Wall clock time and date at job start Fri Apr 10 2020 18:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48505 * 109.47025 * 274.70502 * 3 2 1 5 5 H 1.48496 * 109.47433 * 34.70466 * 3 2 1 6 6 H 1.48496 * 109.46927 * 154.70791 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99830 * 197.13358 * 7 2 1 9 9 N 1.36932 * 120.00068 * 17.40196 * 7 2 1 10 10 C 1.47088 * 120.88239 * 26.48381 * 9 7 2 11 11 C 1.53692 * 108.27759 * 128.75122 * 10 9 7 12 12 N 1.46899 * 109.25980 * 54.08291 * 11 10 9 13 13 C 1.46901 * 111.00119 * 172.60836 * 12 11 10 14 14 C 1.50704 * 109.46949 * 314.30273 * 13 12 11 15 15 C 1.35364 * 126.97749 * 94.63623 * 14 13 12 16 16 N 1.33777 * 106.54087 * 180.02562 * 15 14 13 17 17 N 1.28607 * 109.05661 * 359.97438 * 16 15 14 18 18 N 1.28726 * 110.23576 * 359.71938 * 17 16 15 19 19 C 1.40245 * 125.94216 * 180.30760 * 18 17 16 20 20 C 1.38824 * 120.06467 * 222.72042 * 19 18 17 21 21 C 1.38133 * 119.92957 * 179.70061 * 20 19 18 22 22 C 1.38275 * 120.06702 * 0.59706 * 21 20 19 23 23 C 1.38276 * 120.13071 * 359.67992 * 22 21 20 24 24 C 1.38123 * 120.06476 * 0.02562 * 23 22 21 25 25 C 1.46897 * 111.26696 * 296.75589 * 12 11 10 26 26 C 1.47074 * 120.88525 * 206.75649 * 9 7 2 27 27 H 0.96999 * 119.99850 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.62788 * 248.52152 * 10 9 7 29 29 H 1.09003 * 109.62161 * 9.09850 * 10 9 7 30 30 H 1.09005 * 109.64612 * 294.07321 * 11 10 9 31 31 H 1.09003 * 109.44049 * 173.96173 * 11 10 9 32 32 H 1.08998 * 109.47289 * 74.29692 * 13 12 11 33 33 H 1.08994 * 109.47269 * 194.30555 * 13 12 11 34 34 H 1.08004 * 126.73160 * 359.97438 * 15 14 13 35 35 H 1.07996 * 120.03653 * 0.02562 * 20 19 18 36 36 H 1.08004 * 119.96124 * 180.29924 * 21 20 19 37 37 H 1.07997 * 119.93632 * 179.70324 * 22 21 20 38 38 H 1.07999 * 119.96691 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.03506 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.49633 * 303.14389 * 25 12 11 41 41 H 1.09001 * 109.51249 * 183.07529 * 25 12 11 42 42 H 1.09001 * 109.62910 * 350.89798 * 26 9 7 43 43 H 1.08996 * 109.63373 * 111.28640 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3983 2.1038 -1.3954 5 1 1.5010 2.6219 0.7971 6 1 3.5940 1.4134 0.5981 7 6 2.0103 -1.2022 -0.0005 8 1 3.0543 -1.2231 0.2750 9 7 1.3726 -2.3607 -0.3557 10 6 0.2107 -2.3371 -1.2574 11 6 0.4591 -3.3456 -2.3903 12 7 0.7679 -4.6594 -1.8103 13 6 0.8399 -5.6915 -2.8532 14 6 -0.3339 -5.5449 -3.7869 15 6 -0.3629 -4.8669 -4.9582 16 7 -1.6009 -5.0031 -5.4465 17 7 -2.2963 -5.7182 -4.6346 18 7 -1.5784 -6.0725 -3.6266 19 6 -2.0053 -6.8618 -2.5488 20 6 -1.6449 -6.5217 -1.2520 21 6 -2.0720 -7.2975 -0.1920 22 6 -2.8475 -8.4189 -0.4225 23 6 -3.2033 -8.7634 -1.7136 24 6 -2.7842 -7.9880 -2.7771 25 6 2.0087 -4.6170 -1.0251 26 6 1.8275 -3.6612 0.1589 27 1 -0.4850 0.8400 0.0004 28 1 -0.6869 -2.6157 -0.7053 29 1 0.0916 -1.3373 -1.6749 30 1 1.2978 -3.0113 -3.0011 31 1 -0.4343 -3.4224 -3.0100 32 1 1.7671 -5.5767 -3.4146 33 1 0.8150 -6.6780 -2.3905 34 1 0.4531 -4.3220 -5.4095 35 1 -1.0355 -5.6484 -1.0717 36 1 -1.7960 -7.0306 0.8175 37 1 -3.1763 -9.0267 0.4074 38 1 -3.8094 -9.6395 -1.8906 39 1 -3.0627 -8.2573 -3.7852 40 1 2.8258 -4.2651 -1.6548 41 1 2.2393 -5.6158 -0.6544 42 1 2.7778 -3.5374 0.6782 43 1 1.0840 -4.0631 0.8471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588961854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:53 Heat of formation + Delta-G solvation = 156.916838 kcal Electronic energy + Delta-G solvation = -26465.243566 eV Core-core repulsion = 22934.336730 eV Total energy + Delta-G solvation = -3530.906836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.56138 -40.18955 -39.73899 -36.53329 -35.57585 -33.81677 -32.28636 -31.88450 -31.59512 -30.85015 -28.98855 -26.56891 -25.15154 -24.34414 -24.28117 -23.88102 -22.77404 -21.59901 -20.77002 -19.20799 -18.71523 -17.77993 -17.28227 -16.91862 -16.35504 -16.17480 -16.14890 -15.68384 -15.39558 -15.33859 -14.99510 -14.93466 -14.74742 -14.40060 -14.22355 -13.91931 -13.41290 -13.24314 -13.00722 -12.76109 -12.64619 -12.59369 -12.37279 -12.25483 -12.12413 -12.06180 -11.86666 -11.66530 -11.63736 -11.42497 -10.60187 -10.33186 -10.01327 -9.75282 -9.34019 -8.69903 -7.88617 -5.32936 -0.27215 0.33228 0.72027 1.28179 1.40400 1.45871 1.47752 1.56478 2.50231 2.66292 2.95409 3.23817 3.27873 3.60850 3.67415 3.83287 3.90497 3.95213 4.18112 4.20947 4.26472 4.34789 4.38522 4.42431 4.47336 4.60483 4.63095 4.65220 4.71318 4.78825 4.89700 5.02016 5.04341 5.07238 5.18889 5.35047 5.35210 5.37611 5.51747 5.61328 5.62187 5.63973 5.98117 6.02746 6.11012 6.36131 7.12107 7.33058 7.83830 8.37048 9.18090 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.003987 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.825167 B = 7020.816701 C = 7693.742385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.051 4.051 3 Si 0.965 3.035 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.260 4.260 8 H 0.072 0.928 9 N -0.611 5.611 10 C 0.191 3.809 11 C 0.056 3.944 12 N -0.531 5.531 13 C 0.127 3.873 14 C 0.000 4.000 15 C -0.048 4.048 16 N -0.294 5.294 17 N -0.111 5.111 18 N -0.229 5.229 19 C 0.080 3.920 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.106 4.106 24 C -0.105 4.105 25 C 0.056 3.944 26 C 0.143 3.857 27 H 0.248 0.752 28 H -0.009 1.009 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.212 0.788 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.131 0.869 40 H 0.036 0.964 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -20.924 -2.548 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.390 4.390 8 H 0.090 0.910 9 N -0.335 5.335 10 C 0.065 3.935 11 C -0.074 4.074 12 N -0.257 5.257 13 C -0.001 4.001 14 C -0.131 4.131 15 C -0.206 4.206 16 N -0.159 5.159 17 N -0.088 5.088 18 N -0.018 5.018 19 C -0.010 4.010 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.073 4.073 26 C 0.018 3.982 27 H 0.057 0.943 28 H 0.010 0.990 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.229 0.771 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.149 0.851 40 H 0.054 0.946 41 H 0.124 0.876 42 H 0.083 0.917 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.289 -20.975 -2.938 21.303 hybrid contribution 1.571 1.880 -0.175 2.456 sum -0.717 -19.095 -3.113 19.361 Atomic orbital electron populations 1.70197 1.06784 1.25709 1.55731 1.25768 0.95924 1.01503 1.01446 0.85285 0.78393 0.79773 0.77231 1.21590 1.22447 1.18852 1.19569 0.93070 0.85974 1.40389 0.91004 1.44397 1.34316 1.02399 1.52412 1.20595 0.87868 0.96036 0.89026 1.22606 0.98844 0.89371 0.96536 1.62029 1.35748 1.04923 1.23011 1.20706 0.91605 0.97440 0.90380 1.22598 0.88831 1.02019 0.99699 1.23821 0.97208 1.04303 0.95237 1.75005 1.04558 1.13667 1.22649 1.78304 1.20169 1.14963 0.95385 1.44759 1.08012 1.33182 1.15871 1.17927 1.04611 0.93738 0.84707 1.21812 0.99737 1.01530 0.90242 1.21400 0.97462 0.94822 0.99100 1.21788 0.95311 0.95993 0.98073 1.21422 0.99504 1.00098 0.91380 1.21193 0.97053 0.92734 1.01484 1.22542 0.88827 1.00686 0.95201 1.21162 0.97801 0.85144 0.94085 0.94288 0.99047 0.93157 0.94969 0.92657 0.89635 0.87662 0.77134 0.83638 0.83313 0.81783 0.81727 0.85142 0.94564 0.87594 0.91700 0.96290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.19 11.17 21.65 0.24 -55.95 16 2 C -0.05 -2.86 4.93 84.86 0.42 -2.44 16 3 Si 0.96 44.81 29.59 68.60 2.03 46.84 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.26 -14.01 9.63 84.03 0.81 -13.20 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 N -0.61 -29.88 3.03 -697.25 -2.11 -32.00 16 10 C 0.19 9.35 5.45 86.50 0.47 9.82 16 11 C 0.06 2.10 5.07 86.54 0.44 2.54 16 12 N -0.53 -15.86 2.77 -898.88 -2.49 -18.35 16 13 C 0.13 2.99 4.72 85.56 0.40 3.39 16 14 C 0.00 -0.01 4.75 41.23 0.20 0.19 16 15 C -0.05 -1.40 10.73 83.73 0.90 -0.50 16 16 N -0.29 -10.23 12.40 -58.24 -0.72 -10.95 16 17 N -0.11 -3.85 12.96 37.02 0.48 -3.37 16 18 N -0.23 -6.98 3.47 -175.34 -0.61 -7.59 16 19 C 0.08 2.08 6.10 38.08 0.23 2.32 16 20 C -0.11 -2.83 8.63 22.38 0.19 -2.64 16 21 C -0.11 -2.03 10.04 22.25 0.22 -1.81 16 22 C -0.09 -1.27 10.04 22.29 0.22 -1.04 16 23 C -0.11 -1.52 10.04 22.25 0.22 -1.29 16 24 C -0.10 -2.19 9.80 22.38 0.22 -1.97 16 25 C 0.06 1.59 5.58 86.39 0.48 2.08 16 26 C 0.14 5.44 6.69 86.35 0.58 6.02 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 29 H 0.05 2.83 6.12 -2.39 -0.01 2.82 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 2.14 5.74 -2.39 -0.01 2.13 16 32 H 0.09 1.68 8.08 -2.39 -0.02 1.67 16 33 H 0.11 2.11 7.59 -2.39 -0.02 2.10 16 34 H 0.21 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.15 4.35 5.43 -2.91 -0.02 4.34 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.11 2.23 8.11 -2.39 -0.02 2.21 16 42 H 0.06 2.34 7.95 -2.39 -0.02 2.32 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -70.91 346.98 3.84 -67.07 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.01 Total: 12.86 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 6.01 Total: 1.46 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.21 Total: -128.22 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -70.91 3.84 -67.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588961854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.986 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds