Wall clock time and date at job start Fri Apr 10 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48505 * 109.47025 * 274.70502 * 3 2 1 5 5 H 1.48496 * 109.47433 * 34.70466 * 3 2 1 6 6 H 1.48496 * 109.46927 * 154.70791 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99830 * 197.13358 * 7 2 1 9 9 N 1.36932 * 120.00068 * 17.40196 * 7 2 1 10 10 C 1.47088 * 120.88239 * 26.48381 * 9 7 2 11 11 C 1.53692 * 108.27759 * 128.75122 * 10 9 7 12 12 N 1.46899 * 109.25980 * 54.08291 * 11 10 9 13 13 C 1.46901 * 111.00119 * 172.60836 * 12 11 10 14 14 C 1.50704 * 109.46949 * 314.30273 * 13 12 11 15 15 C 1.35364 * 126.97749 * 94.63623 * 14 13 12 16 16 N 1.33777 * 106.54087 * 180.02562 * 15 14 13 17 17 N 1.28607 * 109.05661 * 359.97438 * 16 15 14 18 18 N 1.28726 * 110.23576 * 359.71938 * 17 16 15 19 19 C 1.40245 * 125.94216 * 180.30760 * 18 17 16 20 20 C 1.38824 * 120.06467 * 222.72042 * 19 18 17 21 21 C 1.38133 * 119.92957 * 179.70061 * 20 19 18 22 22 C 1.38275 * 120.06702 * 0.59706 * 21 20 19 23 23 C 1.38276 * 120.13071 * 359.67992 * 22 21 20 24 24 C 1.38123 * 120.06476 * 0.02562 * 23 22 21 25 25 C 1.46897 * 111.26696 * 296.75589 * 12 11 10 26 26 C 1.47074 * 120.88525 * 206.75649 * 9 7 2 27 27 H 0.96999 * 119.99850 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.62788 * 248.52152 * 10 9 7 29 29 H 1.09003 * 109.62161 * 9.09850 * 10 9 7 30 30 H 1.09005 * 109.64612 * 294.07321 * 11 10 9 31 31 H 1.09003 * 109.44049 * 173.96173 * 11 10 9 32 32 H 1.08998 * 109.47289 * 74.29692 * 13 12 11 33 33 H 1.08994 * 109.47269 * 194.30555 * 13 12 11 34 34 H 1.08004 * 126.73160 * 359.97438 * 15 14 13 35 35 H 1.07996 * 120.03653 * 0.02562 * 20 19 18 36 36 H 1.08004 * 119.96124 * 180.29924 * 21 20 19 37 37 H 1.07997 * 119.93632 * 179.70324 * 22 21 20 38 38 H 1.07999 * 119.96691 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.03506 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.49633 * 303.14389 * 25 12 11 41 41 H 1.09001 * 109.51249 * 183.07529 * 25 12 11 42 42 H 1.09001 * 109.62910 * 350.89798 * 26 9 7 43 43 H 1.08996 * 109.63373 * 111.28640 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3983 2.1038 -1.3954 5 1 1.5010 2.6219 0.7971 6 1 3.5940 1.4134 0.5981 7 6 2.0103 -1.2022 -0.0005 8 1 3.0543 -1.2231 0.2750 9 7 1.3726 -2.3607 -0.3557 10 6 0.2107 -2.3371 -1.2574 11 6 0.4591 -3.3456 -2.3903 12 7 0.7679 -4.6594 -1.8103 13 6 0.8399 -5.6915 -2.8532 14 6 -0.3339 -5.5449 -3.7869 15 6 -0.3629 -4.8669 -4.9582 16 7 -1.6009 -5.0031 -5.4465 17 7 -2.2963 -5.7182 -4.6346 18 7 -1.5784 -6.0725 -3.6266 19 6 -2.0053 -6.8618 -2.5488 20 6 -1.6449 -6.5217 -1.2520 21 6 -2.0720 -7.2975 -0.1920 22 6 -2.8475 -8.4189 -0.4225 23 6 -3.2033 -8.7634 -1.7136 24 6 -2.7842 -7.9880 -2.7771 25 6 2.0087 -4.6170 -1.0251 26 6 1.8275 -3.6612 0.1589 27 1 -0.4850 0.8400 0.0004 28 1 -0.6869 -2.6157 -0.7053 29 1 0.0916 -1.3373 -1.6749 30 1 1.2978 -3.0113 -3.0011 31 1 -0.4343 -3.4224 -3.0100 32 1 1.7671 -5.5767 -3.4146 33 1 0.8150 -6.6780 -2.3905 34 1 0.4531 -4.3220 -5.4095 35 1 -1.0355 -5.6484 -1.0717 36 1 -1.7960 -7.0306 0.8175 37 1 -3.1763 -9.0267 0.4074 38 1 -3.8094 -9.6395 -1.8906 39 1 -3.0627 -8.2573 -3.7852 40 1 2.8258 -4.2651 -1.6548 41 1 2.2393 -5.6158 -0.6544 42 1 2.7778 -3.5374 0.6782 43 1 1.0840 -4.0631 0.8471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588961854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:54 Heat of formation + Delta-G solvation = 175.431651 kcal Electronic energy + Delta-G solvation = -26464.440703 eV Core-core repulsion = 22934.336730 eV Total energy + Delta-G solvation = -3530.103974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.42034 -39.33540 -38.29022 -34.94078 -34.47074 -32.21791 -31.17420 -30.58665 -29.99912 -29.92191 -27.47388 -24.98758 -24.05486 -23.25533 -22.72333 -22.45793 -21.76776 -20.49782 -19.18463 -18.14873 -16.98939 -16.54752 -16.40462 -15.28954 -15.13855 -15.08282 -14.68830 -14.44096 -14.37025 -13.97339 -13.60964 -13.51916 -13.24480 -13.13035 -13.09114 -12.84049 -12.11608 -11.77021 -11.68424 -11.52208 -11.36885 -11.12749 -10.96591 -10.80215 -10.62726 -10.51660 -10.39679 -10.14574 -9.85829 -9.69201 -9.21035 -9.13334 -8.86124 -8.55951 -8.04142 -6.73811 -5.82692 -3.24626 0.65609 1.13711 1.76139 2.30180 2.58376 3.35559 3.42811 3.44136 3.47430 4.20813 4.32698 4.46678 4.59330 4.69865 4.78113 4.90575 5.00398 5.12832 5.19178 5.33203 5.33535 5.38210 5.48604 5.50621 5.67932 5.77588 5.82476 5.89786 6.01538 6.08478 6.11219 6.12361 6.22288 6.24582 6.33552 6.43586 6.51073 6.58785 6.80923 6.91157 7.12686 7.32547 7.50310 7.60902 7.76103 8.38260 8.50738 9.15852 9.79220 10.36805 11.26027 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.003987 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.825167 B = 7020.816701 C = 7693.742385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.594 5.594 10 C 0.180 3.820 11 C 0.031 3.969 12 N -0.529 5.529 13 C 0.119 3.881 14 C 0.004 3.996 15 C -0.043 4.043 16 N -0.265 5.265 17 N -0.083 5.083 18 N -0.234 5.234 19 C 0.110 3.890 20 C -0.097 4.097 21 C -0.105 4.105 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.097 4.097 25 C 0.044 3.956 26 C 0.149 3.851 27 H 0.254 0.746 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.170 0.830 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -18.204 -3.148 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.098 4.098 12 N -0.255 5.255 13 C -0.011 4.011 14 C -0.126 4.126 15 C -0.200 4.200 16 N -0.131 5.131 17 N -0.061 5.061 18 N -0.023 5.023 19 C 0.020 3.980 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.117 4.117 25 C -0.085 4.085 26 C 0.022 3.978 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.207 0.793 35 H 0.187 0.813 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.470 -18.209 -3.537 18.871 hybrid contribution 1.982 1.166 -0.101 2.302 sum -1.487 -17.043 -3.637 17.490 Atomic orbital electron populations 1.70027 1.05246 1.25582 1.53766 1.25025 0.95275 0.98404 1.00815 0.86279 0.79140 0.83764 0.77622 1.21472 1.21739 1.20393 1.19195 0.92684 0.84819 1.41771 0.91551 1.44140 1.34522 1.01235 1.51822 1.20936 0.88870 0.96669 0.88095 1.23109 0.99062 0.88744 0.98921 1.62150 1.35239 1.06187 1.21953 1.20651 0.91469 0.97868 0.91103 1.22304 0.88541 1.02208 0.99576 1.23364 0.97298 1.04354 0.94973 1.75057 1.03460 1.12825 1.21727 1.78376 1.19444 1.13916 0.94379 1.44555 1.07993 1.33713 1.16032 1.17607 1.02671 0.92685 0.85050 1.21957 0.98705 1.01433 0.89634 1.21168 0.97434 0.94535 0.99263 1.21384 0.97181 0.96896 0.97055 1.21010 1.00444 0.99904 0.92064 1.21018 0.97263 0.92916 1.00530 1.22684 0.89191 0.99760 0.96899 1.20961 0.97993 0.86491 0.92324 0.93554 0.95764 0.89279 0.94991 0.92118 0.91931 0.89718 0.79285 0.81312 0.84552 0.85299 0.85037 0.85096 0.94737 0.91703 0.92393 0.95708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 11.17 55.49 0.62 -25.34 16 2 C 0.00 0.10 4.93 -17.43 -0.09 0.01 16 3 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.82 9.63 -15.06 -0.15 -6.97 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.34 3.03 -171.73 -0.52 -14.86 16 10 C 0.18 4.24 5.45 -3.36 -0.02 4.22 16 11 C 0.03 0.57 5.07 -3.47 -0.02 0.55 16 12 N -0.53 -8.29 2.77 -235.47 -0.65 -8.94 16 13 C 0.12 1.53 4.72 -4.97 -0.02 1.51 16 14 C 0.00 0.06 4.75 -81.71 -0.39 -0.33 16 15 C -0.04 -0.63 10.73 -17.73 -0.19 -0.82 16 16 N -0.27 -4.53 12.40 30.24 0.37 -4.16 16 17 N -0.08 -1.42 12.96 60.35 0.78 -0.64 16 18 N -0.23 -3.57 3.47 -6.77 -0.02 -3.60 16 19 C 0.11 1.48 6.10 -83.57 -0.51 0.97 16 20 C -0.10 -1.26 8.63 -39.40 -0.34 -1.60 16 21 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 22 C -0.11 -0.92 10.04 -39.55 -0.40 -1.32 16 23 C -0.12 -1.02 10.04 -39.61 -0.40 -1.42 16 24 C -0.10 -1.09 9.80 -39.41 -0.39 -1.48 16 25 C 0.04 0.68 5.58 -3.70 -0.02 0.66 16 26 C 0.15 2.91 6.69 -3.60 -0.02 2.88 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.15 5.74 -51.93 -0.30 0.85 16 32 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.08 0.99 7.59 -51.93 -0.39 0.60 16 34 H 0.19 2.30 8.06 -52.48 -0.42 1.87 16 35 H 0.17 2.54 5.43 -52.49 -0.29 2.25 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 42 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -30.95 346.98 -8.47 -39.42 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.90 Total: 1.11 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.34 Total: -4.63 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.58 Total: -57.53 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.95 -8.47 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588961854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.847 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds