Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47053 * 270.00456 * 3 2 1 5 5 H 1.48501 * 109.46938 * 30.00408 * 3 2 1 6 6 H 1.48503 * 109.47313 * 150.00324 * 3 2 1 7 7 C 1.38953 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99755 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99756 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99844 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99665 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.46887 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00204 * 179.97438 * 13 12 10 15 15 O 1.21588 * 119.99769 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00537 * 180.02562 * 14 13 12 17 17 C 1.47023 * 125.64409 * 359.97438 * 16 14 13 18 18 C 1.54322 * 107.27149 * 178.95789 * 17 16 14 19 19 C 1.55282 * 103.00430 * 337.88615 * 18 17 16 20 20 H 1.09001 * 110.95548 * 277.33125 * 19 18 17 21 21 C 1.52999 * 111.09626 * 153.45081 * 19 18 17 22 22 O 1.43755 * 109.63071 * 305.25997 * 21 19 18 23 23 C 1.44588 * 104.91946 * 215.71473 * 22 21 19 24 24 C 1.54919 * 101.63594 * 36.26557 * 23 22 21 25 25 O 1.43375 * 109.62937 * 186.04844 * 21 19 18 26 26 C 1.47419 * 125.65006 * 180.02562 * 16 14 13 27 27 H 0.96992 * 120.00146 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99886 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46783 * 60.00656 * 12 10 9 30 30 H 1.08999 * 109.47825 * 300.00002 * 12 10 9 31 31 H 0.96999 * 119.99814 * 0.02562 * 13 12 10 32 32 H 1.09009 * 109.87859 * 298.37607 * 17 16 14 33 33 H 1.09003 * 109.88678 * 59.38281 * 17 16 14 34 34 H 1.09006 * 110.71959 * 96.16400 * 18 17 16 35 35 H 1.08997 * 110.71908 * 219.26179 * 18 17 16 36 36 H 1.08996 * 109.63101 * 65.65754 * 21 19 18 37 37 H 1.09002 * 111.08746 * 278.16431 * 23 22 21 38 38 H 1.08994 * 110.98198 * 154.33447 * 23 22 21 39 39 H 1.08997 * 110.69394 * 205.95989 * 24 23 22 40 40 H 1.09005 * 110.83686 * 82.82990 * 24 23 22 41 41 H 1.09002 * 110.36926 * 322.95057 * 26 16 14 42 42 H 1.08995 * 110.36556 * 85.16341 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0539 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0022 13 7 6.0492 -3.7516 -0.0014 14 6 7.3742 -3.9979 -0.0027 15 8 8.1643 -3.0737 -0.0041 16 7 7.8236 -5.2685 -0.0024 17 6 6.9829 -6.4747 -0.0002 18 6 7.9295 -7.6931 -0.0276 19 6 9.2412 -7.1034 -0.6131 20 1 9.1986 -7.0629 -1.7016 21 6 10.4606 -7.8993 -0.1435 22 8 10.4725 -7.9622 1.2926 23 6 11.8705 -7.9001 1.6564 24 6 12.4272 -6.9220 0.5918 25 8 11.6596 -7.2484 -0.5843 26 6 9.2395 -5.6792 -0.0032 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3632 -0.0014 29 1 5.9247 -1.8562 0.8873 30 1 5.9235 -1.8569 -0.8927 31 1 5.4189 -4.4889 -0.0006 32 1 6.3726 -6.4994 0.9027 33 1 6.3412 -6.4810 -0.8814 34 1 8.0963 -8.0746 0.9798 35 1 7.5322 -8.4757 -0.6739 36 1 10.4196 -8.9082 -0.5540 37 1 12.3418 -8.8792 1.5710 38 1 11.9947 -7.4957 2.6609 39 1 13.4886 -7.1018 0.4212 40 1 12.2560 -5.8873 0.8887 41 1 9.8306 -5.0019 -0.6196 42 1 9.6285 -5.7016 1.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312659472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -139.054796 kcal Electronic energy + Delta-G solvation = -26050.219617 eV Core-core repulsion = 22031.043723 eV Total energy + Delta-G solvation = -4019.175895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08398 -39.98478 -38.52151 -37.35409 -35.44003 -34.48005 -33.72653 -32.54854 -31.77299 -30.17026 -29.09563 -27.71793 -25.32140 -24.13955 -23.66509 -22.87397 -20.72444 -19.84604 -19.62726 -18.81007 -18.00146 -17.52718 -17.17678 -16.87674 -15.91652 -15.80711 -15.39388 -15.13410 -14.97547 -14.78229 -14.24257 -14.13617 -14.01839 -13.66240 -13.38058 -13.13006 -13.11096 -12.92684 -12.74190 -12.46131 -12.17659 -12.10558 -11.94262 -11.83968 -11.31956 -11.21880 -11.01184 -10.67864 -10.62596 -10.11374 -10.04812 -9.98151 -9.68144 -8.95894 -8.74788 -8.45197 -8.28604 -6.39282 -3.91748 2.64102 2.95264 3.01428 3.06129 3.13951 3.33667 3.47973 3.59731 4.01129 4.05376 4.10678 4.24379 4.30914 4.44398 4.51962 4.62253 4.68571 4.91744 4.97972 4.98835 5.12090 5.15861 5.17643 5.31186 5.40878 5.49320 5.59235 5.64989 5.72985 5.77549 5.82778 5.88884 5.94541 6.20746 6.58851 6.68007 7.15865 7.46687 8.01991 8.14523 8.46187 8.75445 8.83318 9.31584 9.65474 10.72916 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.036219 B = 0.002350 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.887176 B =11914.251794 C =12402.853846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.723 5.723 14 C 0.724 3.276 15 O -0.597 6.597 16 N -0.638 5.638 17 C 0.099 3.901 18 C -0.119 4.119 19 C -0.119 4.119 20 H 0.103 0.897 21 C 0.246 3.754 22 O -0.372 6.372 23 C 0.016 3.984 24 C 0.019 3.981 25 O -0.381 6.381 26 C 0.141 3.859 27 H 0.275 0.725 28 H 0.375 0.625 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.249 -15.929 1.319 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.003 4.003 13 N -0.381 5.381 14 C 0.426 3.574 15 O -0.476 6.476 16 N -0.377 5.377 17 C -0.025 4.025 18 C -0.157 4.157 19 C -0.138 4.138 20 H 0.121 0.879 21 C 0.150 3.850 22 O -0.292 6.292 23 C -0.060 4.060 24 C -0.057 4.057 25 O -0.302 6.302 26 C 0.018 3.982 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.985 -15.680 1.247 28.682 hybrid contribution 0.283 1.018 0.093 1.060 sum 24.268 -14.662 1.341 28.385 Atomic orbital electron populations 1.69614 1.05705 1.27794 1.48284 1.25065 0.95539 0.98175 0.97165 0.86668 0.79934 0.83744 0.79144 1.19394 1.20004 1.19186 1.19438 0.78955 0.96784 1.48607 0.86095 1.42116 1.07687 1.06129 1.65526 1.19652 0.88077 0.84862 0.84868 1.90530 1.69263 1.30938 1.55618 1.20814 0.93333 0.82893 1.03255 1.44755 1.05088 1.09287 1.78920 1.15317 0.82582 0.81543 0.78000 1.90898 1.55328 1.42247 1.59078 1.47440 1.07480 1.03765 1.79017 1.22015 0.93969 0.84197 1.02278 1.22602 0.93368 0.96903 1.02780 1.22918 0.93862 0.95481 1.01585 0.87850 1.23902 0.85550 0.95551 0.79994 1.89218 1.24550 1.94801 1.20636 1.24368 0.81350 0.99682 1.00597 1.24241 0.97171 0.99832 0.84490 1.88913 1.32429 1.79142 1.29761 1.21876 0.81847 0.93616 1.00908 0.91406 0.79219 0.89879 0.89852 0.75419 0.91107 0.91185 0.89410 0.89667 0.89114 0.90531 0.87196 0.88156 0.90255 0.90374 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.96 55.50 0.77 -24.36 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.21 27.73 -169.99 -4.71 14.49 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.64 5.09 -10.96 -0.06 -13.69 16 10 C 0.44 9.90 7.85 -10.99 -0.09 9.81 16 11 O -0.58 -14.86 15.24 5.55 0.08 -14.78 16 12 C 0.13 2.30 6.15 -5.19 -0.03 2.27 16 13 N -0.72 -12.61 5.49 -66.41 -0.36 -12.98 16 14 C 0.72 12.57 8.49 -86.92 -0.74 11.83 16 15 O -0.60 -12.12 16.60 5.29 0.09 -12.03 16 16 N -0.64 -8.78 3.33 -176.22 -0.59 -9.37 16 17 C 0.10 1.05 6.15 -3.06 -0.02 1.03 16 18 C -0.12 -0.95 6.37 -24.83 -0.16 -1.11 16 19 C -0.12 -1.04 3.23 -88.39 -0.29 -1.33 16 20 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 21 C 0.25 1.92 3.83 37.16 0.14 2.06 16 22 O -0.37 -3.03 9.46 -59.05 -0.56 -3.59 16 23 C 0.02 0.09 7.95 38.17 0.30 0.39 16 24 C 0.02 0.11 8.07 38.17 0.31 0.42 16 25 O -0.38 -3.30 10.97 -59.05 -0.65 -3.95 16 26 C 0.14 1.66 6.09 -2.52 -0.02 1.65 16 27 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.41 7.01 6.42 -40.82 -0.26 6.74 16 32 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.72 7.23 -51.93 -0.38 0.34 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.07 0.82 7.31 -51.93 -0.38 0.44 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -34.78 348.47 -7.43 -42.21 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.88 Total: 13.41 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: -0.83 Total: 19.38 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.23 Total: -60.40 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.03 Total: -34.35 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.78 -7.43 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312659472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.847 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds