Wall clock time and date at job start Fri Apr 10 2020 18:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48495 * 109.47459 * 269.99862 * 3 2 1 5 5 H 1.48506 * 109.46941 * 30.00379 * 3 2 1 6 6 H 1.48506 * 109.46889 * 149.99894 * 3 2 1 7 7 C 1.37871 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.77916 * 56.76120 * 9 7 2 11 11 C 1.55156 * 110.71842 * 293.52106 * 9 7 2 12 12 C 1.55123 * 101.48498 * 205.96950 * 11 9 7 13 13 N 1.47423 * 104.72654 * 37.29727 * 12 11 9 14 14 C 1.34777 * 125.65109 * 155.81318 * 13 12 11 15 15 O 1.21283 * 119.99750 * 179.69290 * 14 13 12 16 16 C 1.50702 * 119.99928 * 359.97383 * 14 13 12 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 O 1.42898 * 109.47180 * 179.97438 * 17 16 14 19 19 C 1.42904 * 113.99948 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47095 * 180.02562 * 19 18 17 21 21 H 1.09004 * 110.32956 * 307.24793 * 20 19 18 22 22 C 1.54474 * 110.37191 * 185.00168 * 20 19 18 23 23 C 1.54510 * 104.06005 * 217.18878 * 22 20 19 24 24 C 1.54472 * 104.06265 * 359.97438 * 23 22 20 25 25 O 1.44413 * 104.80716 * 23.97869 * 24 23 22 26 26 C 1.47025 * 108.69835 * 335.55436 * 13 12 11 27 27 H 0.96999 * 119.99977 * 0.02562 * 1 2 3 28 28 H 0.96696 * 113.99872 * 303.23857 * 10 9 7 29 29 H 1.09005 * 111.00556 * 324.21086 * 11 9 7 30 30 H 1.08999 * 111.00040 * 88.02491 * 11 9 7 31 31 H 1.09004 * 110.49673 * 278.45187 * 12 11 9 32 32 H 1.09004 * 110.34018 * 156.06510 * 12 11 9 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 36 36 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 37 37 H 1.09007 * 109.47093 * 300.00015 * 19 18 17 38 38 H 1.08994 * 109.46971 * 59.99650 * 19 18 17 39 39 H 1.09000 * 110.50964 * 335.82878 * 22 20 19 40 40 H 1.09001 * 110.51615 * 98.54463 * 22 20 19 41 41 H 1.09005 * 110.50976 * 118.64423 * 23 22 20 42 42 H 1.09007 * 110.51088 * 241.35214 * 23 22 20 43 43 H 1.09004 * 110.37426 * 142.81361 * 24 23 22 44 44 H 1.09007 * 110.37294 * 265.03631 * 24 23 22 45 45 H 1.09004 * 109.88256 * 120.70346 * 26 13 12 46 46 H 1.08998 * 109.87939 * 241.71109 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 0.3637 -2.5713 -1.1196 11 6 0.4744 -2.6858 1.3285 12 6 0.3765 -4.2316 1.4147 13 7 1.6648 -4.7186 0.8890 14 6 2.2300 -5.9086 1.1735 15 8 3.2953 -6.2081 0.6772 16 6 1.5351 -6.8696 2.1035 17 6 2.3791 -8.1372 2.2506 18 8 1.7205 -9.0482 3.1328 19 6 2.4289 -10.2720 3.3394 20 6 1.6354 -11.1657 4.2946 21 1 1.3888 -10.6209 5.2060 22 6 2.4398 -12.4407 4.6313 23 6 1.3687 -13.5520 4.7041 24 6 0.0439 -12.8167 4.4034 25 8 0.4337 -11.6456 3.6536 26 6 2.2280 -3.6937 -0.0021 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2710 -1.8432 -1.1656 29 1 1.0363 -2.2791 2.1694 30 1 -0.5164 -2.2354 1.2690 31 1 -0.4464 -4.5967 0.8001 32 1 0.2461 -4.5458 2.4502 33 1 1.4080 -6.4024 3.0801 34 1 0.5585 -7.1286 1.6948 35 1 2.5062 -8.6044 1.2740 36 1 3.3558 -7.8781 2.6592 37 1 2.5563 -10.7836 2.3853 38 1 3.4069 -10.0574 3.7699 39 1 3.1610 -12.6565 3.8431 40 1 2.9434 -12.3322 5.5919 41 1 1.5606 -14.3172 3.9518 42 1 1.3428 -13.9928 5.7007 43 1 -0.6135 -13.4483 3.8060 44 1 -0.4491 -12.5281 5.3318 45 1 3.2027 -3.3756 0.3682 46 1 2.3275 -4.0939 -1.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592836754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:26 Heat of formation + Delta-G solvation = -183.016862 kcal Electronic energy + Delta-G solvation = -26001.644209 eV Core-core repulsion = 22084.102320 eV Total energy + Delta-G solvation = -3917.541889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84940 -39.54586 -37.85405 -37.13087 -34.34241 -32.57725 -32.17327 -32.08217 -30.47872 -29.51533 -28.27070 -25.84154 -25.16444 -23.35985 -22.31275 -22.07038 -21.30145 -19.69278 -18.66731 -17.46850 -17.21885 -16.76770 -16.40057 -16.26201 -15.72800 -15.63030 -15.11619 -14.94125 -14.71867 -14.17122 -14.08167 -13.93009 -13.70214 -12.99680 -12.94998 -12.45071 -12.19445 -12.12954 -12.00548 -11.74785 -11.60156 -11.52391 -11.43441 -11.36556 -11.27182 -11.18205 -10.99702 -10.90722 -10.61579 -10.49968 -10.13830 -10.05881 -9.69046 -9.51086 -9.34975 -8.68416 -8.23089 -8.03427 -6.31560 -4.38770 3.02738 3.12717 3.19253 3.26583 3.30400 3.54048 3.79432 4.19096 4.25268 4.43733 4.52227 4.77443 4.85238 4.87691 4.96630 4.99363 5.08788 5.11406 5.20134 5.27883 5.30864 5.39968 5.48057 5.50466 5.55511 5.58814 5.65382 5.75786 5.85454 5.88079 5.94487 6.02037 6.22155 6.44866 6.52621 6.67668 6.89061 6.95204 7.08089 7.28546 7.32213 7.71771 7.98052 8.08739 8.57379 8.64081 9.29682 9.43823 10.76328 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.038162 B = 0.002063 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.532757 B =13570.498520 C =13808.453742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.094 3.906 13 N -0.607 5.607 14 C 0.526 3.474 15 O -0.559 6.559 16 C -0.133 4.133 17 C 0.080 3.920 18 O -0.385 6.385 19 C 0.070 3.930 20 C 0.077 3.923 21 H 0.078 0.922 22 C -0.150 4.150 23 C -0.155 4.155 24 C 0.041 3.959 25 O -0.362 6.362 26 C 0.122 3.878 27 H 0.269 0.731 28 H 0.386 0.614 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -21.092 10.973 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.397 6.397 11 C -0.176 4.176 12 C -0.028 4.028 13 N -0.339 5.339 14 C 0.314 3.686 15 O -0.439 6.439 16 C -0.173 4.173 17 C 0.003 3.997 18 O -0.304 6.304 19 C -0.007 4.007 20 C 0.019 3.981 21 H 0.096 0.904 22 C -0.187 4.187 23 C -0.193 4.193 24 C -0.036 4.036 25 O -0.280 6.280 26 C 0.001 3.999 27 H 0.079 0.921 28 H 0.238 0.762 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.665 -21.589 10.503 24.018 hybrid contribution 0.321 1.307 0.278 1.374 sum 0.987 -20.282 10.781 22.990 Atomic orbital electron populations 1.69572 1.05968 1.27757 1.50479 1.24994 0.95049 0.99583 0.93460 0.86393 0.79793 0.82297 0.78369 1.20369 1.21028 1.19721 1.21545 0.93738 0.90218 1.51771 0.91690 1.19442 0.86180 0.90763 0.82948 1.86098 1.51313 1.53287 1.49007 1.23359 1.02854 0.90279 1.01086 1.22572 0.85092 0.97691 0.97487 1.48629 1.22472 1.16208 1.46588 1.19915 0.85238 0.81254 0.82179 1.90664 1.22750 1.76145 1.54387 1.21412 1.00763 0.94316 1.00832 1.22130 0.95017 0.88958 0.93560 1.87847 1.48039 1.27415 1.67122 1.22507 0.94200 0.85150 0.98821 1.23010 0.85460 0.93915 0.95723 0.90416 1.22927 0.98711 0.94140 1.02965 1.22942 0.95039 0.98557 1.02751 1.23415 0.96447 0.87099 0.96615 1.89246 1.42311 1.43155 1.53326 1.22093 0.97443 0.87570 0.92841 0.92070 0.76171 0.91389 0.89604 0.91688 0.91945 0.88334 0.88251 0.92392 0.92459 0.92350 0.91817 0.90291 0.90061 0.90533 0.90428 0.89043 0.92210 0.91016 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.90 10.70 55.43 0.59 -22.30 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.90 8.21 -34.44 -0.28 -14.18 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 9 C 0.25 5.95 0.86 -89.94 -0.08 5.87 16 10 O -0.59 -14.82 13.09 -35.23 -0.46 -15.29 16 11 C -0.14 -2.92 5.69 -24.47 -0.14 -3.06 16 12 C 0.09 1.70 6.69 -2.41 -0.02 1.68 16 13 N -0.61 -12.04 3.32 -170.38 -0.57 -12.60 16 14 C 0.53 9.83 7.85 -10.98 -0.09 9.75 16 15 O -0.56 -12.07 16.31 5.55 0.09 -11.98 16 16 C -0.13 -1.92 5.07 -27.88 -0.14 -2.06 16 17 C 0.08 1.10 5.23 37.16 0.19 1.29 16 18 O -0.38 -5.14 10.34 -35.27 -0.36 -5.50 16 19 C 0.07 0.73 5.54 37.16 0.21 0.93 16 20 C 0.08 0.72 3.57 -25.96 -0.09 0.62 16 21 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 22 C -0.15 -0.95 6.63 -25.17 -0.17 -1.12 16 23 C -0.16 -0.89 7.09 -25.17 -0.18 -1.07 16 24 C 0.04 0.31 7.63 37.93 0.29 0.60 16 25 O -0.36 -4.13 11.34 -35.27 -0.40 -4.53 16 26 C 0.12 2.77 6.22 -3.06 -0.02 2.75 16 27 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.39 9.82 6.99 45.56 0.32 10.14 16 29 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 30 H 0.09 1.89 7.77 -51.93 -0.40 1.49 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.94 7.49 -51.93 -0.39 0.55 16 33 H 0.10 1.28 7.86 -51.93 -0.41 0.87 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 45 H 0.07 1.65 7.63 -51.93 -0.40 1.25 16 46 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -29.91 372.71 -8.24 -38.15 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.12 Total: 9.58 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.60 Total: 3.73 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.03 Total: -34.90 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.14 Total: -37.30 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.91 -8.24 -38.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.871 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds