.78314 1.21977 0.95118 0.99483 0.94938 0.83498 1.20076 0.84299 0.87619 0.84120 1.90536 1.30670 1.57547 1.72629 1.41853 1.15635 1.28062 1.33898 1.19708 1.01960 1.07810 1.16630 0.89942 1.25951 0.94482 1.01120 0.99271 1.69656 1.05230 1.40974 1.39587 0.84950 0.78269 0.77791 0.77859 1.19686 1.19863 1.20012 1.22271 1.00799 1.03224 0.90326 1.21621 0.80424 0.76708 0.89235 1.90709 1.63372 1.55044 1.33696 0.92244 0.88350 0.91328 0.92218 0.87041 0.91816 0.91509 0.88229 0.92953 0.69885 0.86388 0.90601 0.76530 0.91290 0.87554 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 8.37 71.98 0.60 -3.11 16 2 C 0.12 2.84 1.13 -10.79 -0.01 2.83 16 3 C -0.14 -2.71 8.85 71.98 0.64 -2.07 16 4 C -0.18 -3.95 8.37 71.98 0.60 -3.34 16 5 O -0.37 -11.20 9.39 -55.48 -0.52 -11.72 16 6 C 0.66 19.56 8.05 129.79 1.04 20.60 16 7 O -0.57 -17.56 12.72 19.79 0.25 -17.31 16 8 N -0.48 -12.08 6.18 -297.02 -1.84 -13.91 16 9 N -0.42 -11.09 3.32 -459.60 -1.53 -12.62 16 10 C 0.13 3.27 6.96 86.83 0.60 3.88 16 11 C -0.09 -2.50 3.54 -10.48 -0.04 -2.54 16 12 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 13 C 0.45 18.15 7.01 87.66 0.61 18.76 16 14 O -0.63 -30.22 15.08 -3.07 -0.05 -30.26 16 15 N -0.56 -25.04 5.29 -306.98 -1.62 -26.67 16 16 C -0.33 -17.12 9.68 84.04 0.81 -16.31 16 17 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 18 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 19 N -0.91 -45.78 13.05 21.67 0.28 -45.50 16 20 Si 0.99 40.25 29.55 68.60 2.03 42.28 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 C -0.12 -3.30 6.41 30.59 0.20 -3.10 16 25 C 0.53 15.95 8.00 87.87 0.70 16.65 16 26 O -0.55 -20.33 17.95 -3.00 -0.05 -20.38 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.70 5.88 -2.39 -0.01 1.69 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.76 5.88 -2.39 -0.01 1.75 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.45 8.60 8.93 -213.31 -1.90 6.69 16 37 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.08 2.39 6.96 -2.39 -0.02 2.38 16 39 H 0.40 16.84 7.90 -92.71 -0.73 16.11 16 40 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 41 H 0.11 3.14 7.89 -2.39 -0.02 3.12 16 42 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -69.68 356.06 1.63 -68.06 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -1.57 Total: 35.70 kcal Atomic # 6 Polarization: 26.10 SS G_CDS: 6.24 Total: 32.33 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.70 Total: -98.70 kcal Atomic # 8 Polarization: -79.30 SS G_CDS: -0.37 Total: -79.67 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -69.68 1.63 -68.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494140955.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.278 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds