Wall clock time and date at job start Fri Apr 10 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47138 * 269.99991 * 3 2 1 5 5 H 1.48499 * 109.46677 * 29.99930 * 3 2 1 6 6 H 1.48500 * 109.47169 * 149.99609 * 3 2 1 7 7 C 1.38950 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00263 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99842 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00070 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00279 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00213 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46961 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99770 * 179.97438 * 13 12 10 15 15 H 1.09006 * 110.88328 * 37.42342 * 14 13 12 16 16 C 1.55157 * 111.00365 * 273.54480 * 14 13 12 17 17 C 1.54322 * 102.94411 * 206.42107 * 16 14 13 18 18 N 1.47021 * 107.26600 * 22.19368 * 17 16 14 19 19 C 1.34780 * 125.64749 * 181.01771 * 18 17 16 20 20 O 1.21280 * 120.00423 * 180.02562 * 19 18 17 21 21 C 1.50701 * 119.99795 * 0.03050 * 19 18 17 22 22 N 1.46499 * 109.46992 * 179.97438 * 21 19 18 23 23 C 1.34779 * 119.99872 * 179.97438 * 22 21 19 24 24 N 1.34783 * 119.99768 * 180.02562 * 23 22 21 25 25 O 1.21590 * 120.00297 * 0.02562 * 23 22 21 26 26 C 1.47426 * 108.70691 * 1.28623 * 18 17 16 27 27 H 0.97004 * 120.00356 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00435 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47098 * 59.99436 * 12 10 9 30 30 H 1.09002 * 109.46797 * 299.99311 * 12 10 9 31 31 H 1.00895 * 111.00117 * 56.04301 * 13 12 10 32 32 H 1.09002 * 110.71854 * 88.05754 * 16 14 13 33 33 H 1.09003 * 110.87254 * 324.86296 * 16 14 13 34 34 H 1.08997 * 109.88244 * 262.78321 * 17 16 14 35 35 H 1.08990 * 109.88058 * 141.61040 * 17 16 14 36 36 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 37 37 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 38 38 H 0.97000 * 120.00420 * 0.02562 * 22 21 19 39 39 H 0.96992 * 119.99896 * 0.02562 * 24 23 22 40 40 H 0.97002 * 119.99283 * 179.97438 * 24 23 22 41 41 H 1.08999 * 110.36516 * 94.48618 * 26 18 17 42 42 H 1.08997 * 110.36737 * 216.80150 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3705 0.0000 13 7 6.0503 -3.7555 0.0006 14 6 7.5189 -3.7947 0.0000 15 1 7.9291 -2.9962 0.6183 16 6 8.0766 -3.7209 -1.4460 17 6 9.4394 -4.4353 -1.3277 18 7 9.3763 -5.3019 -0.1418 19 6 10.3766 -6.0806 0.3162 20 8 10.2122 -6.7580 1.3086 21 6 11.6996 -6.1094 -0.4050 22 7 12.6121 -7.0244 0.2851 23 6 13.8614 -7.2116 -0.1846 24 7 14.7008 -8.0538 0.4501 25 8 14.2313 -6.6208 -1.1808 26 6 8.0357 -5.1831 0.4600 27 1 -0.4851 0.8400 -0.0004 28 1 3.8649 -0.3633 -0.0004 29 1 5.9241 -1.8566 0.8899 30 1 5.9240 -1.8568 -0.8901 31 1 5.6748 -4.2722 -0.7804 32 1 8.2101 -2.6843 -1.7553 33 1 7.4236 -4.2483 -2.1414 34 1 10.2344 -3.6995 -1.2073 35 1 9.6205 -5.0376 -2.2178 36 1 11.5478 -6.4508 -1.4290 37 1 12.1294 -5.1078 -0.4159 38 1 12.3169 -7.4961 1.0797 39 1 14.4056 -8.5254 1.2446 40 1 15.5998 -8.1888 0.1118 41 1 7.3831 -5.9746 0.0916 42 1 8.1031 -5.2213 1.5472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180897225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:42 Heat of formation + Delta-G solvation = -85.639746 kcal Electronic energy + Delta-G solvation = -25058.834592 eV Core-core repulsion = 21074.267699 eV Total energy + Delta-G solvation = -3984.566893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78551 -39.91887 -38.69225 -37.90757 -34.97505 -34.79474 -33.97913 -33.88982 -31.72471 -31.01850 -29.53540 -27.90474 -26.08575 -23.86707 -23.38780 -21.60875 -21.12681 -20.01183 -19.44702 -18.88936 -18.44063 -17.84894 -17.06989 -16.90654 -16.23031 -16.04619 -15.49301 -15.38408 -14.99852 -14.85620 -14.83305 -14.16402 -14.09818 -13.81128 -13.51722 -13.32629 -13.01068 -12.95233 -12.82796 -12.58361 -12.19722 -12.17080 -11.73162 -11.52512 -11.20304 -11.10136 -10.80240 -10.63228 -10.36990 -10.16094 -10.01192 -9.61512 -9.56618 -9.06992 -8.66999 -8.28326 -8.21205 -6.34595 -3.86407 2.13108 2.13419 2.75428 2.77068 2.99390 3.03217 3.12370 3.68113 3.84850 3.94843 4.06594 4.07329 4.27426 4.45910 4.61083 4.81881 4.87140 4.89280 4.95773 5.04422 5.17322 5.20430 5.44135 5.51540 5.59402 5.68961 5.70784 5.74650 5.80469 5.87515 5.92172 6.23905 6.46442 6.92207 7.05037 7.40839 7.48551 7.53757 7.64886 8.10339 8.16301 8.55249 8.91019 9.38162 9.77503 10.78391 Molecular weight = 313.16amu Principal moments of inertia in cm(-1) A = 0.042125 B = 0.001920 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.535777 B =14576.627334 C =14905.250270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.448 3.552 11 O -0.564 6.564 12 C 0.049 3.951 13 N -0.656 5.656 14 C 0.078 3.922 15 H 0.096 0.904 16 C -0.168 4.168 17 C 0.099 3.901 18 N -0.614 5.614 19 C 0.525 3.475 20 O -0.538 6.538 21 C 0.124 3.876 22 N -0.735 5.735 23 C 0.709 3.291 24 N -0.865 5.865 25 O -0.597 6.597 26 C 0.116 3.884 27 H 0.274 0.726 28 H 0.370 0.630 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.355 0.645 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.409 0.591 39 H 0.399 0.601 40 H 0.416 0.584 41 H 0.079 0.921 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.720 -8.947 -1.277 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.228 5.228 10 C 0.234 3.766 11 O -0.446 6.446 12 C -0.083 4.083 13 N -0.287 5.287 14 C -0.034 4.034 15 H 0.114 0.886 16 C -0.208 4.208 17 C -0.024 4.024 18 N -0.348 5.348 19 C 0.313 3.687 20 O -0.415 6.415 21 C -0.004 4.004 22 N -0.395 5.395 23 C 0.407 3.593 24 N -0.433 5.433 25 O -0.475 6.475 26 C -0.006 4.006 27 H 0.084 0.916 28 H 0.203 0.797 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.176 0.824 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.246 0.754 39 H 0.227 0.773 40 H 0.248 0.752 41 H 0.097 0.903 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 27.122 -9.435 -0.886 28.730 hybrid contribution 0.816 1.283 -0.375 1.566 sum 27.938 -8.151 -1.262 29.130 Atomic orbital electron populations 1.69619 1.05660 1.27549 1.49139 1.25046 0.95496 0.97998 0.97586 0.86667 0.79806 0.84034 0.78842 1.19652 1.20144 1.19474 1.19433 0.79213 0.96661 1.48205 0.86253 1.42197 1.07556 1.06137 1.66941 1.19669 0.88115 0.84616 0.84238 1.90577 1.69397 1.30904 1.53757 1.21725 0.95190 0.89933 1.01469 1.59914 1.04131 1.13093 1.51605 1.22803 0.88836 0.97147 0.94566 0.88555 1.23480 0.96189 1.01729 0.99424 1.22095 0.98935 0.93457 0.87942 1.48354 1.13525 1.43812 1.29126 1.20096 0.84857 0.79145 0.84640 1.90719 1.82021 1.42539 1.26214 1.20844 0.87117 0.95840 0.96578 1.44721 1.12079 1.49307 1.33353 1.15827 0.80542 0.80128 0.82777 1.42925 1.17370 1.49434 1.33584 1.90986 1.76715 1.52735 1.27053 1.22243 0.81455 0.97290 0.99618 0.91568 0.79680 0.89304 0.93440 0.82361 0.89561 0.89853 0.90742 0.90777 0.88352 0.88352 0.75360 0.77299 0.75151 0.90321 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 18.88 27.74 -169.99 -4.71 14.17 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 7 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 10 C 0.45 9.67 7.82 -10.98 -0.09 9.59 16 11 O -0.56 -14.65 15.78 5.55 0.09 -14.56 16 12 C 0.05 0.73 6.04 -4.97 -0.03 0.70 16 13 N -0.66 -8.89 6.00 -105.59 -0.63 -9.52 16 14 C 0.08 0.76 3.33 -65.45 -0.22 0.54 16 15 H 0.10 0.89 7.92 -51.93 -0.41 0.48 16 16 C -0.17 -1.21 6.53 -24.90 -0.16 -1.38 16 17 C 0.10 0.62 6.49 -3.07 -0.02 0.60 16 18 N -0.61 -5.41 3.32 -170.39 -0.57 -5.98 16 19 C 0.52 5.10 7.92 -10.98 -0.09 5.01 16 20 O -0.54 -6.90 15.92 5.56 0.09 -6.81 16 21 C 0.12 0.97 5.35 -5.19 -0.03 0.94 16 22 N -0.73 -5.78 5.53 -66.41 -0.37 -6.15 16 23 C 0.71 6.30 8.84 -86.91 -0.77 5.53 16 24 N -0.87 -4.04 8.88 27.64 0.25 -3.80 16 25 O -0.60 -7.73 17.18 5.29 0.09 -7.64 16 26 C 0.12 1.20 6.61 -2.41 -0.02 1.19 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.37 7.40 5.76 -40.82 -0.24 7.16 16 29 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.36 4.99 8.01 -39.29 -0.31 4.67 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.63 7.81 -51.93 -0.41 0.22 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.41 2.91 7.45 -40.82 -0.30 2.61 16 39 H 0.40 0.81 8.84 -40.82 -0.36 0.45 16 40 H 0.42 1.48 8.93 -40.82 -0.36 1.12 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -36.97 358.25 -7.06 -44.03 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.75 Total: 13.88 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -1.66 Total: 15.12 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.60 Total: -63.59 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: 0.27 Total: -29.01 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.97 -7.06 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180897225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.605 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds