Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48495 * 109.47459 * 269.99862 * 3 2 1 5 5 H 1.48506 * 109.46941 * 30.00379 * 3 2 1 6 6 H 1.48506 * 109.46889 * 149.99894 * 3 2 1 7 7 C 1.37871 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00290 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.77916 * 56.76120 * 9 7 2 11 11 C 1.55156 * 110.71842 * 293.52106 * 9 7 2 12 12 C 1.55123 * 101.48498 * 205.96950 * 11 9 7 13 13 N 1.47423 * 104.72654 * 37.29727 * 12 11 9 14 14 C 1.34777 * 125.65109 * 155.81318 * 13 12 11 15 15 O 1.21283 * 119.99750 * 179.69290 * 14 13 12 16 16 C 1.50702 * 119.99928 * 359.97383 * 14 13 12 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 O 1.42898 * 109.47180 * 179.97438 * 17 16 14 19 19 C 1.42904 * 113.99948 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47095 * 180.02562 * 19 18 17 21 21 H 1.09004 * 110.32956 * 307.24793 * 20 19 18 22 22 C 1.54474 * 110.37191 * 185.00168 * 20 19 18 23 23 C 1.54510 * 104.06005 * 217.18878 * 22 20 19 24 24 C 1.54472 * 104.06265 * 359.97438 * 23 22 20 25 25 O 1.44413 * 104.80716 * 23.97869 * 24 23 22 26 26 C 1.47025 * 108.69835 * 335.55436 * 13 12 11 27 27 H 0.96999 * 119.99977 * 0.02562 * 1 2 3 28 28 H 0.96696 * 113.99872 * 303.23857 * 10 9 7 29 29 H 1.09005 * 111.00556 * 324.21086 * 11 9 7 30 30 H 1.08999 * 111.00040 * 88.02491 * 11 9 7 31 31 H 1.09004 * 110.49673 * 278.45187 * 12 11 9 32 32 H 1.09004 * 110.34018 * 156.06510 * 12 11 9 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 36 36 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 37 37 H 1.09007 * 109.47093 * 300.00015 * 19 18 17 38 38 H 1.08994 * 109.46971 * 59.99650 * 19 18 17 39 39 H 1.09000 * 110.50964 * 335.82878 * 22 20 19 40 40 H 1.09001 * 110.51615 * 98.54463 * 22 20 19 41 41 H 1.09005 * 110.50976 * 118.64423 * 23 22 20 42 42 H 1.09007 * 110.51088 * 241.35214 * 23 22 20 43 43 H 1.09004 * 110.37426 * 142.81361 * 24 23 22 44 44 H 1.09007 * 110.37294 * 265.03631 * 24 23 22 45 45 H 1.09004 * 109.88256 * 120.70346 * 26 13 12 46 46 H 1.08998 * 109.87939 * 241.71109 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 8 0.3637 -2.5713 -1.1196 11 6 0.4744 -2.6858 1.3285 12 6 0.3765 -4.2316 1.4147 13 7 1.6648 -4.7186 0.8890 14 6 2.2300 -5.9086 1.1735 15 8 3.2953 -6.2081 0.6772 16 6 1.5351 -6.8696 2.1035 17 6 2.3791 -8.1372 2.2506 18 8 1.7205 -9.0482 3.1328 19 6 2.4289 -10.2720 3.3394 20 6 1.6354 -11.1657 4.2946 21 1 1.3888 -10.6209 5.2060 22 6 2.4398 -12.4407 4.6313 23 6 1.3687 -13.5520 4.7041 24 6 0.0439 -12.8167 4.4034 25 8 0.4337 -11.6456 3.6536 26 6 2.2280 -3.6937 -0.0021 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2710 -1.8432 -1.1656 29 1 1.0363 -2.2791 2.1694 30 1 -0.5164 -2.2354 1.2690 31 1 -0.4464 -4.5967 0.8001 32 1 0.2461 -4.5458 2.4502 33 1 1.4080 -6.4024 3.0801 34 1 0.5585 -7.1286 1.6948 35 1 2.5062 -8.6044 1.2740 36 1 3.3558 -7.8781 2.6592 37 1 2.5563 -10.7836 2.3853 38 1 3.4069 -10.0574 3.7699 39 1 3.1610 -12.6565 3.8431 40 1 2.9434 -12.3322 5.5919 41 1 1.5606 -14.3172 3.9518 42 1 1.3428 -13.9928 5.7007 43 1 -0.6135 -13.4483 3.8060 44 1 -0.4491 -12.5281 5.3318 45 1 3.2027 -3.3756 0.3682 46 1 2.3275 -4.0939 -1.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592836754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = -204.345410 kcal Electronic energy + Delta-G solvation = -26002.569084 eV Core-core repulsion = 22084.102320 eV Total energy + Delta-G solvation = -3918.466765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15820 -40.46209 -39.20777 -38.46865 -36.13676 -34.15529 -33.39558 -32.96528 -31.60618 -30.89687 -29.96039 -27.26761 -26.25184 -24.72982 -23.53375 -22.91235 -21.92283 -21.48933 -20.16771 -19.22792 -18.49002 -17.76575 -17.42637 -17.17210 -16.94752 -16.74564 -16.62337 -16.39106 -15.97737 -15.87777 -15.14377 -14.96014 -14.69895 -14.58948 -14.24147 -13.83985 -13.62136 -13.35224 -13.25723 -13.14533 -13.08695 -12.68131 -12.66834 -12.52089 -12.41547 -12.27885 -12.20777 -12.18951 -12.08391 -11.99034 -11.48436 -11.30643 -10.99066 -10.73445 -10.66109 -10.63208 -10.14475 -9.66121 -8.26204 -6.40219 1.41456 1.44573 1.53036 1.54764 1.84176 2.38551 2.65806 2.94368 2.99213 3.56428 3.66577 3.80610 3.86646 3.96806 3.99762 4.01951 4.07135 4.17818 4.25855 4.35484 4.38267 4.42307 4.49200 4.51462 4.55402 4.58558 4.67125 4.76693 4.79578 4.83754 4.90746 4.91487 4.96384 5.09731 5.17264 5.17579 5.22912 5.45529 5.52028 5.76069 5.91085 6.04740 6.14096 6.54853 6.64117 7.06221 7.30642 7.44119 8.80281 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.038162 B = 0.002063 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.532757 B =13570.498520 C =13808.453742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.036 3.964 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.053 0.947 9 C 0.233 3.767 10 O -0.595 6.595 11 C -0.129 4.129 12 C 0.103 3.897 13 N -0.611 5.611 14 C 0.524 3.476 15 O -0.593 6.593 16 C -0.122 4.122 17 C 0.086 3.914 18 O -0.397 6.397 19 C 0.062 3.938 20 C 0.072 3.928 21 H 0.077 0.923 22 C -0.145 4.145 23 C -0.151 4.151 24 C 0.032 3.968 25 O -0.398 6.398 26 C 0.128 3.872 27 H 0.273 0.727 28 H 0.383 0.617 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -22.176 12.778 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.165 4.165 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.600 4.600 8 H 0.071 0.929 9 C 0.193 3.807 10 O -0.405 6.405 11 C -0.167 4.167 12 C -0.019 4.019 13 N -0.343 5.343 14 C 0.315 3.685 15 O -0.475 6.475 16 C -0.161 4.161 17 C 0.009 3.991 18 O -0.317 6.317 19 C -0.014 4.014 20 C 0.015 3.985 21 H 0.095 0.905 22 C -0.183 4.183 23 C -0.188 4.188 24 C -0.044 4.044 25 O -0.318 6.318 26 C 0.005 3.995 27 H 0.083 0.917 28 H 0.234 0.766 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.364 -22.698 12.327 25.831 hybrid contribution 0.408 1.611 -0.310 1.690 sum 0.772 -21.087 12.017 24.283 Atomic orbital electron populations 1.69625 1.06569 1.28531 1.49998 1.25604 0.95899 1.02014 0.93016 0.85519 0.78669 0.79037 0.78147 1.20433 1.20139 1.19855 1.21752 0.93489 0.91756 1.53039 0.92886 1.19610 0.86569 0.90597 0.83885 1.86083 1.51404 1.53062 1.49987 1.23149 1.01586 0.92936 0.99060 1.22603 0.84282 0.95012 0.99992 1.48691 1.23070 1.16221 1.46323 1.20692 0.84810 0.81056 0.81989 1.90647 1.24425 1.76691 1.55700 1.21369 1.00698 0.93452 1.00604 1.21987 0.94930 0.88870 0.93329 1.87818 1.48756 1.28304 1.66814 1.22763 0.95212 0.84190 0.99251 1.23132 0.85403 0.94938 0.95067 0.90489 1.22944 0.98629 0.92739 1.03996 1.22949 0.93618 0.98234 1.04013 1.23628 0.97643 0.86396 0.96733 1.89201 1.43291 1.44682 1.54621 1.21809 0.96959 0.88104 0.92600 0.91728 0.76575 0.92020 0.90477 0.90906 0.87838 0.86052 0.86788 0.93409 0.92454 0.92728 0.89886 0.89994 0.88237 0.90114 0.88522 0.88426 0.91519 0.92135 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.09 10.70 21.44 0.23 -45.86 16 2 C 0.04 1.83 5.28 84.65 0.45 2.27 16 3 Si 0.96 41.20 29.54 68.60 2.03 43.22 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -29.70 8.21 25.60 0.21 -29.49 16 8 H 0.05 2.84 7.53 -2.91 -0.02 2.82 16 9 C 0.23 11.38 0.86 -10.35 -0.01 11.37 16 10 O -0.60 -30.50 13.09 -148.98 -1.95 -32.45 16 11 C -0.13 -5.40 5.69 32.06 0.18 -5.22 16 12 C 0.10 3.49 6.69 86.93 0.58 4.07 16 13 N -0.61 -23.71 3.32 -811.34 -2.70 -26.41 16 14 C 0.52 19.04 7.85 87.66 0.69 19.73 16 15 O -0.59 -25.58 16.31 -3.04 -0.05 -25.62 16 16 C -0.12 -3.23 5.07 29.85 0.15 -3.08 16 17 C 0.09 2.24 5.23 71.98 0.38 2.62 16 18 O -0.40 -9.99 10.34 -148.94 -1.54 -11.53 16 19 C 0.06 1.21 5.54 71.98 0.40 1.61 16 20 C 0.07 1.24 3.57 31.09 0.11 1.35 16 21 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 22 C -0.15 -1.53 6.63 31.61 0.21 -1.32 16 23 C -0.15 -1.38 7.09 31.61 0.22 -1.16 16 24 C 0.03 0.44 7.63 72.48 0.55 0.99 16 25 O -0.40 -8.76 11.34 -148.94 -1.69 -10.45 16 26 C 0.13 5.92 6.22 86.73 0.54 6.46 16 27 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 28 H 0.38 19.75 6.99 -74.06 -0.52 19.23 16 29 H 0.06 2.63 8.04 -2.38 -0.02 2.61 16 30 H 0.08 3.36 7.77 -2.39 -0.02 3.34 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.10 2.70 7.49 -2.38 -0.02 2.69 16 33 H 0.12 2.72 7.86 -2.38 -0.02 2.70 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 36 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 0.81 7.87 -2.39 -0.02 0.80 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.06 2.88 7.63 -2.38 -0.02 2.86 16 46 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -64.61 372.71 -0.56 -65.17 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.45 Total: 33.73 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.66 Total: 10.19 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -2.47 Total: -72.27 kcal Atomic # 8 Polarization: -74.83 SS G_CDS: -5.23 Total: -80.06 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -64.61 -0.56 -65.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.175 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds